G112107


Basic Information

Item Value
gene id G112107
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 19135119 ~ 19136233 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU151527
TGCCTCATGGTCTCCATCTCTCCAGACGACACAAAGCTGAGCAGTGCCCTCGAGATGGCGAGCCTCAGAGCACCAGCCTGGGCTGAGCGACCGCCGCCCTCCACATGGGCCTCCACGTCAAACCTGCCCAACATGCCTACAAAGTGCAGCGGGAACATCAGCTGctccctgagagagagagagagagagagagagagagagagagagagagaggattCAGAGGAGATTAATAGTGTATGTACACCTACAGATCATTAGTTCTCTTCTAAATCAGTTGAAACCCCTTTGTAAAATTGGTAGTGTTTTTCCCTGGTAAGGTTTGGACTGATTAAGCTCGTTTTGGTTCGTTCATTTTGATTTGGTCTGGTCTGAGGCTGAATTATGTTCTCACCACTAACAAACCACTTCCTatcataatagtaatagtaataataataaaataataataataagaagaattattataataatacattttatttaataggcACCTTTCTGTCACCCAAGGACACCGTTCAAAGTGTGTAAAatgcataataaaataaacataacacaaaaaattaaatacaaattttaaactaggtaaaaagaaaatgcaacTGGGTCAGATGGAAAAGGCAATTCTAAACATGTGGGTTTGAGTGCAGATTTAAACTGTGAAAGTGAGTTTATGTGGGTGATAAGGAATTCAAGAGCCATGGTGGTGAGACAGGCAAAGGGGACAGTCAAGTGAATGGAGGCAGACTGAAGGAGTAGAAACATGGAAAATGTTGAGAAGATATGGTGGAGAGAGTTTGTGGATGGCTTTGAAAGTGAACAGAAGAATTTTGTAATCAATGCGGAACTTAACCAGGAGCCAGTGAAGCTGATACAATACAGGAGTGAAGAGATGACAGGATGGGGTTCTGGTAAGGTACGGGCAGCAGAGTTCTGGACCAATTGAAGCTCATGGAGAGATTTGTGGGTGACTCTGTCAAGGAGGGAGTTTCAGTAATCCAAACGGTAAGGTTGTTTTGATCGCACTCAAATGATCTGGGAAGTTTTGGTTTAGTCTGGTGTGGCCTGGTTTAGTTCatttttggtttggtctggA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU151527 True 1093 lncRNA 0.42 2 19135119 19136233

Neighbor

gene id symbol gene type direction distance location
LOC103041993 inpp4ab,LOC108437834,LOC108273053,LOC107566790 coding downstream 780605 18288510 ~ 18354514 (-)
LOC103041078 cacnb4b,LOC108437833,LOC108272385,LOC107566792,LOC107688838,LOC107748538,LOC107705621,LOC107660102,LOC107596307 coding downstream 852841 18232082 ~ 18282278 (-)
LOC103040586 LOC108437832 coding downstream 926129 18191678 ~ 18208990 (-)
LOC103040268 LOC108437831,LOC108272774,LOC107596329,LOC107660144,LOC107705618 coding downstream 951132 18173975 ~ 18183987 (-)
LOC103039642 des,desmb,LOC108437828,LOC107660100,LOC107705613,LOC107566324,LOC107566784 coding downstream 1043083 18079358 ~ 18092036 (-)
tgfbrap1 tgfbrap1,LOC107596311,LOC107738304,LOC107688833,LOC107748533,LOC107660108 coding upstream 15245 19151478 ~ 19184389 (-)
psmd12 psmd12 coding upstream 223111 19359344 ~ 19366934 (-)
micall1 micall1,LOC107716893,LOC107569466,LOC107710163,LOC107694909 coding upstream 272503 19408736 ~ 19446161 (-)
LOC103028781 LOC103028781,LOC108424728 coding upstream 353545 19489778 ~ 19496459 (-)
LOC103027619 NA coding upstream 406037 19542270 ~ 19546674 (-)
G112100 NA non-coding downstream 3361 19113071 ~ 19131758 (-)
G112085 NA non-coding downstream 32201 19062090 ~ 19102918 (-)
LOC111193739 NA non-coding downstream 52334 19070606 ~ 19082785 (-)
G112093 NA non-coding downstream 65168 19068885 ~ 19069951 (-)
G112055 NA non-coding downstream 146830 18988075 ~ 18988289 (-)
G112126 NA non-coding upstream 103824 19240057 ~ 19240272 (-)
G112128 NA non-coding upstream 108993 19245226 ~ 19250262 (-)
G112184 NA non-coding upstream 178171 19314404 ~ 19336052 (-)
G112185 NA non-coding upstream 184703 19320936 ~ 19333464 (-)
G112186 NA non-coding upstream 215254 19351487 ~ 19351736 (-)
G112029 NA other downstream 502259 18632201 ~ 18632860 (-)
G111970 dnpep,LOC106575848 other downstream 1030661 18103829 ~ 18104458 (-)
G111763 NA other downstream 1610733 17523646 ~ 17524386 (-)
G111664 NA other downstream 2367814 16764687 ~ 16767305 (-)
G110969 NA other downstream 5274044 13860585 ~ 13861075 (-)
G112125 NA other upstream 88369 19224602 ~ 19225084 (-)
LOC103029406 LOC556764,LOC108424762,LOC105913225 other upstream 330320 19466553 ~ 19479907 (-)
LOC103026630 LOC103026630,LOC108424735,LOC105910165,LOC105910166,LOC107705921,LOC107568399,LOC107676721 other upstream 451801 19588034 ~ 19636446 (-)
G112280 NA other upstream 596371 19732604 ~ 19733373 (-)
zglp1 NA other upstream 698175 19834408 ~ 19842292 (-)

Expression


Co-expression Network