LOC103023031 (gnb1,gnb1b,LOC105895937,LOC108272010,LOC107666091,LOC107595416,LOC103044197)


Basic Information

Item Value
gene id LOC103023031
gene name gnb1,gnb1b,LOC105895937,LOC108272010,LOC107666091,LOC107595416,LOC103044197
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 22516156 ~ 22560289 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675546.1
CCATCTCGTTGTCTGATGGCCGGATGAGAAGCGGAGCGAGCGGAGGAGAGCGGCTCCTTCAAGGAAGGCAACGGGGAAGCGGAGTCAGACAGCCGGATTTACACCGCCCGAATCCCGCCTTACGGACCTCAGCGACCGGCGCTTTGTGTTGCGGCTGAACGGTGTGCTCCAGAGCTTCCAGAAGCGGGCTGTGTTCTGGTTCTGGAGCGTTTTATTTCTGAGATCTGGACTGGTTTGTGAGGACCGAGCCTAGTtgggtttagtttagcttagcgaGCTAGCTCGTCTTGTTGCTCGTCGTTGATGCGTGGATTTGACAGCTGCACAGTCGGGTTTATTCGGTCAATGCCATATAACGTTAAAACAAGGCCAGCTCCCACTGAGTACAGATCAAAGTGTGTCCCGACAGCAGGAGAGAGGAAGAGCtttagaagaagaaaatgagtGAACTGGACCAGTTACGCCAGGAGGCTGAGCAGCTCAAAAACCAGatcagagATGCGAGGAAAGCCTGTGCAGATGCCACACTATCACAGATCACAGCCAACATCGACCCTGTTGGCCGAATCCAGATGCGCACAAGGCGAACGCTGAGAGGACATTTGGCTAAAATCTATGCCATGCACTGGGGCTCTGACTCCAGGCTGCTGGTTAGTGCATCCCAGGATGGTAAACTCATTATTTGGGACAGCTATACCACAAATAAGGTCCATGCCATTCCTCTGCGCTCATCCTGGGTGATGACCTGTGCCTACGCTCCCTCAGGGAACTACGTGGCCTGTGGAGGCCTGGACAACATCTGTTCCATCTACAGTCTGAAGACTCGCGAGGGTAATGTGCGCGTCAGCCGTGAACTGGCTGGACACACAGGTTACCTGTCATGCTGTCGCTTCGTTGATGACAACCAGATCGTCACGAGTTCTGGCGACACCACCTGtgctcTCTGGGATATAGAGACCGGTCAGCAGACGACCACTTTTGCCGGCCACACCGGAGACGTGATGAGCCTGTCCCTGGCACCCGACACCAGGACCTTCGTGTCGGGGGCCTGCGATGCCTCTGCTAAACTGTGGGATGTGCGCGAGGGCATGTGCAGACAGACCTTTACTGGGCATGAATCTGACATCAATGCCATCTGTTTCTTCCCTAACGGTAATGCTTTTGCCACCGGCTCGGACGATGCCACCTGCCGCCTGTTTGACCTGCGCGCCGACCAGGAGCTGATGGTTTATTCCCACGACAACATCATCTGTGGCATCACCTCCGTAGCCTTCTCCAAGAGCGGCCGCCTCCTGCTGGCTGGATACGATGACTTCAACTGCAACGTGTGGGACAGCCTGAAGGCCGACCGTGCAGGTGTGTTGGCTGGCCATGATAACCGCGTGAGCTGTCTGGGCGTGACCGATGACGGCATGGCCGTGGCTACAGGGTCCTGGGACAGCTTCCTCAAGATCTGGAACTGAACTCTGAAGGTGCTTTCAACACAACATGTCCCGCACAATGTCATTTGAACTCCAAAGTTGACTGGAAGACCATTCCAACTTTAGAATGTTAAAATTCACAGCATCGTCAACAAGAACACCTTATAAAACTGACTCAGACACCACCACGAAAAAgagaaaacgaaaaaaaaaaacttctaaggGAAAACGATGCCTTTCCTACACAAAGAAGAGCACAATTTGTTTTATCACCTAccgtaaaaaagaaaagaaaaaaaaaaaagaagaattccTGTGGTATCAAATGAATAACTTTGTGCATTCCCTTTTCGGACCATTCTGTGTCACCCTGTAAGAGAAACTAGAAACACTATCATCCCACGCTTGTGTATCATGTGTCTAGAAAGCAAATGTTTGGAGTGTAATTGTACAAATTATTTAACTTTCTTTCgttcttttaaagaaaaaaagttcttttATCAAGTTGATggttatacttttttttttttttttttttttttttttttttttttttttttttttttttttttattattttattttagatatgttCCTAATAGTTTTAGGAAAATCTTAATCCTGTAAAACCGTGCGTGAGAAAGTTTAAGACTTAAGAATAAGAtgcgttttaaaaaaaagtgtaaaaggcTGAATTTTTAGAATTTAGATCCAGAAGGAAGAGCAGCTTTTTCTGAAGATGCCAatcatgcatttttattttatttttagtttgtttgttgtttttgttcttattcTGTAAATGGTGCACTAGATTGCTCTAGAGAGCGAGCGCGCGAGAGCGAATGAATGAACGAGTGAATACGTGAAAATAAGTGAATGAATGCATGAGTGATTAAGTGTGAATAATTTTGAATGCGTGTAAAAgtagtcttcttcttcttcttattcatGAGCGCGACTTAAGATGCCGTGCGAGGAAATCGTGCGAGGCTCTCGCTTGTGAAAATCACGATTCGCGTCGTCGGGCGGCGAAGGCGAAAGCGACGGCCCCGAGCAGCTTTCACTTCTTGAACTGTTCACCTTGTTAAACCGAGCTGTTTTCTGAGCTGTCAGCAAAAGACTGGGTAATAAGAACAGCCTTAGTTTTCTAAACCTGTTAATCATCTTCATCAttctcttcttcatcttcttcatcttcatcaccgTCTGTCTATCTGTGCATTAGTTAACCTTGGATGTGAACACACCGGTTCTGTTCTTCACCGAAGAGAAAAACACCATAGAGACGCCATATCTGTCTTTGAGAGATTTTACCATTTTCTGAGTCTTGAGGTACTCTCGCGTCATTTATCTGAAAATGGCTGCTTGTAAATATGAGTATCCGACTTGCACGCGAATGCAGCATTATTATATCCTAGctaatttttcttttcctgtCTCGTCACAGCTTCGTTTGCACAATAAGAAACTTGACTAATGTTTTACGCGTTAACTaaccaagcacacacacacacacacacacac
>XM_022675547.1
CCCATCTCGTTGTCTGATGGCCGGATGAGAAGCGGAGCGAGCGGAGGAGAGCGGCTCCTTCAAGGAAGGCAACGGGGAAGCGGAGTCAGACAGCCGGATTTACACCGCCCGAATCCCGCCTTACGGACCTCAGCGACCGGCGCTTTGTGTTGCGGCTGAACGGTGTGCTCCAGAGCTTCCAGAAGCGGGCTGTGTTCTGGTTCTGGAGCGTTTTATTTCTGAGATCTGGACTGGTTTGTGAGGACCGAGCCTAGTtgggtttagtttagcttagcgaGCTAGCTCGTCTTGTTGCTCGTCGTTGATGCGTGGATTTGACAGCTGCACAGTCGGGTTTATTCGGTCAATGCCATATAACGTTAAAACAAGGCCAGCTCCCACTGAGTACAGATCAAAGTGTGTCCCGACAGCAGGAGAGAGGAAGAGCtttagaagaagaaaatgagtGAACTGGACCAGTTACGCCAGGAGGCTGAGCAGCTCAAAAACCAGatcagagATGCGAGGAAAGCCTGTGCAGATGCCACACTATCACAGATCACAGCCAACATCGACCCTGTTGGCCGAATCCAGATGCGCACAAGGCGAACGCTGAGAGGACATTTGGCTAAAATCTATGCCATGCACTGGGGCTCTGACTCCAGGCTGCTGGTTAGTGCATCCCAGGATGGTAAACTCATTATTTGGGACAGCTATACCACAAATAAGGTCCATGCCATTCCTCTGCGCTCATCCTGGGTGATGACCTGTGCCTACGCTCCCTCAGGGAACTACGTGGCCTGTGGAGGCCTGGACAACATCTGTTCCATCTACAGTCTGAAGACTCGCGAGGGTAATGTGCGCGTCAGCCGTGAACTGGCTGGACACACAGGTTACCTGTCATGCTGTCGCTTCGTTGATGACAACCAGATCGTCACGAGTTCTGGCGACACCACCTGtgctcTCTGGGATATAGAGACCGGTCAGCAGACGACCACTTTTGCCGGCCACACCGGAGACGTGATGAGCCTGTCCCTGGCACCCGACACCAGGACCTTCGTGTCGGGGGCCTGCGATGCCTCTGCTAAACTGTGGGATGTGCGCGAGGGCATGTGCAGACAGACCTTTACTGGGCATGAATCTGACATCAATGCCATCTGTTTCTTCCCTAACGGTAATGCTTTTGCCACCGGCTCGGACGATGCCACCTGCCGCCTGTTTGACCTGCGCGCCGACCAGGAGCTGATGGTTTATTCCCACGACAACATCATCTGTGGCATCACCTCCGTAGCCTTCTCCAAGAGCGGCCGCCTCCTGCTGGCTGGATACGATGACTTCAACTGCAACGTGTGGGACAGCCTGAAGGCCGACCGTGCAGGTGTGTTGGCTGGCCATGATAACCGCGTGAGCTGTCTGGGCGTGACCGATGACGGCATGGCCGTGGCTACAGGGTCCTGGGACAGCTTCCTCAAGATCTGGAACTGAACTCTGAAGATGTCATTTGAACTCCAAAGTTGACTGGAAGACCATTCCAACTTTAGAATGTTAAAATTCACAGCATCGTCAACAAGAACACCTTATAAAACTGACTCAGACACCACCACGAAAAAgagaaaacgaaaaaaaaaaacttctaaggGAAAACGATGCCTTTCCTACACAAAGAAGAGCACAATTTGTTTTATCACCTAccgtaaaaaagaaaagaaaaaaaaaaaagaagaattccTGTGGTATCAAATGAATAACTTTGTGCATTCCCTTTTCGGACCATTCTGTGTCACCCTGTAAGAGAAACTAGAAACACTATCATCCCACGCTTGTGTATCATGTGTCTAGAAAGCAAATGTTTGGAGTGTAATTGTACAAATTATTTAACTTTCTTTCgttcttttaaagaaaaaaagttcttttATCAAGTTGATggttatacttttttttttttttttttttttttttttttttttttttttttttttttttttttattattttattttagatatgttCCTAATAGTTTTAGGAAAATCTTAATCCTGTAAAACCGTGCGTGAGAAAGTTTAAGACTTAAGAATAAGAtgcgttttaaaaaaaagtgtaaaaggcTGAATTTTTAGAATTTAGATCCAGAAGGAAGAGCAGCTTTTTCTGAAGATGCCAatcatgcatttttattttatttttagtttgtttgttgtttttgttcttattcTGTAAATGGTGCACTAGATTGCTCTAGAGAGCGAGCGCGCGAGAGCGAATGAATGAACGAGTGAATACGTGAAAATAAGTGAATGAATGCATGAGTGATTAAGTGTGAATAATTTTGAATGCGTGTAAAAgtagtcttcttcttcttcttattcatGAGCGCGACTTAAGATGCCGTGCGAGGAAATCGTGCGAGGCTCTCGCTTGTGAAAATCACGATTCGCGTCGTCGGGCGGCGAAGGCGAAAGCGACGGCCCCGAGCAGCTTTCACTTCTTGAACTGTTCACCTTGTTAAACCGAGCTGTTTTCTGAGCTGTCAGCAAAAGACTGGGTAATAAGAACAGCCTTAGTTTTCTAAACCTGTTAATCATCTTCATCAttctcttcttcatcttcttcatcttcatcaccgTCTGTCTATCTGTGCATTAGTTAACCTTGGATGTGAACACACCGGTTCTGTTCTTCACCGAAGAGAAAAACACCATAGAGACGCCATATCTGTCTTTGAGAGATTTTACCATTTTCTGAGTCTTGAGGTACTCTCGCGTCATTTATCTGAAAATGGCTGCTTGTAAATATGAGTATCCGACTTGCACGCGAATGCAGCATTATTATATCCTAGctaatttttcttttcctgtCTCGTCACAGCTTCGTTTGCACAATAAGAAACTTGACTAATGTTTTACGCGTTAACTaaccaagcacacacacacacacacacacac

Function

symbol description
gnb1b Predicted to enable signaling receptor complex adaptor activity. Acts upstream of or within positive regulation of neutrophil migration and posterior lateral line neuromast primordium migration. Predicted to be part of heterotrimeric G-protein complex. Predicted to be active in cytoplasm. Is expressed in blastomere; female organism; head; and lateral line system. Human ortholog(s) of this gene implicated in acute lymphoblastic leukemia; autosomal dominant non-syndromic intellectual disability 42; and myelodysplastic syndrome. Orthologous to human GNB1 (G protein subunit beta 1).
gnb1 Enables GTPase activity and GTPase binding activity. Predicted to be involved in adenylate cyclase-activating dopamine receptor signaling pathway and cellular response to prostaglandin E stimulus. Predicted to act upstream of or within several processes, including cardiac muscle cell apoptotic process; cellular response to hypoxia; and sensory perception of taste. Located in extracellular exosome and lysosomal membrane. Part of heterotrimeric G-protein complex. Implicated in acute lymphoblastic leukemia; autosomal dominant non-syndromic intellectual disability 42; and myelodysplastic syndrome.

NR:

description
PREDICTED: guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 isoform X2

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005515 protein binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K04536 GNB1; guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675546.1 True 2948 mRNA 0.46 11 22516156 22560288
XM_022675547.1 False 2921 mRNA 0.46 11 22516156 22560289

Neighbor

gene id symbol gene type direction distance location
LOC103023872 rbm5,LOC108433690,LOC108271979,LOC107696464 coding downstream 44564 22455022 ~ 22471592 (-)
LOC111193663 LOC108433669 coding downstream 65757 22445889 ~ 22450399 (-)
LOC111193748 LOC108271854,LOC106566064,LOC107587570,LOC107723915,LOC107696468 coding downstream 149458 22242530 ~ 22366698 (-)
LOC103025049 LOC108415076,LOC108271512,LOC107723929,LOC107708110,LOC107587643,LOC107595459,LOC107666006 coding downstream 288501 22217315 ~ 22227655 (-)
LOC103041116 LOC108429995,LOC101466508,LOC102201470,LOC105357607 coding downstream 945847 21568526 ~ 21570309 (-)
mst1 mst1,LOC107707265,LOC107666157,LOC107595414 coding upstream 51217 22611506 ~ 22645591 (-)
LOC103024805 cacna2d2,LOC108433686,LOC108271986 coding upstream 109867 22670156 ~ 23092965 (-)
LOC103041502 NA coding upstream 707266 23267555 ~ 23273813 (-)
LOC103039131 LOC108433682 coding upstream 721524 23281813 ~ 23288883 (-)
rps10 rps10,LOC107595410,LOC102793608 coding upstream 781423 23341712 ~ 23347990 (-)
G112994 NA non-coding downstream 65044 22390203 ~ 22451112 (-)
G112988 NA non-coding downstream 131813 22346630 ~ 22384343 (-)
G112990 NA non-coding downstream 154197 22361218 ~ 22361959 (-)
G112977 NA non-coding downstream 170598 22342255 ~ 22345558 (-)
G112986 NA non-coding downstream 182958 22332785 ~ 22333198 (-)
G113008 NA non-coding upstream 19184 22579473 ~ 22584023 (-)
G113022 NA non-coding upstream 102292 22662581 ~ 22666345 (-)
G113030 NA non-coding upstream 144110 22704399 ~ 22705663 (-)
G113036 NA non-coding upstream 200408 22760697 ~ 22762206 (-)
G113037 NA non-coding upstream 206752 22767041 ~ 22769078 (-)
LOC111193749 NA other downstream 38828 22473702 ~ 22477328 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other downstream 85772 22376312 ~ 22430384 (-)
G112778 LOC103032844,LOC108430042,LOC108246801,LOC105893128 other downstream 863422 21601244 ~ 21652734 (-)
LOC103040822 LOC108429994 other downstream 930677 21581745 ~ 21585479 (-)
syngr1 syngr1 other downstream 1960729 20458758 ~ 20555427 (-)
LOC111193684 NA other upstream 34123 22594412 ~ 22605138 (-)
LOC103039435 tusc2,LOC108433681,LOC103039435,LOC107696420,LOC107595412,LOC107724521 other upstream 738939 23299228 ~ 23312013 (-)
G113190 NA other upstream 992060 23552349 ~ 23553064 (-)
LOC103040267 LOC108433657 other upstream 998812 23559101 ~ 23563807 (-)
G113276 NA other upstream 1175665 23735954 ~ 23793461 (-)

Expression


Co-expression Network