G3631


Basic Information

Item Value
gene id G3631
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035897.1
NCBI id CM008300.1
chromosome length 26953843
location 14474085 ~ 14475176 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU4840
gtttggactggggtaaggaacgggaccgcactattcagcgctgctgttttaataaatatataagtaaatttgaagcattaaatgtagtttatttaatttatattaggaacgtggggcgggagcggcagaaatgtgtatgtggcgggcgggcgcgggattaaaagaagccatttttttgcggagcggtaacgagacagaaacgcgggagcgtggaagagtgggtttaaaaatcagtctcgcgcagacctctattatacatgataaaaaaaatgcaggctcttcgaaactgatttatataataaaacgtaaggggtaatgtggcaacagtaggggctaaatcggttacaaaagcctggcctacaaaaatgatgtctgaacgaatttcctcttatctaatataatttaaaatggtttaaaaatataaaataatttctaagcaaacgaaatatttaatattgagcttatagcccaagtgcaaaaatacaaaatcagtaatacggctatgccctgcacaatccttaaaccgaaatagaccaagtacaataacgtcattaacaatgactttcctctactctaatataatttaacatggtttaaaaatataaaataatttctaaacaaacgaaatatttaatattgagcttatagcccaagtgcaaaaatacaaaatcagtaatatgccctgcacaatcctttaaccgaaatagaccaagtacagtttacaatgactgtcctctaatataattaacaatgtttaagaatataaaatacttcctgaacaaacgttttttttgtttgttttttttaagcaaatagcctaagtgtgaaaacacaaacagcaatttactgggctggcttgcgcagcggagaaaccgtgcagcagcaggtgaaaacacaaagaaatctgggctaaaaacacagaaaaaatatggggtgaaaacacaaaaatccgggataaaaacaccaaaaatccggggtgaatatgtctcgtcggtcagagcaaattgaacatttttcagtggattaaaggggccgtgatttgctttttttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU4840 True 1052 lncRNA 0.40 2 14474085 14475176

Neighbor

gene id symbol gene type direction distance location
blmh blmh,LOC107743628 coding downstream 38703 14414254 ~ 14435382 (-)
LOC103037230 ssh2,LOC108440358 coding downstream 109616 14331805 ~ 14364469 (-)
git1 git1,LOC107685085,LOC107669736,LOC107548582,LOC105889552,LOC106580798 coding downstream 194795 14255315 ~ 14279290 (-)
LOC103035060 LOC108440363 coding downstream 305147 14138449 ~ 14168938 (-)
LOC103025751 LOC108427003,LOC107730853,LOC107582235,LOC107683286,LOC108277959 coding downstream 723806 13734473 ~ 13750279 (-)
LOC103039849 cd3eap coding upstream 42759 14517935 ~ 14520858 (-)
LOC103040167 gpr4,LOC108278409,LOC107743733,LOC107669721,LOC107548551 coding upstream 65231 14540407 ~ 14577509 (-)
LOC103040481 eml2,LOC108277999,LOC107685092,LOC107669753 coding upstream 117849 14593025 ~ 14630713 (-)
LOC103041915 NA coding upstream 237142 14712318 ~ 14720394 (-)
LOC111192841 NA coding upstream 278734 14753910 ~ 14755778 (-)
LOC107197060 NA non-coding downstream 103001 14369213 ~ 14371084 (-)
G3621 NA non-coding downstream 111013 14362000 ~ 14363072 (-)
LOC111190296 NA non-coding downstream 155188 14281032 ~ 14318897 (-)
G3610 NA non-coding downstream 226226 14247642 ~ 14247859 (-)
G3474 NA non-coding downstream 782203 13689761 ~ 13691882 (-)
G3668 NA non-coding upstream 58567 14533743 ~ 14790620 (-)
G3697 NA non-coding upstream 261654 14736830 ~ 14737158 (-)
G3699 NA non-coding upstream 274942 14750118 ~ 14753636 (-)
G3717 NA non-coding upstream 339244 14814420 ~ 14814633 (-)
G3745 LOC108425806,LOC107700232,LOC107548486,LOC107655908 non-coding upstream 365103 14840279 ~ 14845627 (-)
slc6a4 slc6a4,slc6a4a,LOC107743629,LOC107669739,LOC107548586,LOC107756784,LOC107589714,LOC107685089 other downstream 2333 14380755 ~ 14471752 (-)
G3612 NA other downstream 189860 14283623 ~ 14284225 (-)
LOC111189390 NA other downstream 340848 14124173 ~ 14133237 (-)
slc43a2 slc43a2,LOC107685082,LOC107548581,LOC107589710 other downstream 901713 13544500 ~ 13572372 (-)
LOC111197384 NA other downstream 1338444 13130212 ~ 13135641 (-)
LOC103022652 LOC103022652,LOC108425821,LOC108277503 other upstream 1802829 16278005 ~ 16282632 (-)
ercc2 ercc2,LOC107743694,LOC107601732 other upstream 2169316 16644492 ~ 16653968 (-)
LOC103040336 mpzl2 other upstream 3508709 17983885 ~ 17998749 (-)
G4621 NA other upstream 3555186 18030362 ~ 18040766 (-)
LOC103031959 NA other upstream 3721404 18196580 ~ 18226004 (-)

Expression


Co-expression Network