LOC103030072


Basic Information

Item Value
gene id LOC103030072
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 1501803 ~ 1505396 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007256825.2
tttcataaaaaaattgctacaaatctatttttaaaaatgggcCACTTGGCTAAGGTTAGCCCAACCCTTATAtaagaccacacacacacacacacacacacatatatatatataaaacatggaATAAACGCTTCTAAGAACTTGTGCATTCAACCATCCGATTACCACTCACACtaccctaaacacacacacacacatgccgtTCTTGAACTCTGTGTATTGGTCAgcccatctgtctgtctgtcacttGCAACCTATTGAATTTGTCCAACATTTTGTTTAGTGTAAACAGTGTGGGCGATTGTATGAGTCTGACCGGTCCTCcagtatttacacatttacaaaagACACTCAGTATCCATTAACCTAGCAGataaaagagatacagagatacagagaaagagagagagaaagagagagagagagagaaagtgcatAAGATTAGACGCAGTGAGATTCTATTTTCACACAGCATGCAGGATTGGAAGAACTGCACACGGAAAGAGCCAAAGGAGAAATAGAGCCCTTTTCATTGCTATGATGCTCTGGAACTGATCTGCTAAACGTGCAAGAAGATAGAAGATGGACGGGCCCTTAACCTTTACAAACAATATATCCTTCCTCTCCTGGCCTGTGATTGGTGATAATCAAACTGAAACAGATTTTTACGCTGTCAACCTTCTCCTATCTTGCTTCTACACTGTGTTCCTATTTCCGCTTGGCCTTGTGGGTAATGTCCTGATCCTTTTGGTGAACTTGGACCCCTGCCAGCGAAGGAGCAACCCAGACCTGTACTTCACCAACCTTGCCCTGGCTGacctggtgctggtgctggacTCGCTGATAGAAGTGTTCAACCTGAGTGGACATTACTATGATGATGCTGTGCTGTGCACTTGCATGGCGCTCTTCCTGCAGATCAACATGTACAGCAGTGTCTTCTCCCTCACCTGGATGAGTCTGGACCGCTGTGTGGCTCTAACCGGCCTGTCGTCTCGTTCTCTAGCTGCCACCCACAACTCGCTAAGTCACCATTCCAGCCTCATGTGCACTGTCATCTGGGTGGCGGCCATTGCCTGCACACTGCTGCCATTCGCCACAGCTCATGCCCAACACGGCTGGGGGCGGGGCTTCTGCTTTGCGGCCGCAGCTGAGGTCCAGTGGCTGGAGGTGACGCTGGGCTTTGCTGTACCTTTTTGCATCATGGGTGTTTGCTACGCCCTGATTGGCCATGCGCTGTTGCAGTCAGAGCGACCACGTCGGGCCAAGGCGCTTCGGATGATCGCGGCCGCAGTCGGCGTCTTCTTCGTCTGCTGGCTGCCTGAAAATGTCTTCATATGTGTTCACCTGCTGTGCGGGGCAACCGAACCATCACGGCGGCGAGGCAACAGCACACTATGGCAGCAGTACCCACTGACAGGTCACGTGGTCACGTtggctgcatgtgccaacagcTGTCTCAACCCGCTGGTCTACGGCCTGCTGGGAAAAACTTTCCGGCGCAAACTGAATCTCTTCCTGAAGCACCACCTACACTGCCTTGCTGCACCTCAACGAACCACAGACATGACTCATGTGCCCCTTCGTGGGTGCCTGAGAGAGCAGTTCAGACACAACACATGTGCTCACCAGGCTCAGAGAGAAAAGGAGTATGAGCCCAGAAGGGTCTGAGTAGAGTGTTACAGAAAGGGTAAATAAAACCTATGAGCAGTAACAGGGAAATGGACTAGTAGGCCCCTGAAGTCTGATACCTCTGAAAAAAGTAATGGCATTTTTTACAAATAGGAGGTTAAAACACAAAGGTTACTACATGTAAGTCAACACTGCTGTTAGCTTTAAGTGGACGTATGAAGTGTGGTATTTAAGCTGCTACTTAAGCTGCATAACATGTTAAACATGTTAGATACAGAGACAGACTGATAGAGAGACTGATAACATTAAAGGCCAATTCATACGTCTGCATCGAACCTACGCCGTAGCCTATGCATATCCAGCTTTTGCTTGCGCATATCAGTGGCTCTGTCTTGCTCTGCTGTTTAATAGGCCAAAATGTGTTGGATGTAACGCGTGGCTGGCGAACAAATCACAGCTGCGGCTGTCTGTCACACGTAGTAACATTTCCAGGGAGGTGCGCATCAAGCTATGGCACAGGGTATGCGTCAAGAAGAAGGCTATGGCTTAGGTGTGACGGAGACGTATAACcaggggttggttggttggttggatggatggatggaatattTAAACCTGTCATTATCTTGATTTTGAGATTATGCACCCTAAAGATGAATAAAGTTACTGCTAGTGAATATGAATAccagtttttgtcatattttgtcagtgtttgcC

Function

GO:

id name namespace
GO:1900194 negative regulation of oocyte maturation biological_process
GO:2000179 positive regulation of neural precursor cell proliferation biological_process
GO:0051447 negative regulation of meiotic cell cycle biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0071392 cellular response to estradiol stimulus biological_process
GO:0043950 positive regulation of cAMP-mediated signaling biological_process
GO:0040019 positive regulation of embryonic development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0007420 brain development biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0005768 endosome cellular_component
GO:0042995 cell projection cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0045202 synapse cellular_component
GO:0031090 organelle membrane cellular_component
GO:0005496 steroid binding molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007256825.2 True 2349 mRNA 0.48 2 1501803 1505396

Neighbor

gene id symbol gene type direction distance location
c11h16orf91 NA coding downstream 11563 1487339 ~ 1490240 (-)
c11h8orf33 LOC103028915 coding downstream 20050 1478526 ~ 1481753 (-)
anks3 anks3,LOC107747856,LOC107717876 coding downstream 24784 1458450 ~ 1477019 (-)
LOC103027648 LOC108429212 coding downstream 61975 1422779 ~ 1439828 (-)
LOC103026561 LOC103026561,LOC108429165,LOC107554213,LOC107747860,LOC107667231,LOC107677303,LOC107556681,LOC107717783 coding downstream 190663 1309543 ~ 1311140 (-)
scgn scgn,LOC105899305,LOC107663245,LOC106572986,LOC107747999 coding upstream 35874 1541270 ~ 1574346 (-)
tnfrsf11b tnfrsf11b coding upstream 316408 1821804 ~ 1839064 (-)
enpp2 enpp2,LOC107745056 coding upstream 455338 1960734 ~ 1989043 (-)
taf2 taf2 coding upstream 488680 1994076 ~ 2028742 (-)
ca14 ca14 coding upstream 524342 2029738 ~ 2063373 (-)
G96407 H3F3A,h3f3b,LOC105909691,LOC107388308,LOC101073377,LOC107572204,LOC103395674,LOC101167724 non-coding downstream 15075 1434255 ~ 1486728 (-)
G96383 NA non-coding downstream 44947 1454970 ~ 1456856 (-)
G96358 rhot2 non-coding downstream 210278 1288043 ~ 1291525 (-)
G96355 NA non-coding downstream 219810 1277743 ~ 1281993 (-)
G96257 wdr90,LOC107747862,LOC107554221 non-coding downstream 274953 1224164 ~ 1226850 (-)
G96446 NA non-coding upstream 280879 1786275 ~ 1786560 (-)
G96548 NA non-coding upstream 517947 2023343 ~ 2085429 (-)
G96556 prpf3,LOC107677690,LOC107719195 non-coding upstream 611204 2116600 ~ 2121696 (-)
G96665 LOC106588695 non-coding upstream 646570 2151966 ~ 2227497 (-)
G96706 NA non-coding upstream 990228 2495624 ~ 2495978 (-)
LOC103043490 NA other downstream 1236209 252340 ~ 265594 (-)
carmil1 carmil1 other upstream 76611 1582007 ~ 1778100 (-)
LOC103031019 NA other upstream 306305 1811701 ~ 1815034 (-)
mboat1 mboat1 other upstream 2373300 3878696 ~ 3899248 (-)
LOC107197182 NA other upstream 2644607 4150003 ~ 4178426 (-)
dek dek other upstream 2938833 4444229 ~ 4453002 (-)

Expression


Co-expression Network