tnfrsf11b (tnfrsf11b)


Basic Information

Item Value
gene id tnfrsf11b
gene name tnfrsf11b
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1821804 ~ 1839064 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256829.2
CCAGCGCAGAGGGCGGGACGTGTCGGAATACAGGTGGGAAAATGAGTGCAGCCTTGTCATCATTTACTATAAAAGTAATGGACCCGGACGAGTTGCTTCACACTTATCCGAGGAAATATGCCGCTGCGGACAGCGATGAAATTACACATGcttTTCGTCATGTCTTTCGCATTGGCCCACCATGAGACACCCAAGTACCAGCACCGTGACCCTATCACCAACAAGATGCTTCTGTGTGACCAGTGCCCACCAGGCACAGCTTTGGAACGACACTGCACTCCCAGTGAGGAAACCGTCTGCACCCCTTGCCCTGAGAGCCGCTTCGCAGAGCATTGGCACTGGGGAGACAGCTGCCAGTACTGCACGTCAGTCTGCAAGGAGAGACAGATTGTCCAGAGGGAATGCAACAGTACACACGACCGTATTTGTGAATGCATCGATGGTTACCATCTGGTGGTGGAATTCTGCGTCCAGCATACAGCCTGTCCGCCAGGGTCAGGTGCCTCTGTGCTGGGCACACCTGAAAGTGACACAGTGTGCGAGAAGTGTCCCCAGGGCTTTTTCTCCAGCGTAGCCTCAGCCACAGAGCCCTGTCTGCCCCACCGGGACTGCTCTCGACTGGGCCTGAAGACCCTGAGGCCAGGCACAGCCACCCAGGATACGGTCTGCGAGAGCGACCATACTTTTGACTGCTCAGATCAGCACACTGACTGCCATAACGacatcaccctttgtgaGGAGGTCATATTCCAGTTCCTGTCATCTCCGACACTTGCCTCTGTATCTGTGGAGCGTTTGCTGGAGAGCCTGCCCGGGCGACGGGTGGACTGGAAGAGTGTGGAGCACCTGAAGAAGACCTGCAGCCCGCAGCAGCAGGCCCTGTATCTGCTGCGTCTCTGGAGGGAGCAGAACAGAGACCAAGACAAGCTGCATATCATCATACAAGGTGTGAATCACTGCGAGAGAAAGGTGTCTCGCTGCACTGGCCTGAAGAACATGACACTGGGACACCTGCTGATGCTCGTGGACACCCTACCtggagagaaagtgagtgaagAAGCCGTGCGGGCGCTGGCTCTCTCGTGCCCTTCGCACCGCTACATTGTGCAGCTTCTCCACCTGTGGAAGAGCCAGAACAGTGGCCAGGACCTGGCCAAGGCTCTGTCCCACAGCCTGCGCAAGCTACGCTCGCGAGGAGCCCCGCAGGCCATGCTGCGGACTCTGAAACAGGTCGTCCGCATCATTAACGCCTCCCCTGTACACCGCGTGTATGAAAAAATGATCGTTAAATTGCTTCAGGACAGCTCGTGCTTTAAATCCAAACTCTACAATGACTGAACTCCTGGAGGCCAATGGAGGATGGCTGAAGAGAAGAATTATTTAATTGCAAATTGAAAAGAGTTGTATATACTTTCACTTTTGTGTGAGAACTGGGACTGAAGGGGTGGGTGGGGTGTAATGCtttcagcagaagaagaaaatatttttgtgGCCTGTTTTTCTCGTCTTGTGTTGGACGGCTTTTACCGAAGCTCTAAAGAAAAAGAATGTCAGATATGAATGTACAGTATAAGAGTgcaattatgttttatttaattttaatggtGTGTTTCCAAATTTGCTttaaattttgctatttatcacTATGTCTAAAAACTGGACACTGAAGCTATGTTTCATATTTGAAAGCAAGCTGTATTAGtaggtttgattttattttattttcgtggcatttttgtttttgtttcacatTAATGGTTTTCTTCATAATAACATGACATTGACAATCGAGAAAAATGTTATCTTAGACATACACGTGTATGTCAACATACAAGTACATACTTCTGCAGCCTAACttaaatatacagtttatattaaTGCTGACTTCATGTTTCAAGCTTCATTGCATGTTAGGCTTTTGCATACTGTTTCGTTTTCTTTAGGGACGTGTCTTTATGAAACTTCTATTTTTGCATCTGTTAGTGCTTATATATGTACAGTGGCATGCAAGTTTGTGTTCCTGTAAGCAGCTAATCAAGTAAAAGATAAACCAAGTTCCAAATTATAATAATCGCATTTCAAACAGCCAAAAATACAATCTTCATTGGAGATCCAGATTTTGGTGGTATTTAATTGAATCTATTCTTCCCCATGCCACTGACTGCAATACAAGCCCAAAGCATGATCAGTTCTCCTTCATGCTttacagttcttttttttttgttacattttgcaCCCTTTTCCCAAACAGACCTTTGGTTATTTGGTATATAACTAAAACATTCTATTTTACCTGTAACAATTAGTGATGCACTGATGTGTGAAATTTTTTTCATGCTGCTTTGAGGTAAGGATGCAGGAAAgagtattttataaattctgatctacaatttgatttttaaaaattgtattacGTGGTCCTACGTAATGATAACCATGTCATTGGCCTACACAAGCTAATTAATATCtaccttggaaaaaaaaaacattgtatttagatttttctaGGTGCCTAAACTTTGCAggtttctcttttatttttttttccattttaaaatacatttaaatatacaaaaccAGAAGATTACAGTAGTCttacttaaaatgttaaaaagaatccttaatcttttttttttttagtttggaattcttctacactttttttttctttttcacagtAACACATTTTGCATGCCACTGCTTtcataaaaatcacattttacagtCCTTAAACTGCACCTTGTTCAAATAGCTTAAGCTTACTGTTTTTTAGAGTTTGTCTGTATGCTACTGTTACTGGCCTGCTGTTATTACAATGAGCTGTATTAAATTTTCTTTTAGATTTTTACTA
>XM_022674096.1
CCAGCGCAGAGGGCGGGACGTGTCGGAATACAGGTGGGAAAATGAGTGCAGCCTTGTCATCATTTACTATAAAAGTAATGGACCCGGACGAGTTGCTTCACACTTATCCGAGGAAATATGCCGCTGCGGACAGCGATGAAATTACACATGcagcacGTGGAGACCGGTGGAGAACGGGCCATTAACTGTCACAGACCGATTAACGGTTTAACTGAACCCATCACCTGAATAAACCCTGCGAGACTTTACAGGTTTTTACAGcttTTCGTCATGTCTTTCGCATTGGCCCACCATGAGACACCCAAGTACCAGCACCGTGACCCTATCACCAACAAGATGCTTCTGTGTGACCAGTGCCCACCAGGCACAGCTTTGGAACGACACTGCACTCCCAGTGAGGAAACCGTCTGCACCCCTTGCCCTGAGAGCCGCTTCGCAGAGCATTGGCACTGGGGAGACAGCTGCCAGTACTGCACGTCAGTCTGCAAGGAGAGACAGATTGTCCAGAGGGAATGCAACAGTACACACGACCGTATTTGTGAATGCATCGATGGTTACCATCTGGTGGTGGAATTCTGCGTCCAGCATACAGCCTGTCCGCCAGGGTCAGGTGCCTCTGTGCTGGGCACACCTGAAAGTGACACAGTGTGCGAGAAGTGTCCCCAGGGCTTTTTCTCCAGCGTAGCCTCAGCCACAGAGCCCTGTCTGCCCCACCGGGACTGCTCTCGACTGGGCCTGAAGACCCTGAGGCCAGGCACAGCCACCCAGGATACGGTCTGCGAGAGCGACCATACTTTTGACTGCTCAGATCAGCACACTGACTGCCATAACGacatcaccctttgtgaGGAGGTCATATTCCAGTTCCTGTCATCTCCGACACTTGCCTCTGTATCTGTGGAGCGTTTGCTGGAGAGCCTGCCCGGGCGACGGGTGGACTGGAAGAGTGTGGAGCACCTGAAGAAGACCTGCAGCCCGCAGCAGCAGGCCCTGTATCTGCTGCGTCTCTGGAGGGAGCAGAACAGAGACCAAGACAAGCTGCATATCATCATACAAGGTGTGAATCACTGCGAGAGAAAGGTGTCTCGCTGCACTGGCCTGAAGAACATGACACTGGGACACCTGCTGATGCTCGTGGACACCCTACCtggagagaaagtgagtgaagAAGCCGTGCGGGCGCTGGCTCTCTCGTGCCCTTCGCACCGCTACATTGTGCAGCTTCTCCACCTGTGGAAGAGCCAGAACAGTGGCCAGGACCTGGCCAAGGCTCTGTCCCACAGCCTGCGCAAGCTACGCTCGCGAGGAGCCCCGCAGGCCATGCTGCGGACTCTGAAACAGGTCGTCCGCATCATTAACGCCTCCCCTGTACACCGCGTGTATGAAAAAATGATCGTTAAATTGCTTCAGGACAGCTCGTGCTTTAAATCCAAACTCTACAATGACTGAACTCCTGGAGGCCAATGGAGGATGGCTGAAGAGAAGAATTATTTAATTGCAAATTGAAAAGAGTTGTATATACTTTCACTTTTGTGTGAGAACTGGGACTGAAGGGGTGGGTGGGGTGTAATGCtttcagcagaagaagaaaatatttttgtgGCCTGTTTTTCTCGTCTTGTGTTGGACGGCTTTTACCGAAGCTCTAAAGAAAAAGAATGTCAGATATGAATGTACAGTATAAGAGTgcaattatgttttatttaattttaatggtGTGTTTCCAAATTTGCTttaaattttgctatttatcacTATGTCTAAAAACTGGACACTGAAGCTATGTTTCATATTTGAAAGCAAGCTGTATTAGtaggtttgattttattttattttcgtggcatttttgtttttgtttcacatTAATGGTTTTCTTCATAATAACATGACATTGACAATCGAGAAAAATGTTATCTTAGACATACACGTGTATGTCAACATACAAGTACATACTTCTGCAGCCTAACttaaatatacagtttatattaaTGCTGACTTCATGTTTCAAGCTTCATTGCATGTTAGGCTTTTGCATACTGTTTCGTTTTCTTTAGGGACGTGTCTTTATGAAACTTCTATTTTTGCATCTGTTAGTGCTTATATATGTACAGTGGCATGCAAGTTTGTGTTCCTGTAAGCAGCTAATCAAGTAAAAGATAAACCAAGTTCCAAATTATAATAATCGCATTTCAAACAGCCAAAAATACAATCTTCATTGGAGATCCAGATTTTGGTGGTATTTAATTGAATCTATTCTTCCCCATGCCACTGACTGCAATACAAGCCCAAAGCATGATCAGTTCTCCTTCATGCTttacagttcttttttttttgttacattttgcaCCCTTTTCCCAAACAGACCTTTGGTTATTTGGTATATAACTAAAACATTCTATTTTACCTGTAACAATTAGTGATGCACTGATGTGTGAAATTTTTTTCATGCTGCTTTGAGGTAAGGATGCAGGAAAgagtattttataaattctgatctacaatttgatttttaaaaattgtattacGTGGTCCTACGTAATGATAACCATGTCATTGGCCTACACAAGCTAATTAATATCtaccttggaaaaaaaaaacattgtatttagatttttctaGGTGCCTAAACTTTGCAggtttctcttttatttttttttccattttaaaatacatttaaatatacaaaaccAGAAGATTACAGTAGTCttacttaaaatgttaaaaagaatccttaatcttttttttttttagtttggaattcttctacactttttttttctttttcacagtAACACATTTTGCATGCCACTGCTTtcataaaaatcacattttacagtCCTTAAACTGCACCTTGTTCAAATAGCTTAAGCTTACTGTTTTTTAGAGTTTGTCTGTATGCTACTGTTACTGGCCTGCTGTTATTACAATGAGCTGTATTAAATTTTCTTTTAGATTTTTACTA

Function

symbol description
tnfrsf11b Acts upstream of or within response to mechanical stimulus. Is expressed in head and scale. Human ortholog(s) of this gene implicated in Paget's disease of bone and osteoarthritis. Orthologous to human TNFRSF11B (TNF receptor superfamily member 11b).

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member 11B isoform X1

GO: NA

KEGG:

id description
K05148 TNFRSF11B, OPG; tumor necrosis factor receptor superfamily member 11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256829.2 False 2851 mRNA 0.43 5 1821804 1839064
XM_022674096.1 True 2962 mRNA 0.43 6 1821804 1839064

Neighbor

gene id symbol gene type direction distance location
scgn scgn,LOC105899305,LOC107663245,LOC106572986,LOC107747999 coding downstream 247458 1541270 ~ 1574346 (-)
LOC103030072 NA coding downstream 316408 1501803 ~ 1505396 (-)
c11h16orf91 NA coding downstream 331564 1487339 ~ 1490240 (-)
c11h8orf33 LOC103028915 coding downstream 340051 1478526 ~ 1481753 (-)
anks3 anks3,LOC107747856,LOC107717876 coding downstream 344785 1458450 ~ 1477019 (-)
enpp2 enpp2,LOC107745056 coding upstream 121670 1960734 ~ 1989043 (-)
taf2 taf2 coding upstream 155012 1994076 ~ 2028742 (-)
ca14 ca14 coding upstream 190674 2029738 ~ 2063373 (-)
LOC111193410 NA coding upstream 431439 2270503 ~ 2271577 (-)
LOC111193409 NA coding upstream 458196 2297260 ~ 2299513 (-)
G96446 NA non-coding downstream 35244 1786275 ~ 1786560 (-)
G96407 H3F3A,h3f3b,LOC105909691,LOC107388308,LOC101073377,LOC107572204,LOC103395674,LOC101167724 non-coding downstream 335076 1434255 ~ 1486728 (-)
G96383 NA non-coding downstream 364948 1454970 ~ 1456856 (-)
G96358 rhot2 non-coding downstream 530279 1288043 ~ 1291525 (-)
G96355 NA non-coding downstream 539811 1277743 ~ 1281993 (-)
G96548 NA non-coding upstream 184279 2023343 ~ 2085429 (-)
G96556 prpf3,LOC107677690,LOC107719195 non-coding upstream 277536 2116600 ~ 2121696 (-)
G96665 LOC106588695 non-coding upstream 312902 2151966 ~ 2227497 (-)
G96706 NA non-coding upstream 656560 2495624 ~ 2495978 (-)
G96754 NA non-coding upstream 1228434 3067498 ~ 3086140 (-)
LOC103031019 NA other downstream 6770 1811701 ~ 1815034 (-)
carmil1 carmil1 other downstream 43704 1582007 ~ 1778100 (-)
LOC103043490 NA other downstream 1556210 252340 ~ 265594 (-)
mboat1 mboat1 other upstream 2039632 3878696 ~ 3899248 (-)
LOC107197182 NA other upstream 2310939 4150003 ~ 4178426 (-)
dek dek other upstream 2605165 4444229 ~ 4453002 (-)
LOC103028279 NA other upstream 3701849 5540913 ~ 5573904 (-)
G97717 NA other upstream 3739498 5578562 ~ 5586666 (-)

Expression


Co-expression Network