G112580


Basic Information

Item Value
gene id G112580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 20819439 ~ 20821014 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU152192
GGAGAGCCGTTTCTGTACTATGATGGGGACGGAAACCAGATTGAAACTGCTCATAGAGGTAGTTATTTGAGAGGTGGGAGTGAACCTGGGTAGCAACTGTCTTCTCTAGGATTTTGGAAAGAAAAGGCAGATTAGAGATGGGACGAAGGTTGTTAAAATTGTTAGGATCAAGACCAGGTTTCTTTAAGATAGGGGTTACTGCAGCAGACTTTAATGACAAAGGGACAGATCCAGAGGTGAGGGAAGAGTGAATAATGGCAGTTATCATAGGCAAAATAGAAGAAAGACAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152192 True 292 lncRNA 0.43 2 20819439 20821014

Neighbor

gene id symbol gene type direction distance location
LOC103042187 si:zfos-169g10.2,sstr3,LOC108424687,LOC107705906,LOC107666722,LOC107737981,LOC107555103 coding downstream 69038 20717646 ~ 20750401 (-)
eif3d eif3d coding downstream 128120 20680662 ~ 20691319 (-)
LOC103039925 cacng2,cacng2a,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643 coding downstream 177106 20562199 ~ 20642333 (-)
tab1 tab1 coding downstream 326096 20471276 ~ 20493343 (-)
mgat3 mgat3,LOC103038268,LOC107705910 coding downstream 355844 20384487 ~ 20463595 (-)
fam83f NA coding upstream 26126 20847140 ~ 20868990 (-)
LOC103042502 NA coding upstream 50641 20871655 ~ 20891346 (-)
LOC103031880 LOC103031880,LOC108430001,LOC108272922 coding upstream 657088 21478102 ~ 21486266 (-)
LOC111193678 NA coding upstream 681992 21503006 ~ 21507152 (-)
LOC103040199 mob4,LOC103040199,LOC106586370,LOC105016277,LOC107389570,LOC106582314,LOC105899369 coding upstream 701595 21522609 ~ 21533074 (-)
LOC111193676 NA non-coding downstream 107451 20710909 ~ 20711988 (-)
G112547 LOC103040247,LOC108424720,LOC107737982,LOC107666673 non-coding downstream 119316 20697184 ~ 20700123 (-)
G112538 NA non-coding downstream 261100 20557556 ~ 20558339 (-)
G112525 NA non-coding downstream 282647 20494049 ~ 20536792 (-)
LOC111193746 NA non-coding downstream 442843 20373157 ~ 20376596 (-)
G112587 NA non-coding upstream 13815 20834829 ~ 20835737 (-)
G112592 NA non-coding upstream 23789 20844803 ~ 20845983 (-)
G112607 NA non-coding upstream 65339 20886353 ~ 20886810 (-)
G112698 LOC103031562,LOC108430012,LOC103371798,LOC108272920 non-coding upstream 609968 21430982 ~ 21454916 (-)
G112725 NA non-coding upstream 670484 21491498 ~ 21493415 (-)
syngr1 syngr1 other downstream 264012 20458758 ~ 20555427 (-)
G112507 NA other downstream 502102 20272000 ~ 20317337 (-)
trnae-uuc_17 NA other downstream 723428 20095940 ~ 20096011 (-)
LOC103032158 LOC108424749,LOC108273301 other downstream 725113 20056171 ~ 20094326 (-)
zglp1 NA other downstream 977147 19834408 ~ 19842292 (-)
LOC103040822 LOC108429994 other upstream 760731 21581745 ~ 21585479 (-)
G112778 LOC103032844,LOC108430042,LOC108246801,LOC105893128 other upstream 780230 21601244 ~ 21652734 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other upstream 1555298 22376312 ~ 22430384 (-)
LOC111193749 NA other upstream 1652688 22473702 ~ 22477328 (-)
LOC111193684 NA other upstream 1773398 22594412 ~ 22605138 (-)

Expression


Co-expression Network