LOC103042502


Basic Information

Item Value
gene id LOC103042502
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 20871655 ~ 20891346 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675531.1
CTTCCCTTTTTTGACTGCACAGAGCCAGACCACGAAGCAACAACACGAACGCGGGTGAGCCGCCGCTGGTGTCCCTGCATTACTCTGCAGCCGGTATGAATTCAATGTTTCATCACACTGACGACGCCATACCGTAGACCATTTCCTCTGGGGGAGAATTCTTCAATCTGCACGGTTGACTGGTGAAGGagtccATTAGCCAGTCTCTCAGTGATGGAGGCAATTGGCAAGTTTGACTTCACGGCCACGGCCCATGACGAGCTGAGCTTCAAGAAAGGAGAAACCATTAAGATTTTAGGAACTCAGGAGGATTGGTATAAAGCGGAGAAATGCGGCATGACTGGGTTTGTACCGAAGAATTACATCACACTCAACATCCCCAGGTGGTATCAAGACGACATCAGTCGACAAGAGGCTGAGAGCATGCTCAAGTCCCAGCCAATAGGAGCCTTCATCATCCGTGACAGCCAGAGCTCCCCAGGAGACTTATCCATCTCAGTCAGGCACGAGTCAGATGTGCAGCACTTCAAAGTCCTGCAGGATAAGAAAGGACAGTATTTCCTATGGGACATGAAATTCACCTCTCTGAATAAATTAGTGGACTATTACACCCACAATTCCATCTCCAAGCAGAGCTGCGTCCGCCTCTTCACTGAACAGCCGagACCATTTGATGTTCCACAAGAAGCCAGGCCATCTGCTCTGcCTCGATTAGATATGCCTGGTAGAGGCTCTCCTGACCCCAGACCATTTCCTCAGgagagaggagagagaatgaGGAGTCAGAATATACCTGCAGGCCCACGGGGCCCCCCTCCTCCCCGTGCAGAGACCCTCCCACCTCCACAGACGTCCCTGACGCAGGTGAGAGCCCTGTTCGACTTCAGAGCCGAGGAGAAGGATGAGCTGGACTTTAACGCTGGGGACATTATCGAAGTGGTGGACCGAGTGGACTCCTACTGGTGGATGGGTCAACTACGGGGCAGGAGAGGACTCTTCCCTGCCAACTATACAAATCCTTTATAAACATGCAGCACAACCAGACACACTGTGTTACACTGCACTGTGAAAGCTGAAACAAATTATGTTACACTGGTATTTTAACTAAACTATTTGTAGATATACTAACTAACTTTATtcatcatataaaaaaataaatgttgtttaaaaaataaatgatgattCATCTGAATCATCTGGATTGTTCTGGATTGTTTGAATTCACTGAACTTCAAAAGGCTGAAATTGAAGAGACAGACCATCCTGGTCTACCAGTATCTCCATCTTAACCAAATTATTAAACAAGCTTAAGCAACCTATTGCTCCAGTATGAGCAGCTACATCTaacaaactcaaaaaaaaaaaaaaaaacgaaatt

Function

GO:

id name namespace
GO:0002573 myeloid leukocyte differentiation biological_process
GO:0048884 neuromast development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675531.1 True 1378 mRNA 0.47 9 20871655 20891346

Neighbor

gene id symbol gene type direction distance location
fam83f NA coding downstream 2665 20847140 ~ 20868990 (-)
LOC103042187 si:zfos-169g10.2,sstr3,LOC108424687,LOC107705906,LOC107666722,LOC107737981,LOC107555103 coding downstream 121254 20717646 ~ 20750401 (-)
eif3d eif3d coding downstream 180336 20680662 ~ 20691319 (-)
LOC103039925 cacng2,cacng2a,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643 coding downstream 229322 20562199 ~ 20642333 (-)
tab1 tab1 coding downstream 378312 20471276 ~ 20493343 (-)
LOC103031880 LOC103031880,LOC108430001,LOC108272922 coding upstream 586756 21478102 ~ 21486266 (-)
LOC111193678 NA coding upstream 611660 21503006 ~ 21507152 (-)
LOC103040199 mob4,LOC103040199,LOC106586370,LOC105016277,LOC107389570,LOC106582314,LOC105899369 coding upstream 631263 21522609 ~ 21533074 (-)
LOC103041116 LOC108429995,LOC101466508,LOC102201470,LOC105357607 coding upstream 677180 21568526 ~ 21570309 (-)
LOC103025049 LOC108415076,LOC108271512,LOC107723929,LOC107708110,LOC107587643,LOC107595459,LOC107666006 coding upstream 1325969 22217315 ~ 22227655 (-)
G112592 NA non-coding downstream 25672 20844803 ~ 20845983 (-)
G112587 NA non-coding downstream 35918 20834829 ~ 20835737 (-)
G112580 NA non-coding downstream 50641 20819439 ~ 20821014 (-)
LOC111193676 NA non-coding downstream 159667 20710909 ~ 20711988 (-)
G112547 LOC103040247,LOC108424720,LOC107737982,LOC107666673 non-coding downstream 171532 20697184 ~ 20700123 (-)
G112698 LOC103031562,LOC108430012,LOC103371798,LOC108272920 non-coding upstream 539636 21430982 ~ 21454916 (-)
G112725 NA non-coding upstream 600152 21491498 ~ 21493415 (-)
LOC111193677 NA non-coding upstream 603963 21495309 ~ 21502890 (-)
LOC111193680 NA non-coding upstream 652140 21543486 ~ 21550102 (-)
LOC111193681 NA non-coding upstream 670931 21562277 ~ 21562715 (-)
syngr1 syngr1 other downstream 316228 20458758 ~ 20555427 (-)
G112507 NA other downstream 554318 20272000 ~ 20317337 (-)
trnae-uuc_17 NA other downstream 775644 20095940 ~ 20096011 (-)
LOC103032158 LOC108424749,LOC108273301 other downstream 777329 20056171 ~ 20094326 (-)
zglp1 NA other downstream 1029363 19834408 ~ 19842292 (-)
LOC103040822 LOC108429994 other upstream 690399 21581745 ~ 21585479 (-)
G112778 LOC103032844,LOC108430042,LOC108246801,LOC105893128 other upstream 709898 21601244 ~ 21652734 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other upstream 1484966 22376312 ~ 22430384 (-)
LOC111193749 NA other upstream 1582356 22473702 ~ 22477328 (-)
LOC111193684 NA other upstream 1703066 22594412 ~ 22605138 (-)

Expression


Co-expression Network