LOC111193748 (LOC108271854,LOC106566064,LOC107587570,LOC107723915,LOC107696468)


Basic Information

Item Value
gene id LOC111193748
gene name LOC108271854,LOC106566064,LOC107587570,LOC107723915,LOC107696468
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 22242530 ~ 22366698 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675538.1
CGCGCTCTGTTTTTATTCCGCAGAAGTTGCGAGGCGCTGCGGGCGTGGCAGTGCGTGGCAGTGCGGGGCTCGGAGGGCTGTTGGCTGATCGCTGGGGCACGAGGTTTGGATTACGATGCCGTGCGCGTAGCGTGTTCTCCGCTCTCCGGTCGCAGCTGTCCGTTCTCCGTCGCTGTGCGTAATTGCGCGCGTCCGTATACTACCCGAGACCGTTTGTGCGTGTATATTAATTTacacatatacctatatatgtatatatgagtgattgagtgtgtgtgtatataggttGTATATGCGTATgtgatatatacacacacacatatacaaacacacgcgcgcgcacacacaaacacacacgcgctCCAACAACTGGATGTGTCTGTCGGTGGATTGGGACTGGAGCGCGCGGGGCTGCTGATAGAGGCGATTATTGATCCGGGTGATCAATCGCCTCGCGGCAACGTTGaggccactctctctctctctctctctctctctctctctctcacactaacacacacacactcacacacacactgagtgaTTGATGATCGATTGATGATCGATTAATGTAGCACCCCGCGCGAGCTCACGTGTGAAACTTGTTTGATCGGCTACGCGCGTGCGTGCGTGCATTTCgccgcttttattatatatttttattaatttttatcatattttttgcgcCAAATCCGCGCGGATCGGTAAAGAATGGGCTGCACGGTGAGCGCCGAGGACAAGGCGGCGGCGGAGAGATCCAAAATGATCGATAAGAACCTCCGCGAGGATGGAGAGAAGGCTGCGCGAGAGGTGAAGCTGCTCCTGCTGGGTGCTGGTGAATCTGGGAAAAGCACCATTGTAAAGCAGATGAAGATCATCCACGAGGACGGATACTCAGAAGACGAGTGTAAGCAGTACAGAGCTGTGGTCTACAGCAACACCATCCAGTCCATCATGGCCATCATCAAAGCCATGGGAAACCTCAAGATCGAGTACAGTGACGCATCGAGAGCGgatgaTGCACGGCAGCTCTTTGCACTgtctgcagcagcagaagagcAGGGAATCCTCCCAGACGATTTATCCAACGTCATCCGCAGACTGTGGGCCGACAGCGGGGTGCAGGGCTGCTTCGGCCGCTCCCGAGAGTACCAGCTCAATGACTCTGCAGCTtattATCTGAATGATCTTGAGAGGATAGCACGAGCAGACTACATTCCCACCCAGCAGGACGTGCTGAGGACCAGAGTCAAAACCACCGGCATCGTCGAGACGCACTTCACTTTTAAGGACCTGCACTTCAAGATGTTTGATGTtggaggtcagaggtcagagagGAAGAAGTGGATCCACTGTTTTGAGGGAGTGACCGCCATCATCTTCTGCGTGGCCCTCAGCGCATATGACCTGGTGCTGGCTGAGGATGAGGAGATGAACCGAATGCACGAGAGTATGAAGCTCTTCGACTCCATCTGCAACAACAAGTGGTTCACAGAGACCTCCATCATCCTCTTCCTGAATAAGAAGGACCTGTTTGAGGAGAAGATCACGAGCAGTCCTCTCAACATCTGCTTCCCCGAGTACTCAGGAGCTAATAAATACGATGAGGCAGCGAGCTACATCCAGACTAAATTCGAGGATCTGAACaagaaaaaagacacaaaagaGATTTACACTCACTTCACCTGCGCCACCGACACCAAGAACGTGCAGTTCGTCTTCGACGCCGTCACCGACGTCATCATCAAAAACAACCTGAAGGACTGCGGCCTTTTCTAAAGACCTGGCCAGGAGAGAGACGCCCAGgtaaatcCTGACTGGGTGGTGCTTCTGCAGCACAACGCCAGACTGCCTACAAAccctgaatttttattttatacccggaggagaaaaaagacagagaaacgcaACAAACtagaagaaaaggaaaataatgcaaaatcaCCATCACTGAATTCCAAAACACACCTTCTCTCCTGCacctaatttttattattattgttattattattattattattatttttgtaaatattttattttaaggagtttttttttttctttcgatTGAAAAAAAGCAGCAGTGATTTCTGATATGTTTCTCTTACCCTTTGAccttttttgcttttgattgaCAGGGCAAAAGAAGAGGGCGGGGATAAAAAAAATGCGTTTGATATATAAAACCTGTTTCCTTTTCTTAAACAGATGTGCAGAATTTTATTGAATTAACTGCCTGAAGCTTCTTTTTGTAAAAGCTCTGAGAGCACAGACcgatttttgcttttttactcACCTGATGATTCCACGCTCCCGGCTCGACTGTACAGAGAACTGCATGACTgaccataaaaataaaaacagataaaaataaaaacagctcgCTCCGG

Function

NR:

description
PREDICTED: guanine nucleotide-binding protein G(i) subunit alpha-2

GO: NA

KEGG:

id description
K04630 GNAI; guanine nucleotide-binding protein G(i) subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675538.1 True 2390 mRNA 0.48 9 22242530 22366698

Neighbor

gene id symbol gene type direction distance location
LOC103025049 LOC108415076,LOC108271512,LOC107723929,LOC107708110,LOC107587643,LOC107595459,LOC107666006 coding downstream 14875 22217315 ~ 22227655 (-)
LOC103041116 LOC108429995,LOC101466508,LOC102201470,LOC105357607 coding downstream 672221 21568526 ~ 21570309 (-)
LOC103040199 mob4,LOC103040199,LOC106586370,LOC105016277,LOC107389570,LOC106582314,LOC105899369 coding downstream 709456 21522609 ~ 21533074 (-)
LOC111193678 NA coding downstream 735378 21503006 ~ 21507152 (-)
LOC103031880 LOC103031880,LOC108430001,LOC108272922 coding downstream 756264 21478102 ~ 21486266 (-)
LOC111193663 LOC108433669 coding upstream 79191 22445889 ~ 22450399 (-)
LOC103023872 rbm5,LOC108433690,LOC108271979,LOC107696464 coding upstream 88324 22455022 ~ 22471592 (-)
LOC103023031 gnb1,gnb1b,LOC105895937,LOC108272010,LOC107666091,LOC107595416,LOC103044197 coding upstream 149458 22516156 ~ 22560289 (-)
mst1 mst1,LOC107707265,LOC107666157,LOC107595414 coding upstream 244808 22611506 ~ 22645591 (-)
LOC103024805 cacna2d2,LOC108433686,LOC108271986 coding upstream 303458 22670156 ~ 23092965 (-)
G112979 NA non-coding downstream 36150 22205511 ~ 22206380 (-)
G112980 LOC108415075 non-coding downstream 37286 22197799 ~ 22205244 (-)
G112971 NA non-coding downstream 107973 22116985 ~ 22134557 (-)
G112969 uba7,LOC108272095,LOC108411908,LOC107723899,LOC107666069,LOC107595442 non-coding downstream 140353 22100118 ~ 22102177 (-)
G112829 NA non-coding downstream 357797 21884470 ~ 21884733 (-)
G112994 NA non-coding upstream 23505 22390203 ~ 22451112 (-)
G113008 NA non-coding upstream 212775 22579473 ~ 22584023 (-)
G113022 NA non-coding upstream 295883 22662581 ~ 22666345 (-)
G113030 NA non-coding upstream 337701 22704399 ~ 22705663 (-)
G113036 NA non-coding upstream 393999 22760697 ~ 22762206 (-)
G112778 LOC103032844,LOC108430042,LOC108246801,LOC105893128 other downstream 589796 21601244 ~ 21652734 (-)
LOC103040822 LOC108429994 other downstream 657051 21581745 ~ 21585479 (-)
syngr1 syngr1 other downstream 1687103 20458758 ~ 20555427 (-)
G112507 NA other downstream 1925193 20272000 ~ 20317337 (-)
trnae-uuc_17 NA other downstream 2146519 20095940 ~ 20096011 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other upstream 9614 22376312 ~ 22430384 (-)
LOC111193749 NA other upstream 107004 22473702 ~ 22477328 (-)
LOC111193684 NA other upstream 227714 22594412 ~ 22605138 (-)
LOC103039435 tusc2,LOC108433681,LOC103039435,LOC107696420,LOC107595412,LOC107724521 other upstream 932530 23299228 ~ 23312013 (-)
G113190 NA other upstream 1185651 23552349 ~ 23553064 (-)

Expression


Co-expression Network