G112525


Basic Information

Item Value
gene id G112525
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 20494049 ~ 20536792 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU152127
aaattaacattgttgttttattctataaactacagtcaacatttctcccaaattccaaataaaaatattgtcatttagagcttttatttgctgaaaatgagaaatgactaaaataacaacaccaaaaaaagatgcagagctagatagacctcaaataatgcaaagaaaacaagttcatattgataaagttttaagagttccgaaatcaatatttggtggaataaccctggtttttaatcacagtttttatgcatattggcatgttctcctccaccagtcttacacactgcttttggataactttatgccactcctggtgcaaaaattcaagcagttcagcttggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggtttttaatttggtaaaatcaaggaaaaacatcatcattaattggtctcttatttattttccagagctgtatatcaagaTCTGCACAAAGTTTGCTGTACTTAACTGCACCCATCAGGTTCAGCAAGAGCAGACTGAGATGAAAAGTGAAAAGAACTCGCCTGTGTCCCAGTATAATGTTTGTTTAATGTGCAAGTTTGGCATCTGAATATAAAAACCACAAATCACGTTGCTGTTGGCAGCTGCCTGTAGCCTTTGGTCATATCTTAACACTGCCGGTTAAGGACATGTCTGATCACAGTGCCTCAGTCTGCATTCTCTTCGACCACAGAAGAAAtggggtgtgtgttagtgaataTGTTCTTTGTCTGTCCGTATGCCTGTGTGTCTCTTGTCagtctctttgtctctgtgtggtgctggggaaggatggagggatggtgtgtggaggggaggggagggtaGTTAGATGGAGAGTAGGATTGGCTGTACTGCTAAACACATCTCTATACCACTCACAGATTACCTTGCATAACCAACCAGAGTAAGCCTGACTCATATGAGCATTTTGGGCCCATTTCCCaaagaaaacagtttattatgtttagtgtgtatatgtacttcatgaccacctccttgtttctacatatATTAACTATGATATGTGTTGACCATCCTATAGTCTTTAAACAGTGGAAAGAAAACAGTGctcaatgtttaaaaactccagcagcactgctgtgtctgatccacctGTCACTGCACTGCTGGGAATGACCTGCCATCCATATAATAGTGTAAAGGGATAATAATATGCAgtaagtatgcagagaaacagatacaggactacaaaTATAAAATTGGTGTAGagacaaggaggtggtcataatgttgtactatatacagctctggaaaattttaagagaccacttcagtttctgaatcagtttctctgattttactatttataggtaaatgtttgagtaaaatgaacattgatgttttattctataaactacgcacaccagttcagaaatcaatatttggtggaataaccctggtttttaatcacatttttatgcatctttgcatattctcctccaccagtcttacacactgcttttggttaactttatgccactcctggtgcagaaattcaagcagttctgcttggttttatggcttgtgatcatccatcttcctcttgaataaattccagagattttcaatttggtaaaattgaagaaactcatattttttaagtggtctcttattttttttttccagagctgtagatatacATCTATATGTTATATTCCATGCATCTGTAATTGCttcaaattttatatttaaaggaaTAGTTAGGCTAATGTAATGAGCTAGTGGTCACTAGTTCATGTCACTtgcttcattaaaaaataaaacataatttcagCCATATAAATGATATCAACTCCTTTAAATTTGAATCagtgatgattttttttaatcggtTGGGCCCAATTTCagttatatttagttttatttatttttttaggatgtatttattaaaacagtacATAATGCCAGTAATATGTGAATAGTCATGATGAAGCtgtaaaaataagtatttatttaaaaagtgacgAGTGTTCAAATCTTTATTTTCAGTGCTACTCGCATTGGGAAGACCTGTTGGACTTTCCAGACACAAGATAAACCAATTAAATGGGGGCTAATTTACACAGTTGATGGGAATTTCCTGTTAAATGCTCTTTATTAGTCTTGTATAATCTGTGCTGGAAGGAAACAGGAGGTTGGGGTTAGCTATCGGGAGTGTTCTGCTGTTTCACTGTATCAGATAGTTCTATCGATGGTAATTTCAGATCACATCCTACAGACAAAACTCCAACTTTAGCAGAGctcaatatgtatatatatatagatctgtaaatgtgtaattgaatataaacattctcttttattttatggtATATTTAAAGATCATTCTGTGAAAAGTATGCATCGTTTtggtgtatgtgtatgtgtgaacttttttttattatttctgggaatacagttttattttggAATAATAATGACTGaaatcaaaatacaaaaaaaaataataataaagttggGAGACCAAACTATATAGCTGTGTTGAACTGTGTGATATCTGTGTTCATCTAGATATAGCTAGAGACAATAAAAACCAGTTTACTGAGTGCTACTGTTTTTGATGTGATGGATTTTAATCTAAACAGACAAtaagaaatcaataaataacaaaaaatcttaatt

Function

GO: NA

KEGG:

id description
ko04724 Glutamatergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU152127 True 2673 lncRNA 0.34 2 20494049 20536792

Neighbor

gene id symbol gene type direction distance location
tab1 tab1 coding downstream 706 20471276 ~ 20493343 (-)
mgat3 mgat3,LOC103038268,LOC107705910 coding downstream 30454 20384487 ~ 20463595 (-)
LOC103036891 NA coding downstream 215820 20233929 ~ 20278229 (-)
LOC103042289 mpv17l coding downstream 289360 20191862 ~ 20204689 (-)
c13h16orf45 cunh16orf45,c12h16orf45,clg09h16orf45,LOC103041783,LOC103355942,LOC101485480 coding downstream 303167 20143350 ~ 20190882 (-)
LOC103039925 cacng2,cacng2a,LOC107561356,LOC107680886,LOC107732897,LOC107729558,LOC107687643 coding upstream 25407 20562199 ~ 20642333 (-)
eif3d eif3d coding upstream 143870 20680662 ~ 20691319 (-)
LOC103042187 si:zfos-169g10.2,sstr3,LOC108424687,LOC107705906,LOC107666722,LOC107737981,LOC107555103 coding upstream 180854 20717646 ~ 20750401 (-)
fam83f NA coding upstream 310348 20847140 ~ 20868990 (-)
LOC103042502 NA coding upstream 334863 20871655 ~ 20891346 (-)
LOC111193746 NA non-coding downstream 117453 20373157 ~ 20376596 (-)
G112439 NA non-coding downstream 264038 20229746 ~ 20230011 (-)
LOC107196873 NA non-coding downstream 268865 20127319 ~ 20225184 (-)
LOC111193743 NA non-coding downstream 295014 20197239 ~ 20199035 (-)
G112431 NA non-coding downstream 327117 20165723 ~ 20166932 (-)
G112538 NA non-coding upstream 20764 20557556 ~ 20558339 (-)
G112547 LOC103040247,LOC108424720,LOC107737982,LOC107666673 non-coding upstream 160392 20697184 ~ 20700123 (-)
LOC111193676 NA non-coding upstream 174117 20710909 ~ 20711988 (-)
G112580 NA non-coding upstream 282647 20819439 ~ 20821014 (-)
G112587 NA non-coding upstream 298037 20834829 ~ 20835737 (-)
G112507 NA other downstream 176712 20272000 ~ 20317337 (-)
trnae-uuc_17 NA other downstream 398038 20095940 ~ 20096011 (-)
LOC103032158 LOC108424749,LOC108273301 other downstream 399723 20056171 ~ 20094326 (-)
zglp1 NA other downstream 651757 19834408 ~ 19842292 (-)
G112280 NA other downstream 760676 19732604 ~ 19733373 (-)
LOC103040822 LOC108429994 other upstream 1044953 21581745 ~ 21585479 (-)
G112778 LOC103032844,LOC108430042,LOC108246801,LOC105893128 other upstream 1064452 21601244 ~ 21652734 (-)
LOC103026049 slc38a3b,slc38a3,LOC108411719,LOC107666102,LOC108271853,LOC107723914 other upstream 1839520 22376312 ~ 22430384 (-)
LOC111193749 NA other upstream 1936910 22473702 ~ 22477328 (-)
LOC111193684 NA other upstream 2057620 22594412 ~ 22605138 (-)

Expression


Co-expression Network