G112778 (LOC103032844,LOC108430042,LOC108246801,LOC105893128)


Basic Information

Item Value
gene id G112778
gene name LOC103032844,LOC108430042,LOC108246801,LOC105893128
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 21601244 ~ 21652734 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU152441
tgtttttttgTTATTTGAAAagaagtgtattttattttatttaaagcagttttaaatTCAGCTAACAGGAGTCCATGATGCGTCTCATGGAGCCGAACCTCATCATGGAGTTAATGCCCATATCCCTGTAGCTCCTGTATTCTCCAGGCCTCAGGTACACCATCCTGCCTCTATAGTTAGGCTGCTCGTACATCAGCCAGTGGCCGTCCATCACGTTGCAGGACTGGATATCGGACATGCGGTAACGGTCAGAGAAGGAGTCACAGTCCTCCAGGATCTCGTGCATCTGGCCACCGAAATTCTCTCGCTCATAGACCCTCATTCTAAAGGAGCCACGATGCATTGGGATCATCCTGCAGGAGCGGATGCAGTCACTCATGGTCATTCCCATCAGCCGCTGGTTGTCAGGATACTCTCCTCTACGGGCCAGCATCTGATGGCCCATGAAGTTGGGCCTCTCATAGACCATGAAGCAGCCGCTCTCCACCCTGCAGGAGTTGCAGCGGCTCAAGTAGGAGGTCAGCTCAGGGCAGTCACTGCTGGTCTCATAGGAACGTCCCTGAAAGTTCCTGTCCTCGTAGAAGATAATCTAGAAAGGAAAGCAGGACCAGATAAACTCAGAGATAAACTCAGAAAGATCTTACAGAGCTTTA

Function

NR:

description
gamma-crystallin M3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU152441 True 653 TUCP 0.49 3 21601244 21652734

Neighbor

gene id symbol gene type direction distance location
LOC103041116 LOC108429995,LOC101466508,LOC102201470,LOC105357607 coding downstream 30935 21568526 ~ 21570309 (-)
LOC103040199 mob4,LOC103040199,LOC106586370,LOC105016277,LOC107389570,LOC106582314,LOC105899369 coding downstream 68170 21522609 ~ 21533074 (-)
LOC111193678 NA coding downstream 94092 21503006 ~ 21507152 (-)
LOC103031880 LOC103031880,LOC108430001,LOC108272922 coding downstream 114978 21478102 ~ 21486266 (-)
LOC103042502 NA coding downstream 709898 20871655 ~ 20891346 (-)
LOC103025049 LOC108415076,LOC108271512,LOC107723929,LOC107708110,LOC107587643,LOC107595459,LOC107666006 coding upstream 564581 22217315 ~ 22227655 (-)
LOC111193748 LOC108271854,LOC106566064,LOC107587570,LOC107723915,LOC107696468 coding upstream 589796 22242530 ~ 22366698 (-)
LOC111193663 LOC108433669 coding upstream 793155 22445889 ~ 22450399 (-)
LOC103023872 rbm5,LOC108433690,LOC108271979,LOC107696464 coding upstream 802288 22455022 ~ 22471592 (-)
LOC103023031 gnb1,gnb1b,LOC105895937,LOC108272010,LOC107666091,LOC107595416,LOC103044197 coding upstream 863422 22516156 ~ 22560289 (-)
LOC111193683 NA non-coding downstream 35593 21565100 ~ 21565651 (-)
LOC111193682 NA non-coding downstream 36689 21562738 ~ 21564555 (-)
LOC111193681 NA non-coding downstream 38529 21562277 ~ 21562715 (-)
LOC111193680 NA non-coding downstream 51142 21543486 ~ 21550102 (-)
LOC111193677 NA non-coding downstream 98354 21495309 ~ 21502890 (-)
G112798 NA non-coding upstream 72885 21725619 ~ 21726241 (-)
G112803 NA non-coding upstream 103923 21756657 ~ 21789837 (-)
G112801 NA non-coding upstream 106992 21759726 ~ 21761285 (-)
G112810 NA non-coding upstream 121842 21774576 ~ 21775968 (-)
G112807 NA non-coding upstream 125111 21777845 ~ 21800796 (-)
LOC103040822 LOC108429994 other downstream 15765 21581745 ~ 21585479 (-)
syngr1 syngr1 other downstream 1045817 20458758 ~ 20555427 (-)
G112507 NA other downstream 1283907 20272000 ~ 20317337 (-)
trnae-uuc_17 NA other downstream 1505233 20095940 ~ 20096011 (-)
LOC103032158 LOC108424749,LOC108273301 other downstream 1506918 20056171 ~ 20094326 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other upstream 723578 22376312 ~ 22430384 (-)
LOC111193749 NA other upstream 820968 22473702 ~ 22477328 (-)
LOC111193684 NA other upstream 941678 22594412 ~ 22605138 (-)
LOC103039435 tusc2,LOC108433681,LOC103039435,LOC107696420,LOC107595412,LOC107724521 other upstream 1646494 23299228 ~ 23312013 (-)
G113190 NA other upstream 1899615 23552349 ~ 23553064 (-)

Expression


Co-expression Network