G96407 (H3F3A,h3f3b,LOC105909691,LOC107388308,LOC101073377,LOC107572204,LOC103395674,LOC101167724)


Basic Information

Item Value
gene id G96407
gene name H3F3A,h3f3b,LOC105909691,LOC107388308,LOC101073377,LOC107572204,LOC103395674,LOC101167724
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1434255 ~ 1486728 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU129844
ATGAGGTAGTGGAAAGTTTATTTACAACCAAATGGCCACAATGGAGGAGAAAAATAGAATGATAGAAATAAAATGGACATGTCCTAATATCACCATGTAGCATGCAGACTATAGCACACAGGCAGAGGTATACCAAAGTCTAAAATACAAACTTTAAAACCCTGAGAGGAGCTCCCGGAATGTTCAGACACCACCCCCTACTGTCACGCTGAAGAACCACAAGATTCCCCTCCCCTGCCAcaactaccaaaaaaaaaattacaaaaaaaaaagtaagcttAAAACTACAACAAGCATTTGTAGTTGAAtaagaaccccccccccccctaaacacctgctccccccaccccccttcaAAAAAGGTGGATTAAATAGAATGAGCCATCTAAGCACGCTCGCCGCGGATCCGCCGAGCCAGCTGGATGTCCTTGGGCATGATGGTGACACGTTTTGCGTGGATGGCGCACAGGTTAGTGTCCTCAAAGAGACCCACCAGGTATGCCTCACTAGCTTCCTGCAGAGCTCCAATAGCAGCACTCTGGAAGCGGAGATCCGTCTTGAAGTCCTGAGCAATCTCCCTCACCAGGCGCTGGAAGGGTAACTTGCGGATCAGAAGCTCAGTGGACTTCTGGTACCGACGAATCTCACGAAGAGCCACAGTACCAGgactaaaagacaaaaaaaaattaacaagttTAGCAACAAACATTAAACGTACAGccatgagtaaaaaaaaaaaaaaaaacggttctCACCGGTATCTATGGGGCTTCTTCACTCCGCCAGTGGAGGGCGCGCTTTTGCGGGCAGCTTTAGTGGCCAACTGCTTCCTGGGGGCTTTGCCTCCAGTGGATTTACGCGCAGTCTGCTTGGTACGAGCCATCGCACTCGAGTAGTCCTCTTacctacacaaaataaaatggtCTGTTTCGTTTCGATTACTCCGAACACCCAAAACAACGACCGT
>TU129846
ATGAGGTAGTGGAAAGTTTATTTACAACCAAATGGCCACAATGGAGGAGAAAAATAGAATGATAGAAATAAAATGGACATGTCCTAATATCACCATGTAGCATGCAGACTATAGCACACAGGCAGAGGTATACCAAAGTCTAAAATACAAACTTTAAAACCCTGAGAGGAGCTCCCGGAATGTTCAGACACCACCCCCTACTGTCACGCTGAAGAACCACAAGATTCCCCTCCCCTGCCAcaactaccaaaaaaaaaattacaaaaaaaaaagtaagcttAAAACTACAACAAGCATTTGTAGTTGAAtaagaaccccccccccccctaaacacctgctccccccaccccccttcaAAAAAGGTGGATTAAATAGAATGAGCCATCTAAGCACGCTCGCCGCGGATCCGCCGAGCCAGCTGGATGTCCTTGGGCATGATGGTGACACGTTTTGCGTGGATGGCGCACAGGTTAGTGTCCTCAAAGAGACCCACCAGGTATGCCTCACTAGCTTCCTGCAGAGCTCCAATAGCAGCACTCTGGAAGCGGAGATCCGTCTTGAAGTCCTGAGCAATCTCCCTCACCAGGCGCTGGAAGGGTAACTTGCGGATCAGAAGCTCAGTGGACTTCTGGTACCGACGAATCTCACGAAGAGCCACAGTACCAGgaCGGTATCTATGGGGCTTCTTCACTCCGCCAGTGGAGGGCGCGCTTTTGCGGGCAGCTTTAGTGGCCAACTGCTTCCTGGGGGCTTTGCCTCCAGTGGATTTACGCGCAGTCTGCTTGGTACGAGCCATCGCACTCGAGTAGTCCTCTTacCTGTTTCGTTTCGATTACTCCGAACACCCAAAACAACGACCGT
>TU129848
ATGAGGTAGTGGAAAGTTTATTTACAACCAAATGGCCACAATGGAGGAGAAAAATAGAATGATAGAAATAAAATGGACATGTCCTAATATCACCATGTAGCATGCAGACTATAGCACACAGGCAGAGGTATACCAAAGTCTAAAATACAAACTTTAAAACCCTGAGAGGAGCTCCCGGAATGTTCAGACACCACCCCCTACTGTCACGCTGAAGAACCACAAGATTCCCCTCCCCTGCCAcaactaccaaaaaaaaaattacaaaaaaaaaagtaagcttAAAACTACAACAAGCATTTGTAGTTGAAtaagaaccccccccccccctaaacacctgctccccccaccccccttcaAAAAAGGTGGATTAAATAGAATGAGCCATCTAAGCACGCTCGCCGCGGATCCGCCGAGCCAGCTGGATGTCCTTGGGCATGATGGTGACACGTTTTGCGTGGATGGCGCACAGGTTAGTGTCCTCAAAGAGACCCACCAGGTATGCCTCACTAGCTTCCTGCAGAGCTCCAATAGCAGCACTCTGGAAGCGGAGATCCGTCTTGAAGTCCTGAGCAATCTCCCTCACCAGGCGCTGGAAGGGTAACTTGCGGATCAGAAGCTCAGTGGACTTCTGGTACCGACGAATCTCACGAAGAGCCACAGTACCAGgactaaaagacaaaaaaaaattaacaagttTAGCAACAAACATTAAACGTACAGccatgagtaaaaaaaaaaaaaaaaacggttctCACCGGTATCTATGGGGCTTCTTCACTCCGCCAGTGGAGGGCGCGCTTTTGCGGGCAGCTTTAGTGGCCAACTGCTTCCTGGGGGCTTTGCCTCCAGTGGATTTACGCGCAGTCTGCTTGGTACGAGCCATCGCACTCGAGTAGTCCTCTTacctacacaaaataaaatggtCAGAGCAAGTAAAGCAATGATAATGTGACTCAATGTGTTACATAACCCATATCCTGTAGTAAAGAGCCCAAACTACTGCTGTTTTGCTATTAAGCGCGGGACACATTTCCAACACTGGCTCCCTCCCCCTAAACAGCACAAAAgactagttaggttagctagcacTAGCTGTACAAGTTCCTTTGGGCCTGTCCGTCTACAATTTTATTTCTACAGTAATATTCATGCCATTTACAACAAATTCTGACTAAAACTTATTGAAATAAATCACTTAATTAAAATTATCTAAAAAGTTGATTATCCTTGTAGCCTTCAGAAAAATAATCTATACTTTTTTTTGGGGTACTTAAGTACTGTCTTTCAGAACATACTAtattaattatctttttttgcCGTACGGGTAAACACGAAGACATGCAGACACATCtgactatataaatacatttgttgtgttttttgtaactTACATCTGTGAAACTCGTATCAACATGTTCCGTTTTAAAGTCTGATTTTCACACGTACACTTATTATATCCGATAATTACACAAGCTATTCCCAGTCTGTCCACTAGGAGGCGCGTTTGGTATAAAAGCATTCACAGCGAATCACCATAAAGCTGCGGCTGAAACCGCCATTAAAAACAGAACGTCTAGCTCACATTCACACGCCATCTAACGCAAAAATTACCTTTGCTGTGCCTATTTATTACATTGAATCTGAGAACTATTGAGTAGTGTTGCCAAATGCCactaatacagccaaattaacgCTACCTAGCAAGCGTAAGTTAATGAAGAGTGGTCTtcactagctaactagttagctttgGCTCTCCAGCTCTGCGCTAACGTTACACTgaaggggagggggggtgtATTTTTGAGCGCGTTAGCTTAAAGCTAGCCaagcttaaaaataaataaactaaccgTCACAAAACCAACAAAACGAACACACATCagtaatgactttttttttttaaacacgaCTAACTTGTTCGGACTATAAACAAAACGATACTAAAactcaatatataaataatttttagcTCGCCCTCCATTACACGACGTTCAGCTCACACGTTTCTCCTTCACTTGTAAGCCAACATGGCGTCCCCTCACAACAATTACTGCCTCCTCTTTGTTTAGcccaaaaacggagaaaaacaCACCGGTGAACACGCTCTCTATCAATGAGCGAACTTCTTAGAAATAGAGACAAACGACCCTCTAAAGCAGACTAACATACCCACAAAACACGTCGAATTACAATTAATCCATTAATACTGAAACGGATTTTAAACGGCGGCTTGTTGCTAAGAGGTTACCGCGCCacagcggagcggagcggagcagCCCTCAGCCAACCGCCGCTTCTCGCCTCTCCGCGGAGGAGGACAGGATACAAGTTAAAGTAAAGCCTCATTCTGAACCCAAAACAAGCCAAACAAACAGCCTAAGAGGCACACAGGCCTCCGACTCCTAAGTCTccacaaacacattaaaaaatagcCATTAACTTACCTGTTTCGTTTCGATTACTCCGAACACCCAAAACAACGACCGT
>TU129849
ATGAGGTAGTGGAAAGTTTATTTACAACCAAATGGCCACAATGGAGGAGAAAAATAGAATGATAGAAATAAAATGGACATGTCCTAATATCACCATGTAGCATGCAGACTATAGCACACAGGCAGAGGTATACCAAAGTCTAAAATACAAACTTTAAAACCCTGAGAGGAGCTCCCGGAATGTTCAGACACCACCCCCTACTGTCACGCTGAAGAACCACAAGATTCCCCTCCCCTGCCAcaactaccaaaaaaaaaattacaaaaaaaaaaAAGCTTAAAA
>TU129850
CCCAACCCATTCATATAGAAACACTAGccattctgattttttttttatgcacctCTAGTGGCAAATTTAGGTTGCATTGAATCTGTTGGCTCTTTTAGCTTAAGCCCTGTTAGCACAACGGGCACACAAAAATTTAATTAGTAACTGACCCCTTTTTCCACTGATTTCATAACATTTTGGGCCAATGTTGTGCATGGttattaaaatcagctgaacTTAATGTTAAGTATATGTTTGCAGCAGTTCTCTTCACTCTCCACATTAACCACACAGAATCCAGCACATGAGGTAGTGGAAAGTTTATTTACAACCAAATGGCCACAATGGAGGAGAAAAATAGAATGATAGAAATAAAATGGACATGTCCTAATATCACCATGTAGCATGCAGACTATAGCACACAGGCAGAGGTATACCAAAGTCTAAAATACAAACTTTAAAACCCTGAGAGGAGCTCCCGGAATGTTCAGACACCACCCCCTACTGTCACGCTGAAGAACCACAAGATTCCCCTCCCCTGCCAcaactaccaaaaaaaaaattacaaaaaaaaaataagtaagctt

Function

symbol description
h3f3a Part of nucleosome. Is expressed in pharyngeal arch. Orthologous to human H3-3A (H3.3 histone A).
h3f3b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Involved in brain development and response to hormone. Predicted to be located in chromosome, telomeric region and nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H3-3B (H3.3 histone B).

NR:

description
PREDICTED: histone H3-like centromeric protein CSE4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129844 False 967 lncRNA 0.47 3 1482744 1486445
TU129846 False 861 lncRNA 0.50 4 1482744 1486445
TU129848 True 2490 lncRNA 0.43 2 1482744 1486445
TU129849 False 282 lncRNA 0.39 2 1450513 1486445
TU129850 False 566 lncRNA 0.39 2 1434255 1486728

Neighbor

gene id symbol gene type direction distance location
LOC103026561 LOC103026561,LOC108429165,LOC107554213,LOC107747860,LOC107667231,LOC107677303,LOC107556681,LOC107717783 coding downstream 123115 1309543 ~ 1311140 (-)
cluap1 cluap1,LOC107667210,LOC107718203,LOC107747891 coding downstream 211190 1209508 ~ 1223065 (-)
LOC103030489 kcnc3b,LOC103030489,LOC108429201,LOC107667167,LOC103358372 coding downstream 464609 878894 ~ 969646 (-)
il4r NA coding downstream 606392 812108 ~ 827863 (-)
gnptg gnptg coding downstream 690525 736736 ~ 743730 (-)
c11h16orf91 NA coding upstream 611 1487339 ~ 1490240 (-)
LOC103030072 NA coding upstream 15075 1501803 ~ 1505396 (-)
scgn scgn,LOC105899305,LOC107663245,LOC106572986,LOC107747999 coding upstream 54542 1541270 ~ 1574346 (-)
tnfrsf11b tnfrsf11b coding upstream 335076 1821804 ~ 1839064 (-)
enpp2 enpp2,LOC107745056 coding upstream 474006 1960734 ~ 1989043 (-)
G96358 rhot2 non-coding downstream 142730 1288043 ~ 1291525 (-)
G96355 NA non-coding downstream 152262 1277743 ~ 1281993 (-)
G96257 wdr90,LOC107747862,LOC107554221 non-coding downstream 207405 1224164 ~ 1226850 (-)
G96213 NA non-coding downstream 598138 835528 ~ 836117 (-)
G96205 ube2i,LOC107677193 non-coding downstream 625730 755884 ~ 808525 (-)
G96446 NA non-coding upstream 299547 1786275 ~ 1786560 (-)
G96548 NA non-coding upstream 536615 2023343 ~ 2085429 (-)
G96556 prpf3,LOC107677690,LOC107719195 non-coding upstream 629872 2116600 ~ 2121696 (-)
G96665 LOC106588695 non-coding upstream 665238 2151966 ~ 2227497 (-)
G96706 NA non-coding upstream 1008896 2495624 ~ 2495978 (-)
LOC103043490 NA other downstream 1168661 252340 ~ 265594 (-)
carmil1 carmil1 other upstream 95279 1582007 ~ 1778100 (-)
LOC103031019 NA other upstream 324973 1811701 ~ 1815034 (-)
mboat1 mboat1 other upstream 2391968 3878696 ~ 3899248 (-)
LOC107197182 NA other upstream 2663275 4150003 ~ 4178426 (-)
dek dek other upstream 2957501 4444229 ~ 4453002 (-)

Expression


Co-expression Network