rps19 (rps19,LOC107657656,LOC100689943)


Basic Information

Item Value
gene id rps19
gene name rps19,LOC107657656,LOC100689943
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 7259988 ~ 7267022 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007231140.3
TGTAAAGCTGAACGGGAGACCCCTCCAGTCCCTCTTCTCTCTGCTGTCCACAGGCAAGATGCCAGGCGGTGGTGTAACAGTCAAAGACGTCAACCAGCAGGAGTTTGTCCGGGCGCTGGCAGCCTTCCTGAAGAAGTCAGGAAAGCTGAAGGTGCCAGACTGGGTTGACATTGTCAAGCTGGCCAAGCACAAGGAGCTGGCCCCCTGCGATGACAACTGGTTCTACATTAGAGCTGCCTCCACAATCCGTCACCTTTACATGCGTAGTGGTGTCGGCGTGGGCTCCATGATCAAGGTCTACGGCGGCCGTAAAAGGAACGGAGTGTGCCCCTCTCACTTCAGCGTGGGCTCCAAGAACGTTGCCCGCAAAGTGCTTCAGGCCCTGGAAGCCCTCAAGATGTTGGAGAAGGACCCCAATGGTGGGCGCAGACTGACTCCACAGGGCACCAGGGACCTTGACAGAATCGCTGGTCAGGTTGCAGCTGCAAGCAAGAAGTcttgaaatgtaaaataaagtttgTGAAATCCAAA
>XM_022674241.1
GGTAACGCTGCGCCTCGTTGCTCTGCCTTATAAACTCTATTTTAAACGATTTACGTGCTCGAAACACATCCAGAACTGCGtcgttattttattaaagATGCCAGGCGGTGGTGTAACAGTCAAAGACGTCAACCAGCAGGAGTTTGTCCGGGCGCTGGCAGCCTTCCTGAAGAAGTCAGGAAAGCTGAAGGTGCCAGACTGGGTTGACATTGTCAAGCTGGCCAAGCACAAGGAGCTGGCCCCCTGCGATGACAACTGGTTCTACATTAGAGCTGCCTCCACAATCCGTCACCTTTACATGCGTAGTGGTGTCGGCGTGGGCTCCATGATCAAGGTCTACGGCGGCCGTAAAAGGAACGGAGTGTGCCCCTCTCACTTCAGCGTGGGCTCCAAGAACGTTGCCCGCAAAGTGCTTCAGGCCCTGGAAGCCCTCAAGATGTTGGAGAAGGACCCCAATGGTGGGCGCAGACTGACTCCACAGGGCACCAGGGACCTTGACAGAATCGCTGGTCAGGTTGCAGCTGCAAGCAAGAAGTcttgaaatgtaaaataaagtttgTGAAATCCAAA

Function

symbol description
rps19 Contributes as a structural constituent of ribosome. Acts upstream of or within several processes, including brain segmentation; erythrocyte development; and hemoglobin biosynthetic process. Located in ribosome. Used to study Diamond-Blackfan anemia and aplastic anemia. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia and Diamond-Blackfan anemia 1. Orthologous to human RPS19 (ribosomal protein S19).

NR:

description
40S ribosomal protein S19

GO:

id name namespace
GO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0035284 brain segmentation biological_process
GO:0048821 erythrocyte development biological_process
GO:0006412 translation biological_process
GO:0045646 regulation of erythrocyte differentiation biological_process
GO:0009790 embryo development biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02966 RP-S19e, RPS19; small subunit ribosomal protein S19e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007231140.3 False 531 mRNA 0.55 6 7259988 7267022
XM_022674241.1 True 570 mRNA 0.52 6 7259988 7266965

Neighbor

gene id symbol gene type direction distance location
bcam NA coding downstream 49533 7125529 ~ 7210455 (-)
LOC103047091 NA coding downstream 245857 6991706 ~ 7014131 (-)
LOC103047392 NA coding downstream 291601 6954816 ~ 6968387 (-)
osgin2 osgin2 coding downstream 339161 6909652 ~ 6920827 (-)
LOC111193434 NA coding downstream 424051 6802801 ~ 6835937 (-)
cadm4 cadm4,LOC107657657,LOC107582091,LOC107723444,LOC107699529,LOC107714698 coding upstream 31863 7298885 ~ 7671180 (-)
LOC103043627 NA coding upstream 460289 7727311 ~ 7732614 (-)
LOC103046166 NA coding upstream 566597 7833619 ~ 7842082 (-)
LOC103045648 NA coding upstream 617225 7884247 ~ 7890295 (-)
kcnn4 kcnn4,LOC107699521,LOC107595330,LOC107714738,LOC107570842,LOC107723512 coding upstream 650441 7917463 ~ 7968871 (-)
G98072 NA non-coding downstream 29523 7230131 ~ 7230465 (-)
G98071 NA non-coding downstream 40442 7219228 ~ 7219546 (-)
G98070 NA non-coding downstream 131184 7111665 ~ 7128804 (-)
G98053 NA non-coding downstream 178715 7076520 ~ 7081273 (-)
LOC111193435 NA non-coding downstream 187393 7068839 ~ 7072595 (-)
G98078 NA non-coding upstream 25989 7293011 ~ 7293242 (-)
G98079 NA non-coding upstream 44402 7311424 ~ 7312877 (-)
G98082 NA non-coding upstream 73443 7340465 ~ 7341499 (-)
G98083 NA non-coding upstream 143184 7410206 ~ 7521628 (-)
G98084 NA non-coding upstream 149293 7416315 ~ 7416820 (-)
LOC103044954 LOC103044954,LOC108429942,LOC100705775,LOC107699547,LOC107589412,LOC107582081,LOC103388254,LOC107599504,LOC103356523,LOC101077558 other downstream 409150 6843486 ~ 6850838 (-)
G97793 LOC103046199 other downstream 1237105 6015843 ~ 6022883 (-)
LOC111193431 si:ch211-105c13.3,LOC108441945,LOC107594941,LOC107673711,LOC107582067,LOC107677027,LOC107735771 other downstream 1247204 5959321 ~ 6012784 (-)
riiad1 NA other downstream 1666492 5590982 ~ 5593496 (-)
G97717 NA other downstream 1673322 5578562 ~ 5586666 (-)
LOC111193437 NA other upstream 417744 7684766 ~ 7709505 (-)
LOC103043934 LOC103043934,LOC108429921 other upstream 502107 7769129 ~ 7779284 (-)
LOC103044427 NA other upstream 514458 7781480 ~ 7808142 (-)
prelid3a prelid3a,LOC107715058 other upstream 1200154 8467176 ~ 8475912 (-)
G98533 osbpl8,LOC107656451,LOC107658748 other upstream 1508776 8775798 ~ 8795749 (-)

Expression


Co-expression Network