psmd12 (psmd12)


Basic Information

Item Value
gene id psmd12
gene name psmd12
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 19359344 ~ 19366934 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022675508.1
GCCAGGGGGAGCAGAATATGCAGGGAACTTGTGAAAGCACACCACCTCCTGGCGGCTGTAGCTGTAACTCGGTGTATTTCCGCAGCGGCGACCACAGAAGAAATAGGTTTCGTCTGCAGCGCTTAGCTGTGTAGCACATTAGCAGCCTGTGTGGAAGGTATCGGGTGAATTTGTTGTTCTCTTTTAAACcacagttaaataaatataaagatgtCTGACGACAGGTCTGAGAGGTCGGATGGCAAGATTGTGAAGATGGAGATCGACTACAGCTCGACTGTAGACCAGCGTCTCCCTGAGTGTGAGAAAATGGCAAAAGAAGGGAGACTTCAGGAAGCTGTTGAAGGCCTGCTGTCTCTGGAGAAGCAAACAAGGACGGCTTCAGACATGGTGTCCACATCCAGGATTTTGGTGGCCATAGTGCAGATGTGTTATGAGGCTAAAGACTGGGATTCCCTGAATGAGAACATTATGCTGTTGTCAAAGAGGAGGAGTCAGCTGAAACAGGCTGTTGCTAAGATGGTGCAGGAGTGTTACAAATATGTGGATGCTCTTACTGACCTACCCACCAAACTGAGGCTCATCGACACGCTTCGAACCGTCACAGCTGGAAAGATCTATGTGGAGATTGAGCGTGCCAGGCTCACTAAGACACTTGCCAACATTAAAGAACAGAGTGGAGAGGTGAAAGAGGCTGCATCCATTCTTCAGGAGCTACAGGTGGAAACGTATGGCTCCatggagaagaaggagaaggtGGAGTTTATTCTGGAGCAGATGAGGCTGTGCATCGCTGTTAAAGACTACATCCGCACTCAGATCATCAGCAAGAAGATCAACACTAAGTTCTTCCAGGAGGAGGGCACTGAGGAGTCCAAGTTGAAGTACTACAATCTAATGATTCAAGTGGACCAGCATGAAGGGTCTTACCTGTCCATCTGCAAACATTACCGAGCCATTTACGACACTCCCTGCATCCTGGAGGACAGCTCCAAATGGCAGCAGGCCCTAAAGAGTGTGGTTCTGTACGTAGTTCTGTCTCCTTATGACAATGAACAGTCTGATCTGGTTCATCGAATCAGCACAGACAAGAAACTTGAAGAAATCCCCAAATACAAGGACCTTCTGAAGCAGTTCACCACCATGGAGCTAATGCGCTGGTCCTCTCTGGTGGAGGATTATGGGAAGGAGCTGCGTGAGGGGTCTCCAGACAGCCCTGCCACTGATGTCTTTACCTACTCAGAGGAGGGAGAGAAGAGATGGCAGGACCTCAAAAACAGAGTAGTAGAACATaaCATACGGATTATGGCCAAGTATTACACAAGAATCACAATGAAGAGGATGGCTGGACTGCTTGACCTTTCCATTGATGAGTCGGAGGAGTTTCTGTCCAACCTGGTCGTGAACAAGACCATCTATGCTAAAGTTGACCGTCTGGCAGGTATCATCAATTTCCAGAGGCCCAAAGACCCCAACGATCTGCTGAACGACTGGTCCCACAAACTGAACTCTCTCATGTCCCTTGTCAACAAAACCACCCACCTCATCGCCAAAGAGGAGATGATCCACAATCTGCAGTAGCGAAGCTTCCTGTTTTGGTTGTTGGATTGCTTGCGATCTGACtgattgaattattattttgattgatatttttttctctctccacctTTTTGTCTAGGGGTGGAATTACTAAATCTGTCCTTTTTTGATGTCCCAACAGTTGGCACAATTGAGAATTTATTTTGCAGTAAAAACAAAGCTGTGCTTAAGAACAGGCATGTTCTTTCATGGATCTTTTGCCTGTTATTTACCTGAACTGAGCTTTGGTGTTGGTCCAAATTCAGACTTATTCTAATTGGATATTGGTTGAGAGTGGGGCTAGGATCTTTATTAACAGCAGAAAAATCTGTCAATCTTGAATCTGTACTGACACATCTGTACTCCACACTCTGTGCACATTAAGCCTGGGAGTGAGTTGAAGAGTTTATCAGTGATTCTCCTTTTTAGTCCATGTTGCTGAGGAGCGTTTCTGTACACACTGTGTAGGTAGGGTGTTAAATTCAGTGTTCACCTCACATGCAGGTTCATGGCCTTGGTACATGAATATTTCAGATAGAAAATAATGAGGACAAATTGTATCGCTGTATACAACTGTTGCTTCATGCTTGGTAACATGTTCTGTGTCTTTTGCGATGTACACATTAAAATCTTTTGGAAGATA

Function

symbol description
psmd12 Acts upstream of or within brain development; cranial skeletal system development; and kidney development. Predicted to be part of nuclear proteasome complex and proteasome regulatory particle, lid subcomplex. Predicted to be active in cytoplasm. Orthologous to human PSMD12 (proteasome 26S subunit, non-ATPase 12).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 12

GO: NA

KEGG:

id description
K03035 PSMD12, RPN5; 26S proteasome regulatory subunit N5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022675508.1 True 2221 mRNA 0.45 11 19359344 19366934

Neighbor

gene id symbol gene type direction distance location
tgfbrap1 tgfbrap1,LOC107596311,LOC107738304,LOC107688833,LOC107748533,LOC107660108 coding downstream 174955 19151478 ~ 19184389 (-)
LOC103041993 inpp4ab,LOC108437834,LOC108273053,LOC107566790 coding downstream 1004830 18288510 ~ 18354514 (-)
LOC103041078 cacnb4b,LOC108437833,LOC108272385,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 coding downstream 1077066 18232082 ~ 18282278 (-)
LOC103040586 LOC108437832 coding downstream 1150354 18191678 ~ 18208990 (-)
LOC103040268 LOC108437831,LOC108272774,LOC107596329,LOC107660144,LOC107705618 coding downstream 1175357 18173975 ~ 18183987 (-)
micall1 micall1,LOC107716893,LOC107569466,LOC107710163,LOC107694909 coding upstream 41802 19408736 ~ 19446161 (-)
LOC103028781 LOC103028781,LOC108424728 coding upstream 122844 19489778 ~ 19496459 (-)
LOC103027619 NA coding upstream 175336 19542270 ~ 19546674 (-)
LOC103022889 LOC108424738 coding upstream 350635 19717569 ~ 19723342 (-)
LOC103047713 LOC108424741 coding upstream 405002 19771936 ~ 19785629 (-)
G112186 NA non-coding downstream 7608 19351487 ~ 19351736 (-)
G112184 NA non-coding downstream 23292 19314404 ~ 19336052 (-)
G112185 NA non-coding downstream 25880 19320936 ~ 19333464 (-)
G112128 NA non-coding downstream 109082 19245226 ~ 19250262 (-)
G112126 NA non-coding downstream 119072 19240057 ~ 19240272 (-)
G112188 ppp1r12c non-coding upstream 14349 19381283 ~ 19387407 (-)
G112216 NA non-coding upstream 131169 19498103 ~ 19501588 (-)
G112265 NA non-coding upstream 238539 19605473 ~ 19711192 (-)
G112259 NA non-coding upstream 260440 19627374 ~ 19632417 (-)
G112281 LOC108424739 non-coding upstream 369393 19736327 ~ 19737230 (-)
G112125 NA other downstream 134260 19224602 ~ 19225084 (-)
G112029 NA other downstream 726484 18632201 ~ 18632860 (-)
G111970 dnpep,LOC106575848 other downstream 1254886 18103829 ~ 18104458 (-)
G111763 NA other downstream 1834958 17523646 ~ 17524386 (-)
G111664 NA other downstream 2592039 16764687 ~ 16767305 (-)
LOC103029406 LOC556764,LOC108424762,LOC105913225 other upstream 99619 19466553 ~ 19479907 (-)
LOC103026630 LOC103026630,LOC108424735,LOC105910165,LOC105910166,LOC107705921,LOC107568399,LOC107676721 other upstream 221100 19588034 ~ 19636446 (-)
G112280 NA other upstream 365670 19732604 ~ 19733373 (-)
zglp1 NA other upstream 467474 19834408 ~ 19842292 (-)
LOC103032158 LOC108424749,LOC108273301 other upstream 689237 20056171 ~ 20094326 (-)

Expression


Co-expression Network