G98782


Basic Information

Item Value
gene id G98782
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 9707666 ~ 9719982 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU133183
CTGactttatttacatttgaaaAAGAGGAAGACACTGACATAAAATGGCAGGAAAGAgaatgtaaaacacaaaaaaataagcatttacacacaaaaataaagtttgGGATGATTTGAGGCTTCCTGAGAGATAGAGATGAAGGTTTTATATACACATAGTGTTTGGTGGCGAGAGAGAAATCAGTCCTTTACTCCAGTTTTTGGTTCCTCAATGGTTCTCCTTGTTAAGAGAGAGTGCAAGCACTCTTCTGTCCATCTGACCAAACCTCTGCTTCTCTGGAGTGGAAACTTTCAGCTTCATCTGTGACTGATGGTCTCGGGGTGAATTAGCTTCCTTCAGGATCTGCAGAGGAGACCTGCCTTCAGATAGCAGAGCCTTGCtCTCTGCTTCTGTTTACCGAGAACAACCTTGTTCTCGTTCTCGTCCATGGGCGGTTTGCGGCTGGACAGCGGGGAGGAGGTTCCTTTCCCTCGGCTCTGAACCCCTCTAGCCCTGACGCCCGTCGCCCCAAACCCCACACCCAACCACTGGGGTTTAAACACCGCCTGGCTCGGGCTGCGGGGGTCAAACCGGGGGATCAGGATACCGCTTTCCCTCTGAACATTCAGGGTGCTGCTGGGTTTGCTGGAGGTTCTGACTGGTTCAGGATCCGCCAGCTTGGGCTGCTCTGCTTGTATCGGCACGTTTTCAGAAACAGGAGCAGGAGCTTCTGTTGCGGGTTCTCTTCTTCTATTGGCTGAACGACCTCTGGACTGGGCAGGATGGGCTCAGCAGAAACCTGAGGAAGAGCATAGGGGTGATCACTGTGCTCCTTCTCTTctgaaggaggaagaggagtaGCAGGGCGCTCCTCGGCTGAGGAGTAGAACTCTGGGGAGTAAACACCCTCTCTGCAGGCCAGCAGGCTCAGGCTGAGCTCCCTCCGGAGGGGAGATTCTCCCAGCAGCAGAGCCTCCTCAgcctcctccagagtgacctcCTCATCAGCGTCCACCTCCACCTGTGCCTCCCCGACCAGCACAAACGGACTGTTGCAGAAGGACCCGTACCCCACTGAGGGGCTGCAGGCCACGGGGCTGGACGGAGGGGCTGAGTGGTTGCTTTGGGGAGGGAGTAGGGGTTCTGTGGAGCTCAGCTCGTCCTGCTGCTCCACGGTGGACAGGCTGGGGTGTTTAGTGAAGGAGACGTGAGGGTGAAGAGCCGAGTCAGAGTCTGCCGTCTCGATGTCGCTCAGGAAGAACGTGCTGAGCTTGCGAGCCAACGAGCTGACAGTCACTTTCATACTGTCCTTCAGTGGGGTGCGAGCAACACCAGGCGTGGGCGACCGAGGGTCAAAACACACGGGCCCGACTGACTCCTGAACTTCGCCGACAGAAggggctgctgctgcacccCCCACCTGTATAGGTGTGCGGGAGATGCCACAGGACGGTGACCTGGGGTCAGCGAGCTCTGCCAGGCGTCGGTGATGAACTGCTTTCCCTGGTTCAAGCTTTGGTGTGGAAGCCACGGTCATCTTACTCTCACTAGATCCCATGATCAGCTTCTCTATTTACAACAGAGAGAAAACGATCCCTCGTCtCTGAAACCCAGCTATAGTCCTCCACAGCAGCCTCAGCACTCACTCCTCAAACAGTCCTTTCCTTAACCTGCTTTTATTACTCACAGCTCACTCTTTTAAATGAGTAAATCCAGTTTAATATTAAGTCGCTGTTGCTCTGgtagtctttctctctctctctctctcggactccctctcggtctttctctctctctctctgctccagGATGTGCCGGTATTTGGGGTTGTGCCTCAGCCAATCGCGGAGCGTCTCGCAGGCTTGCCGGTGCAGTGATTCGTTGGTGAAGCTGACGGCTAGAGCCATCAGTGCCGTCAGGTTGTCATTCTTCAGCTCGATAC
>TU133185
CTGactttatttacatttgaaaAAGAGGAAGACACTGACATAAAATGGCAGGAAAGAgaatgtaaaacacaaaaaaataagcatttacacacaaaaataaagtttgGGATGATTTGAGGCTTCCTGAGAGATAGAGATGAAGGTTTTATATACACATAGTGTTTGGTGGCGAGAGAGAAATCAGTCCTTTACTCCAGTTTTTGGTTCCTCAATGGTTCTCCTTGTTAAGAGAGAGTGCAAGCACTCTTCTGTCCATCTGACCAAACCTCTGCTTCTCTGGAGTGGAAACTTTCAGCTTCATCTGTGACTGATGGTCTCGGGGTGAATTAGCTTCCTTCAGGATCTGCAGAGGAGACCTGCCTTCAGATAGCAGAGCCTTGCtCTCTGCTTCTGTTTACCGAGAACAACCTTGTTCTCGTTCTCGTCCATGGGCGGTTTGCGGCTGGACAGCGGGGAGGAGGTTCCTTTCCCTCGGCTCTGAACCCCTCTAGCCCTGACGCCCGTCGCCCCAAACCCCACACCCAACCACTGGGGTTTAAACACCGCCTGGCTCGGGCTGCGGGGGTCAAACCGGGGGATCAGGATACCGCTTTCCCTCTGAACATTCAGGGTGCTGCTGGGTTTGCTGGAGGTTCTGACTGGTTCAGGATCCGCCAGCTTGGGCTGCTCTGCTTGTATCGGCACGTTTTCAGAAACAGGAGCAGGAGCTTCTGTTGCGGGTTCTCTTCTTCTATTGGCTGAACGACCTCTGGACTGGGCAGGATGGGCTCAGCAGAAACCTGAGGAAGAGCATAGGGGTGATCACTGTGCTCCTTCTCTTctgaaggaggaagaggagtaGCAGGGCGCTCCTCGGCTGAGGAGTAGAACTCTGGGGAGTAAACACCCTCTCTGCAGGCCAGCAGGCTCAGGCTGAGCTCCCTCCGGAGGGGAGATTCTCCCAGCAGCAGAGCCTCCTCAgcctcctccagagtgacctcCTCATCAGCGTCCACCTCCACCTGTGCCTCCCCGACCAGCACAAACGGACTGTTGCAGAAGGACCCGTACCCCACTGAGGGGCTGCAGGCCACGGGGCTGGACGGAGGGGCTGAGTGGTTGCTTTGGGGAGGGAGTAGGGGTTCTGTGGAGCTCAGCTCGTCCTGCTGCTCCACGGTGGACAGGCTGGGGTGTTTAGTGAAGGAGACGTGAGGGTGAAGAGCCGAGTCAGAGTCTGCCGTCTCGATGTCGCTCAGGAAGAACGTGCTGAGCTTGCGAGCCAACGAGCTGACAGTCACTTTCATACTGTCCTTCAGTGGGGTGCGAGCAACACCAGGCGTGGGCGACCGAGGGTCAAAACACACGGGCCCGACTGACTCCTGAACTTCGCCGACAGAAggggctgctgctgcacccCCCACCTGTATAGGTGTGCGGGAGATGCCACAGGACGGTGACCTGGGGTCAGCGAGCTCTGCCAGGCGTCGGTGATGAACTGCTTTCCCTGGTTCAAGCTTTGGTGTGGAAGCCACGGTCATCTTACTCTCACTAGATCCCATGATCAGCTTCTCTATTTACAACAGAGAGAAAACGATCCCTCGTCtCTGAAACCCAGCTATAGTCCTCCACAGCAGCCTCAGCACTCACTCCTCAAACAGTCCTTTCCTTAACCTGCTTTTATTACTCACAGCTCACTCTTTTAAATGAGTAAATCCAGTTTAATATTAAGTCGCTGTTGCTCTGgtagtctttctctctctctgtgtgactGCGCTCTCTCAGCACTGAAGCATTTAAATCGAGCTGTGCAGGTTTGCAGCGGTTTTCAAACCGTCCAACCAGCGGCGAGGGAGAGGCCGCgtcctgctctctgattggctgaagccGCCAGTTCC

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04914 Progesterone-mediated oocyte maturation

RNA

RNA id representative length rna type GC content exon number start site end site
TU133183 True 1922 lncRNA 0.54 8 9707666 9719982
TU133185 False 1874 lncRNA 0.54 7 9713669 9719982

Neighbor

gene id symbol gene type direction distance location
LOC103044428 NA coding downstream 182856 9508056 ~ 9524810 (-)
LOC103022230 LOC107698273 coding downstream 546967 9140699 ~ 9160699 (-)
LOC103035192 NA coding downstream 714645 8948749 ~ 8993021 (-)
glipr1 NA coding downstream 762037 8940127 ~ 8945629 (-)
LOC103029934 LOC108443716,LOC106606150 coding downstream 985861 8712872 ~ 8721805 (-)
LOC103042898 gnb3a,gnb3,LOC103042898,LOC108432288,LOC107672997,LOC102782474,LOC107549492 coding upstream 3309 9723291 ~ 9743918 (-)
p3h3 p3h3 coding upstream 34251 9754233 ~ 9770056 (-)
LOC103025791 LOC103025791 coding upstream 253299 9973281 ~ 9981178 (-)
LOC103040958 NA coding upstream 278673 9998655 ~ 10011711 (-)
LOC103025485 NA coding upstream 314765 10034747 ~ 10041021 (-)
G98751 NA non-coding downstream 19485 9593397 ~ 9688181 (-)
G98748 NA non-coding downstream 87125 9618529 ~ 9620541 (-)
G98750 NA non-coding downstream 113838 9589754 ~ 9593828 (-)
G98742 leng8,LOC107700201,LOC107724921,LOC107744285,LOC107672965 non-coding downstream 160127 9546334 ~ 9547539 (-)
G98718 NA non-coding downstream 240620 9460960 ~ 9467046 (-)
G98783 NA non-coding upstream 31186 9751168 ~ 9751711 (-)
G98805 NA non-coding upstream 52433 9772415 ~ 9790745 (-)
G98806 NA non-coding upstream 70986 9790968 ~ 9792998 (-)
G98873 NA non-coding upstream 114384 9834366 ~ 9835363 (-)
G98884 NA non-coding upstream 138741 9858723 ~ 9949160 (-)
LOC103043823 tpi1,tpi1b,LOC107700200 other downstream 129613 9560132 ~ 9578053 (-)
LOC103027931 zgc:92606,LOC108432344,LOC107549485,LOC107724707,LOC107672985,LOC107598403 other downstream 169996 9529636 ~ 9537670 (-)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 other downstream 528298 9162401 ~ 9179368 (-)
LOC103034868 NA other downstream 792735 8901468 ~ 8914931 (-)
G98533 osbpl8,LOC107656451,LOC107658748 other downstream 911917 8775798 ~ 8795749 (-)
G98804 NA other upstream 79641 9799623 ~ 9800918 (-)
erf erf other upstream 783972 10503954 ~ 10580725 (-)
G99033 NA other upstream 883948 10603930 ~ 10606219 (-)
G99212 LOC108443719,LOC107595576,LOC107657689,LOC107699452,LOC107593646 other upstream 1535615 11255597 ~ 11260752 (-)

Expression


Co-expression Network