RNA id: TU151956


Basic Information

Item Value
RNA id TU151956
length 1114
lncRNA type sense_over
GC content 0.33
exon number 2
gene id G112407
representative True

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 20020836 ~ 20036804 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCATATCTCTTGtatatatataagtatatttcaATGTCACCTCACAAAATCAATGCTTTCtctaaacctttttttattttaggacaatcatgtttagtgttttaataatgtattttttttgctaccTAAATTAGGAAACATGTTGTTTCATTGGTTCAAgccaataaaacacaaaacagaaggAGTTGGATCAGATCTACCTTCACCTTCTTTGTCTTATTTTCAAGTTTTGGACAAAAACATGCCTTATGATATGTGATATGGAAAGATAAGATGTTGCCTTAAGTGCTGTTATATATTGAGCGTCTCCTCAGGTTTCGGAAACAGGCGTTGTTCACCGTGTGACTGTAAGTTCTCCATCTTTCTTTCGATGAAGAACCTTGTTTTCTGGGAAAGAAGTTTAAAGAGATGAAGTTCAGGAGAAGCAGTTTAAGATTCAgttaaagaatgaatgaatgaagaatTCCAAACTTGATCTGAATGCAGGAAGTCTTAAATGTAAAAACGAAGTGTGTACATAGTGCCTCTGTAAATATCCTCCTCTGTTGCTCAGTGCTTTTTTGTATTaagtttgtacattttaaaccTCAGACTTttgtaaatgaaaaaatgtgctttatttattgCGTATCTATATAAActtgctgttttgttttctgttctttttgctTTGTGTGGAACACAAGGTCAGTCTTGTGCAGATAAAATAGATTTGCACTGTTCAGACGAGAGATGAGCCATGTTAACCTCATTATGTTGTATGAATGACATCCAAGGGCACTACCATAGGAGAAGATTCACATGGATAAATCACAATGTGAAAAGCTGGGAAACGTGAACTGTAACATTTGTGCCTTTCTGTACTGTTAATGTTAAAGCGGCATTGAAGTTGGgagatttttgtttgtttgtttgtttttttcaagtACAATATGTTTACTACAGGTATAATATGTCCGTTGGATTGAGTGCACACAGAGCTTATCTTATAGACCACTGGGTTTGATATTATATTTCCGATGaaggaaacaaaacaaaataattgctGACTTGTGTTTGTTCATTATTTTGGgcaattaaatatgttttaaaatacatattgtgtgttttggtg

Function

GO:

id name namespace
GO:0008865 fructokinase activity molecular_function
GO:0004396 hexokinase activity molecular_function
GO:0019200 carbohydrate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151930 lncRNA downstream 61373 19956040 ~ 19959463 (-) True G112390
TU151812 lncRNA downstream 183264 19834440 ~ 19837572 (-) False zglp1
TU151770 lncRNA downstream 283606 19736327 ~ 19737230 (-) True G112281
TU151753 lncRNA downstream 309644 19605473 ~ 19711192 (-) True G112265
TU151958 lncRNA upstream 19367 20056171 ~ 20058913 (-) False LOC103032158
TU151964 lncRNA upstream 90515 20127319 ~ 20224106 (-) False LOC107196873
TU151965 lncRNA upstream 90515 20127319 ~ 20143033 (-) False LOC107196873
TU151968 lncRNA upstream 90515 20127319 ~ 20225184 (-) False LOC107196873
TU151967 lncRNA upstream 101786 20138590 ~ 20143033 (-) True LOC107196873
XM_007231304.3 mRNA downstream 12168 19997621 ~ 20008668 (-) True ap1m2
XM_007231305.3 mRNA downstream 24558 19992625 ~ 19996278 (-) True cdkn2d
XM_015600743.2 mRNA downstream 171526 19843525 ~ 19849310 (-) True fdx1l
XM_022675518.1 mRNA downstream 178544 19834408 ~ 19842292 (-) True zglp1
XM_022675519.1 mRNA downstream 179115 19834408 ~ 19841721 (-) False zglp1
XM_022675075.1 mRNA upstream 21229 20058033 ~ 20094326 (-) True LOC103032158
XM_007231296.2 mRNA upstream 106546 20143350 ~ 20190882 (-) False c13h16orf45
XM_007231295.2 mRNA upstream 106546 20143350 ~ 20190882 (-) True c13h16orf45
XM_022675522.1 mRNA upstream 155058 20191862 ~ 20204689 (-) True LOC103042289
XM_007231297.3 mRNA upstream 155058 20191862 ~ 20204672 (-) False LOC103042289
TU151769 other downstream 287463 19732604 ~ 19733373 (-) True G112280
TU151751 other downstream 384390 19588034 ~ 19636446 (-) False LOC103026630
TU151750 other downstream 384390 19632579 ~ 19636446 (-) True LOC103026630
TU151673 other downstream 540954 19476483 ~ 19479882 (-) False LOC103029406
TU151548 other downstream 795752 19224602 ~ 19225084 (-) True G112125
trnae-uuc_17 other upstream 59136 20095940 ~ 20096011 (-) True trnae-uuc_17
TU152109 other upstream 235196 20272000 ~ 20317337 (-) True G112507
TU152445 other upstream 1544941 21581745 ~ 21585049 (-) True LOC103040822
TU152441 other upstream 1564440 21601244 ~ 21652734 (-) True G112778
XR_002650693.1 other upstream 2339508 22376312 ~ 22430384 (-) False LOC103026049

Expression Profile