G112407


Basic Information

Item Value
gene id G112407
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 20020836 ~ 20036804 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU151956
GCATATCTCTTGtatatatataagtatatttcaATGTCACCTCACAAAATCAATGCTTTCtctaaacctttttttattttaggacaatcatgtttagtgttttaataatgtattttttttgctaccTAAATTAGGAAACATGTTGTTTCATTGGTTCAAgccaataaaacacaaaacagaaggAGTTGGATCAGATCTACCTTCACCTTCTTTGTCTTATTTTCAAGTTTTGGACAAAAACATGCCTTATGATATGTGATATGGAAAGATAAGATGTTGCCTTAAGTGCTGTTATATATTGAGCGTCTCCTCAGGTTTCGGAAACAGGCGTTGTTCACCGTGTGACTGTAAGTTCTCCATCTTTCTTTCGATGAAGAACCTTGTTTTCTGGGAAAGAAGTTTAAAGAGATGAAGTTCAGGAGAAGCAGTTTAAGATTCAgttaaagaatgaatgaatgaagaatTCCAAACTTGATCTGAATGCAGGAAGTCTTAAATGTAAAAACGAAGTGTGTACATAGTGCCTCTGTAAATATCCTCCTCTGTTGCTCAGTGCTTTTTTGTATTaagtttgtacattttaaaccTCAGACTTttgtaaatgaaaaaatgtgctttatttattgCGTATCTATATAAActtgctgttttgttttctgttctttttgctTTGTGTGGAACACAAGGTCAGTCTTGTGCAGATAAAATAGATTTGCACTGTTCAGACGAGAGATGAGCCATGTTAACCTCATTATGTTGTATGAATGACATCCAAGGGCACTACCATAGGAGAAGATTCACATGGATAAATCACAATGTGAAAAGCTGGGAAACGTGAACTGTAACATTTGTGCCTTTCTGTACTGTTAATGTTAAAGCGGCATTGAAGTTGGgagatttttgtttgtttgtttgtttttttcaagtACAATATGTTTACTACAGGTATAATATGTCCGTTGGATTGAGTGCACACAGAGCTTATCTTATAGACCACTGGGTTTGATATTATATTTCCGATGaaggaaacaaaacaaaataattgctGACTTGTGTTTGTTCATTATTTTGGgcaattaaatatgttttaaaatacatattgtgtgttttggtg

Function

GO:

id name namespace
GO:0008865 fructokinase activity molecular_function
GO:0004396 hexokinase activity molecular_function
GO:0019200 carbohydrate kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151956 True 1114 lncRNA 0.33 2 20020836 20036804

Neighbor

gene id symbol gene type direction distance location
ap1m2 ap1m2 coding downstream 12168 19997621 ~ 20008668 (-)
cdkn2d cdkn2d coding downstream 24558 19992625 ~ 19996278 (-)
fdx1l fdx1l coding downstream 171526 19843525 ~ 19849310 (-)
LOC103032470 LOC105013178,LOC103022087,LOC100712378,LOC107596217 coding downstream 186951 19831362 ~ 19833885 (-)
LOC103047713 LOC108424741 coding downstream 235207 19771936 ~ 19785629 (-)
c13h16orf45 cunh16orf45,c12h16orf45,clg09h16orf45,LOC103041783,LOC103355942,LOC101485480 coding upstream 106546 20143350 ~ 20190882 (-)
LOC103042289 mpv17l coding upstream 155058 20191862 ~ 20204689 (-)
LOC103036891 NA coding upstream 197125 20233929 ~ 20278229 (-)
mgat3 mgat3,LOC103038268,LOC107705910 coding upstream 347683 20384487 ~ 20463595 (-)
tab1 tab1 coding upstream 434472 20471276 ~ 20493343 (-)
G112390 keap1 non-coding downstream 61373 19956040 ~ 19959463 (-)
G112281 LOC108424739 non-coding downstream 283606 19736327 ~ 19737230 (-)
G112265 NA non-coding downstream 309644 19605473 ~ 19711192 (-)
G112259 NA non-coding downstream 388419 19627374 ~ 19632417 (-)
G112216 NA non-coding downstream 519248 19498103 ~ 19501588 (-)
LOC107196873 NA non-coding upstream 90515 20127319 ~ 20225184 (-)
G112431 NA non-coding upstream 128919 20165723 ~ 20166932 (-)
LOC111193743 NA non-coding upstream 160435 20197239 ~ 20199035 (-)
G112439 NA non-coding upstream 192942 20229746 ~ 20230011 (-)
LOC111193746 NA non-coding upstream 336353 20373157 ~ 20376596 (-)
zglp1 NA other downstream 178544 19834408 ~ 19842292 (-)
G112280 NA other downstream 287463 19732604 ~ 19733373 (-)
LOC103026630 LOC103026630,LOC108424735,LOC105910165,LOC105910166,LOC107705921,LOC107568399,LOC107676721 other downstream 384390 19588034 ~ 19636446 (-)
LOC103029406 LOC556764,LOC108424762,LOC105913225 other downstream 540929 19466553 ~ 19479907 (-)
G112125 NA other downstream 795752 19224602 ~ 19225084 (-)
LOC103032158 LOC108424749,LOC108273301 other upstream 19367 20056171 ~ 20094326 (-)
trnae-uuc_17 NA other upstream 59136 20095940 ~ 20096011 (-)
G112507 NA other upstream 235196 20272000 ~ 20317337 (-)
syngr1 syngr1 other upstream 421954 20458758 ~ 20555427 (-)
LOC103040822 LOC108429994 other upstream 1544941 21581745 ~ 21585479 (-)

Expression


Co-expression Network