LOC103043627


Basic Information

Item Value
gene id LOC103043627
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 7727311 ~ 7732614 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250799.3
aggAAACAGAAAACCGCTGGAGAGGAAGATGGCAATGTAGCGACAGAGCTCTAGCTATTAACAGCCACATTATAATAACAGCAGCTCCGCCGTTTAATAAGCTCTTAAGTAACCTTAAATCCCCAAAACACAGCGAGCTGAGCAGTGTGAAATGAAGGCGTAAAGCCGGAGAGAGCTGCAGAGCGCTGTGCGGGGCGGCGgggagatggagaaagagaaattTACATCTGGTCCCAGCTCCTGGCTGGAGATGCACAACTTCATTGGTGACCTCGTGGCCTCAAGCGCATCAAGCTCGGCCGGTCAGCTGCTGAAATACCACAACCAGCAGTCTCTCCGCTCTGCCTGGGAGAATATGGGACCTGACATCCCATCGGCCAAAGCCTTACCCTTGCCTCAGAGCAGCCACAGCAGACAGAGCCAGGGGAAGAACATGGCAGCGCTGGGTCTGCAGCCCACTGATAGGGGTGAGGACACTGGGAATTGTGACGACCAACTACTTCGGCCACATACCTGCACCTGCCCAGGCTGCCCCCTTTCCTCCATTTCTATGGCGCCCACTTTGCAGAGCTTAAAACCCAGGAGTAGTTCTTTCCCCCAGAACCAATCAGGGCCACCTTCACAGTCGCAATCCCAATCCAAAGATCTCAGCTCAGTCCCAGTCAGCCTTGGCCTCTGTCTTGGCCTGGGTCTCTCCATAGAGGAGGCCAACAGCGAGCCCAGCAGTACCTCCAACCCTGAGCCAAGCCACCCTGAGCAGCAGGACAAGGGCACGAGCACCCACAGCCCGACGTCTGCGCCAAACTCAAACTCCAACCATCAGATTTGCCCTCCAGCCCTGCAAGCCTTCCCTTGCCTGTGCTGCCACCGTGGCTTCCAGCCGTGCGGCCACCTCCTGCGCCCCCAGCAGGGTTCTGACGGCCATTTGGGTCACACTCACTCGCATCACCACTACCACCATCACCACTGTCCCCTATCCTCTTGCCTGCCGTGCCCACAGTTGCGTGCCGGCGCCCGGTCGCCGCCTCCATTTCCTTGCCTGTCTTGCCAGCGCACATTCCCGACTTGTGCGCAGCTCCTGCGTCACCAACAGGGCCACGCCCAGCAAGAgggcatccagcagcagcatcCATGCATGCACTGCACGGCCTCCTTCCCCCGGCCCTCCCAGCTCCTGCAGCACCAGCGCACCCAGCACGCGTCCAAGGCTGGCGGCTTCCTTTGTGCAGAGTGTGGCCGAGCCTTTAACTCCCACAGCAACCTGCGTGTCCATCTCAACATCCACACGGGTGCCCGGCCATACACCTGCGCTGACTGCGGAAAGAGCTTCAGCCAATCAGGGGCGCTTAAAATCCACCGCCGCATCCACACGGGCGAGAGGCCATACAATTGTGCCTACTGCGGCCGCGGTTTCCCGCATCTGGCTGGAGTGAGGGCCCACCAGCGCACGCACACTGGAGAGAAGCCTTACAGCTGCAGCCAGTGTGGAAAGTGCTTCACCCAGTCGGGGGCGCTGAAGATCCACATGCGTATCCACACCGGCGAGAGGCCCTTCATTTGCGGCCTGTGCGGGAAGGGTTTCTCCAATCGCTCAGGCATCCGCTTCCACCACCGGACCGTGCACGGGATCGTCACAGAGCCAAACTCAGTGGGACGCCCCAGCCTCGCTGGCGTCCCCAGAACTTCCAGTACAGAGCTGCGGCATACGCAGCAGCCAGAAGCCTCCTCAGGCGGCAGCAGTTCTGGGCAGGCTACTGCTCGGCCCGGGGAGGATGGCATCGCTCGGAGCAGGGAACTTCCAGAGGACGGGGACGACGAAGCAAGAAGATCCCTGCCCTACGCCTGTGAGGACTGTGGCATGCGCTTCCAGGATGCTCCCTCCAGAAACAAGCATCAGGCAGAGCAGCACTACTCTAATGAAGAGGCGGAGACGGAAAAGAGGCCTGTAGATGCAGCTAAGGAGCACACTTAGCAATTCGGCTGAAGATGGGATTTATAAAATGTCTAAGGTGTATTCtaagggaatatatatatatatatatacatacaggggttggacaatgaaactaaaacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250799.3 True 2075 mRNA 0.58 3 7727311 7732614

Neighbor

gene id symbol gene type direction distance location
cadm4 cadm4,LOC107657657,LOC107582091,LOC107723444,LOC107699529,LOC107714698 coding downstream 56131 7298885 ~ 7671180 (-)
rps19 rps19,LOC107657656,LOC100689943 coding downstream 460289 7259988 ~ 7267022 (-)
bcam NA coding downstream 516856 7125529 ~ 7210455 (-)
LOC103047091 NA coding downstream 713180 6991706 ~ 7014131 (-)
LOC103047392 NA coding downstream 758924 6954816 ~ 6968387 (-)
LOC103046166 NA coding upstream 101005 7833619 ~ 7842082 (-)
LOC103045648 NA coding upstream 151633 7884247 ~ 7890295 (-)
kcnn4 kcnn4,LOC107699521,LOC107595330,LOC107714738,LOC107570842,LOC107723512 coding upstream 184849 7917463 ~ 7968871 (-)
LOC103046986 NA coding upstream 239963 7972577 ~ 7991490 (-)
has1 has1,LOC107723422,LOC107714739,LOC107657615,LOC107699477 coding upstream 360849 8093463 ~ 8103010 (-)
G98108 NA non-coding downstream 5025 7721304 ~ 7722286 (-)
G98106 NA non-coding downstream 47272 7679635 ~ 7680039 (-)
G98103 NA non-coding downstream 98182 7627924 ~ 7629129 (-)
G98083 NA non-coding downstream 205683 7410206 ~ 7521628 (-)
G98095 NA non-coding downstream 219409 7507001 ~ 7507902 (-)
G98153 NA non-coding upstream 57948 7790562 ~ 7793242 (-)
G98158 NA non-coding upstream 108459 7841073 ~ 7915483 (-)
G98165 smg9,LOC107595308 non-coding upstream 165400 7898014 ~ 7900793 (-)
G98174 NA non-coding upstream 224496 7957110 ~ 7957459 (-)
G98208 NA non-coding upstream 300477 8033091 ~ 8035465 (-)
LOC111193437 NA other downstream 17806 7684766 ~ 7709505 (-)
LOC103044954 LOC103044954,LOC108429942,LOC100705775,LOC107699547,LOC107589412,LOC107582081,LOC103388254,LOC107599504,LOC103356523,LOC101077558 other downstream 876473 6843486 ~ 6850838 (-)
G97793 LOC103046199 other downstream 1704428 6015843 ~ 6022883 (-)
LOC111193431 si:ch211-105c13.3,LOC108441945,LOC107594941,LOC107673711,LOC107582067,LOC107677027,LOC107735771 other downstream 1714527 5959321 ~ 6012784 (-)
riiad1 NA other downstream 2133815 5590982 ~ 5593496 (-)
LOC103043934 LOC103043934,LOC108429921 other upstream 36515 7769129 ~ 7779284 (-)
LOC103044427 NA other upstream 48866 7781480 ~ 7808142 (-)
prelid3a prelid3a,LOC107715058 other upstream 734562 8467176 ~ 8475912 (-)
G98533 osbpl8,LOC107656451,LOC107658748 other upstream 1043184 8775798 ~ 8795749 (-)
LOC103034868 NA other upstream 1168854 8901468 ~ 8914931 (-)

Expression


Co-expression Network