G112725


Basic Information

Item Value
gene id G112725
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 21491498 ~ 21493415 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU152357
tattttaccaccGCAtgacttaagccctatccggacgggattctTTCTCAAGGGATCTTTGGATAATTTTCGGGAGTcctctttgattttattcaCGTCCAGAAcgaacatatactgtatgtgtcttctgagaaaattacaggctaaattacttactgtttttagctgaattctgtggtcctccagtaattttagttccTTTTAGACAAACATCTcttgagtttcgtcacctcacgcttaataaaatagctatttttccactgccacacactgtaATTTGTgtaaacacaacagcgagtggaaatggaggagctactgaacacgatgttacttgaccgagaaagccaaaaaaattcACTGGTCCTCCCGTTTTTTCAATTGGAGTCCGGATGcatgagttttatcactgagtagaagtgtgaaatatgagAAAGTAATcgcgtccagatagggctttaagGAAGGGCTATTTTAAGGCATCCACACAACACCTATGGGCCGCAgcaaaaaaaactcacacagGCATACTGTGCAAAACttaacacttttattattaaaatcactCCTCTCTCGTCTGCATTCAGCCAGGGTGCGGCTACAAACCaaaccatataaaactcagttgagttaaataaacttaagttGAGTAAGGGAAAAGTTAATCAAATAGCATCAAATATAAAAGATAGGTTAAGGTTTTGGTGTGTTGTTTCCATGATCAGTGAACAGCTGGTGTGCATGGAtcctgctgaacatgttccagtctggttatacaCCACTATTAGCAACTAGTGTGAGTAAATTCACACAGTATTTAGATTGAAGATGTTCCCATTAAAGGAAACATAGAATTAAACCTAGAACTAGGTTTAATCCTTGTCCGGGAAACTGGCCCTTAAATGCTTAAGATTCTTCCCTTAAAATAAAgatgtgtgtctttggtatcgcgAGGGctcaaaaaatacgccttgcatggctcaaaactaatttgtttttttaattaatcatggctgtCTTTTAGGCattatgtgaaataaaccataaATCAGTGAGCCAGTCGTcctttcctttaagagccagcagtgctctgactttggcacgttcgtatcttaacagcatggCGCTTTGTGTCTCagtagaggatactgacctaCATGTTCACAATTTAAATggacgccagcagctcatttaagggaccagcaatgttattttattctttattctgtttattgttgagtaaaATGTCAGGTCAAGTCGGGTTGAGTTTTTACTCTTTTCAAGTAATTTTAGTGTAGGTAGTTTTAGAAAGCCCATAATCCACTGTACTTAAATTAACATAGCTACTGCCAAACAGAATTACTGTTTGGAAACTTGCTGAATTTGCTGCACATTGCAATTATGTTCTATAATTTATTACCCACATTAGACTTGTAACTCAGGGACTCAATCAAACGAagcaaacactgtgtttaaattcATGACCCTGTAAGACAGATTAATGATCATTTCTGAGATCAGAGATACACCCTTTACtgttacacacatttacaatagTAAAACACCTCTCTCATAGTCTGAGAGTACAGACATTTTCAGATACTTCCGCTTGCTTAAGTCTCATAAATCAAACAACTTTGTTTGTGATCTGTGTCAAAACTTGATTCATGTATACCTTTCTGCAAAATGAGCTGCAGTCAATCAACCATACATTGACAGAAAGTTCTGGTGAGATGTCATTAAGGAAGTTTATCTCTACTGTAGATTGTTGACCATATTGGGTGTTTCTATGTGCCCACGTCTGTTGCCTGGATTAGCTGAGCCTATCTGTTTCAACCTTTGTCCTTGTCTGACTACACAAGCGCATTTTGCATAATTTTTATGACTATGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152357 True 1888 lncRNA 0.38 2 21491498 21493415

Neighbor

gene id symbol gene type direction distance location
LOC103031880 LOC103031880,LOC108430001,LOC108272922 coding downstream 5232 21478102 ~ 21486266 (-)
LOC103042502 NA coding downstream 600152 20871655 ~ 20891346 (-)
fam83f NA coding downstream 622508 20847140 ~ 20868990 (-)
LOC103042187 si:zfos-169g10.2,sstr3,LOC108424687,LOC107705906,LOC107666722,LOC107737981,LOC107555103 coding downstream 741097 20717646 ~ 20750401 (-)
eif3d eif3d coding downstream 800179 20680662 ~ 20691319 (-)
LOC111193678 NA coding upstream 9591 21503006 ~ 21507152 (-)
LOC103040199 mob4,LOC103040199,LOC106586370,LOC105016277,LOC107389570,LOC106582314,LOC105899369 coding upstream 29194 21522609 ~ 21533074 (-)
LOC103041116 LOC108429995,LOC101466508,LOC102201470,LOC105357607 coding upstream 75111 21568526 ~ 21570309 (-)
LOC103025049 LOC108415076,LOC108271512,LOC107723929,LOC107708110,LOC107587643,LOC107595459,LOC107666006 coding upstream 723900 22217315 ~ 22227655 (-)
LOC111193748 LOC108271854,LOC106566064,LOC107587570,LOC107723915,LOC107696468 coding upstream 749115 22242530 ~ 22366698 (-)
G112698 LOC103031562,LOC108430012,LOC103371798,LOC108272920 non-coding downstream 36582 21430982 ~ 21454916 (-)
G112607 NA non-coding downstream 604688 20886353 ~ 20886810 (-)
G112592 NA non-coding downstream 645515 20844803 ~ 20845983 (-)
G112587 NA non-coding downstream 655761 20834829 ~ 20835737 (-)
G112580 NA non-coding downstream 670484 20819439 ~ 20821014 (-)
LOC111193677 NA non-coding upstream 1894 21495309 ~ 21502890 (-)
LOC111193680 NA non-coding upstream 50071 21543486 ~ 21550102 (-)
LOC111193681 NA non-coding upstream 68862 21562277 ~ 21562715 (-)
LOC111193682 NA non-coding upstream 69323 21562738 ~ 21564555 (-)
LOC111193683 NA non-coding upstream 71685 21565100 ~ 21565651 (-)
syngr1 syngr1 other downstream 936071 20458758 ~ 20555427 (-)
G112507 NA other downstream 1174161 20272000 ~ 20317337 (-)
trnae-uuc_17 NA other downstream 1395487 20095940 ~ 20096011 (-)
LOC103032158 LOC108424749,LOC108273301 other downstream 1397172 20056171 ~ 20094326 (-)
zglp1 NA other downstream 1649206 19834408 ~ 19842292 (-)
LOC103040822 LOC108429994 other upstream 88330 21581745 ~ 21585479 (-)
G112778 LOC103032844,LOC108430042,LOC108246801,LOC105893128 other upstream 107829 21601244 ~ 21652734 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other upstream 882897 22376312 ~ 22430384 (-)
LOC111193749 NA other upstream 980287 22473702 ~ 22477328 (-)
LOC111193684 NA other upstream 1100997 22594412 ~ 22605138 (-)

Expression


Co-expression Network