G112592


Basic Information

Item Value
gene id G112592
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 20844803 ~ 20845983 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU152206
TTGTTTAAACAAAGAGTAAACAATTCATTGGTTTacagcttacagctggtaattaccaactgaaataaactgagttttggaaatggatttttaaaaatcttaatttacaaagcctttgtctgtagtaaagcagtattggaacagattgtgttattgcactctctactgcagcatttacacacttgcACACAGTACATTCTACAGATCTACAGTGTTTTATGGCTCTTGTAGATGCTTTATAAGAATATTTCTACATAGCACTAAAAGGTGTTTACAATTGCAATTGGCCAAAGAACCCattttcagtgctatacagaacCATAGAGTGTACCTTTCTGtactgtaagcccagataagttgaatttacttaaaacatttgaggaaacaggttgccttaaaaaagttaagtaatgggtaatgacaACTTAAGTTAgtataacttagaacatcaagttattacaactaaaggagaacttgatttatttctaaggtagcccagggggaatctctacacactgatggtgagtgtctgtcagaaactgttggacacccagtatgcaaatagattgtaacagaagccaatggaaaagaagctgttaatgactaGACTAAagtcagttattataagttttatcaactcaaagatctcagcttgaatgtatttgtgcccacaaatgtttaactaactcaaaatagttgagtatgtaaaacagacttaaatcatttgagttcaaacaacgtatgggtttacagttcATCTCGTTACTGCATTCAATAGTTCTTAATTATCTGAAAGGGGTGTTAGATTTTGGAGGGTTGAAGATTAATCCTTTTAGGACTTTTAGTTCTCCACAAAGCTGCGGTTGAGAAACactaatttagagcattcatgatccagtctgatcttttttttatgtttgtatataattttttttgaggagaaaaaaggaaacacattgaaaatgaaatgaaatttcAGGTTCAGTGAAAGGATTTAGTGCAATATTGAATGCAACAGAGAATAACTGTGAGAGATgagaaaatgttatttaatacaGCCTGTGTTATATATAGCATGTGTGCCCTCTAGTGGTCCAGGTTGTGTaagtgcatgtatgtatgtatttgaaCTAGCAATAAAAGTGTATGTATGGGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152206 True 1158 lncRNA 0.34 2 20844803 20845983

Neighbor

gene id symbol gene type direction distance location
LOC103042187 si:zfos-169g10.2,sstr3,LOC108424687,LOC107705906,LOC107666722,LOC107737981,LOC107555103 coding downstream 94402 20717646 ~ 20750401 (-)
eif3d eif3d coding downstream 153484 20680662 ~ 20691319 (-)
LOC103039925 cacng2,cacng2a,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643 coding downstream 202470 20562199 ~ 20642333 (-)
tab1 tab1 coding downstream 351460 20471276 ~ 20493343 (-)
mgat3 mgat3,LOC103038268,LOC107705910 coding downstream 381208 20384487 ~ 20463595 (-)
fam83f NA coding upstream 1157 20847140 ~ 20868990 (-)
LOC103042502 NA coding upstream 25672 20871655 ~ 20891346 (-)
LOC103031880 LOC103031880,LOC108430001,LOC108272922 coding upstream 632119 21478102 ~ 21486266 (-)
LOC111193678 NA coding upstream 657023 21503006 ~ 21507152 (-)
LOC103040199 mob4,LOC103040199,LOC106586370,LOC105016277,LOC107389570,LOC106582314,LOC105899369 coding upstream 676626 21522609 ~ 21533074 (-)
G112587 NA non-coding downstream 9066 20834829 ~ 20835737 (-)
G112580 NA non-coding downstream 23789 20819439 ~ 20821014 (-)
LOC111193676 NA non-coding downstream 132815 20710909 ~ 20711988 (-)
G112547 LOC103040247,LOC108424720,LOC107737982,LOC107666673 non-coding downstream 144680 20697184 ~ 20700123 (-)
G112538 NA non-coding downstream 286464 20557556 ~ 20558339 (-)
G112607 NA non-coding upstream 40370 20886353 ~ 20886810 (-)
G112698 LOC103031562,LOC108430012,LOC103371798,LOC108272920 non-coding upstream 584999 21430982 ~ 21454916 (-)
G112725 NA non-coding upstream 645515 21491498 ~ 21493415 (-)
LOC111193677 NA non-coding upstream 649326 21495309 ~ 21502890 (-)
LOC111193680 NA non-coding upstream 697503 21543486 ~ 21550102 (-)
syngr1 syngr1 other downstream 289376 20458758 ~ 20555427 (-)
G112507 NA other downstream 527466 20272000 ~ 20317337 (-)
trnae-uuc_17 NA other downstream 748792 20095940 ~ 20096011 (-)
LOC103032158 LOC108424749,LOC108273301 other downstream 750477 20056171 ~ 20094326 (-)
zglp1 NA other downstream 1002511 19834408 ~ 19842292 (-)
LOC103040822 LOC108429994 other upstream 735762 21581745 ~ 21585479 (-)
G112778 LOC103032844,LOC108430042,LOC108246801,LOC105893128 other upstream 755261 21601244 ~ 21652734 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other upstream 1530329 22376312 ~ 22430384 (-)
LOC111193749 NA other upstream 1627719 22473702 ~ 22477328 (-)
LOC111193684 NA other upstream 1748429 22594412 ~ 22605138 (-)

Expression


Co-expression Network