LOC111193424


Basic Information

Item Value
gene id LOC111193424
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 5237976 ~ 5241505 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674156.1
ctagctagctagcttgttggTTGTGGGTAGCCAAGGGTTTTGGTTGGCCTGAGCTGGTCTGAGTTTAGGAAGGCATGTTGAAGTGTATTGGTTAACATTATAGTTTGTTAAGTATGCGTTTCCCTGACGTTTGAACGTTAACGTTTCGTCAGTACAATGGTTGGAGctaactacagtctgtaaaacAGGGAATGCGTTTCTAAGTATCGTAGTAAATGGTATCCTATTGGCagttaatatttaaatgcattagACTAACCTGCTAAATAAGTGGTTAGCAGTGTGTTCCATAAGTAGTTCATGCCACCATTTGTACGGTTTTCTCATTCATTCTTGTTAAACCGTTTGTACTTTCTACAAATTATAGTAAtgttttgcttgtgtttataGGGAAATGCTGATGTTGTCAGGTCAGCAAGGCACCTGTTGTCCTTGTTGACCTCACAGTCAGGAAGTGCAGCTGGCCCTAGTCAAGAAAATGCCAGGCAGCAGTTCATTTCAGTTCAGGGTGAGAGAGCAGCTGTTCAGACCAAGATGGCCAGGTCCTTCCCTGGGTTTTTTACCAAAGGACGGGGGAAAAAAACGTTTTTGTGCTGCTGCACCTGTCCCCTGCAAACCAGCTAAAATAATGCCATTGACCATTTACCTCCTACCTCACCAATATGATCGGACACCTAAGGAAGAGGACCAACTGTTGCACATGCAAGCCGGGTTGGGGCGTAGGACGGCATACATGGATGAAAATGCTACACACGAGGAAATATGTGCACAACTAAAGGAACTATATCCAAAATTAAAGGAGCTGACAGGTGGTTGGCTCATTTACAAAGCCTCAGGAGGGTGGGGTACCCGAAAGCTCACTCTTGTAACACCTGATGATGGAGGATACTGCAGTAAGCTTTTGAAAACTGCAAGTCAGAATGGTAAAGGAATTCTGTATATAGCTCCTCTTCAAATGGAACTTGATACTTCTCCTCTGCCACCAACCTCGGGAAGCTTCAGCGGCATGCCAAAAGAGAAGTGCCAGAAATGTGGTGTCTTTTACCCGCTTGTCATCCTACCTGCCCATATAAAGTCCTGTGAGGTCATCAATCTAGAGGATGATCAGAATGCAACCTGTCCCATATGTGAGGAGGAAATGCCACTTGATATTCTGGAAATACATGCAAGTTCTTGCAAAGAAAGGGTACCACCTGTAGACAGCTTGTCCCAGGCAGGACCATCCATACCCCACACTTCTTCAGGAAATGTCACTCTACTTGCATGTAATGCTGAACCTTCAAATGCAACTCATGACACATGCATGAATGATTATGACTGGAAAACTCATCCAGATCCTGAAAGAGCAGCAACTCTTTATAGTAAGGGGATTCTTCGCTTTCATGAGACTGGGAAGCCCTTCTTCATGAACATGGATTTGAGAATGAGCAAGGAGGATCAAGACCGAGAACTCCTTGCATTGTACAAGCAGTCAAGTGTGGAATGGGGATGTCCAGTGAAGTGTAAACTTCAAGGTGACTGTCTATACAAGTGCAAATTTAcacagtgtttatttcttgtctGACATTGCTGTTCAACATATTTCTTATTGATTTAGATACCAACCATATATAGTTATTTCTGTGTCGCTTATTAGAATAGACCAAATAATGCTCAAATCAATGAAAATCAGaccttcttgtttatttttcaaCAGAAATAACTTCTGATTCATTTTCAGCAATAAGTGCAGCCATTAACAGTGAAATGTCAGCCCCCTTTTCATCATCACCTAAATAATTGCCCCATAGTTTTATTGAGCTGGTCTAAAAAgtactatattattattcagtTGAATCTTTTAGTGATCTTGTAGTG
>XM_022674157.1
gtgttttgaacttgatgatgtggtgaCATTTGCTGTTGAAAAAAATTCATTTCAAAATTACAACTTGcaattttcagatttaaaaaattcaGATGCATACATTTCAAGTCGCTCAAATTCAGATCTCAGAAATACGAATTCAAACCGGAGTTCCAACATCCGGGGCTTCCCAGGAAAAGTAAACTGTTTAGAGCGATCGATCGCAGCATTAACGAGACACAGCGCCATCTCACGGCTGCACTCGAGTTCACGTCTGTGGAGGTGAAGCTGAGCAGATGAGCCGCGTTTGTACGGGAGAAAACTAAGGATGAACCCCAACGAGGGAAATGCTGATGTTGTCAGGTCAGCAAGGCACCTGTTGTCCTTGTTGACCTCACAGTCAGGAAGTGCAGCTGGCCCTAGTCAAGAAAATGCCAGGCAGCAGTTCATTTCAGTTCAGGGTGAGAGAGCAGCTGTTCAGACCAAGATGGCCAGGTCCTTCCCTGGGTTTTTTACCAAAGGACGGGGGAAAAAAACGTTTTTGTGCTGCTGCACCTGTCCCCTGCAAACCAGCTAAAATAATGCCATTGACCATTTACCTCCTACCTCACCAATATGATCGGACACCTAAGGAAGAGGACCAACTGTTGCACATGCAAGCCGGGTTGGGGCGTAGGACGGCATACATGGATGAAAATGCTACACACGAGGAAATATGTGCACAACTAAAGGAACTATATCCAAAATTAAAGGAGCTGACAGGTGGTTGGCTCATTTACAAAGCCTCAGGAGGGTGGGGTACCCGAAAGCTCACTCTTGTAACACCTGATGATGGAGGATACTGCAGTAAGCTTTTGAAAACTGCAAGTCAGAATGGTAAAGGAATTCTGTATATAGCTCCTCTTCAAATGGAACTTGATACTTCTCCTCTGCCACCAACCTCGGGAAGCTTCAGCGGCATGCCAAAAGAGAAGTGCCAGAAATGTGGTGTCTTTTACCCGCTTGTCATCCTACCTGCCCATATAAAGTCCTGTGAGGTCATCAATCTAGAGGATGATCAGAATGCAACCTGTCCCATATGTGAGGAGGAAATGCCACTTGATATTCTGGAAATACATGCAAGTTCTTGCAAAGAAAGGGTACCACCTGTAGACAGCTTGTCCCAGGCAGGACCATCCATACCCCACACTTCTTCAGGAAATGTCACTCTACTTGCATGTAATGCTGAACCTTCAAATGCAACTCATGACACATGCATGAATGATTATGACTGGAAAACTCATCCAGATCCTGAAAGAGCAGCAACTCTTTATAGTAAGGGGATTCTTCGCTTTCATGAGACTGGGAAGCCCTTCTTCATGAACATGGATTTGAGAATGAGCAAGGAGGATCAAGACCGAGAACTCCTTGCATTGTACAAGCAGTCAAGTGTGGAATGGGGATGTCCAGTGAAGTGTAAACTTCAAGGTGACTGTCTATACAAGTGCAAATTTAcacagtgtttatttcttgtctGACATTGCTGTTCAACATATTTCTTATTGATTTAGATACCAACCATATATAGTTATTTCTGTGTCGCTTATTAGAATAGACCAAATAATGCTCAAATCAATGAAAATCAGaccttcttgtttatttttcaaCAGAAATAACTTCTGATTCATTTTCAGCAATAAGTGCAGCCATTAACAGTGAAATGTCAGCCCCCTTTTCATCATCACCTAAATAATTGCCCCATAGTTTTATTGAGCTGGTCTAAAAAgtactatattattattcagtTGAATCTTTTAGTGATCTTGTAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674156.1 True 1857 mRNA 0.42 8 5237976 5241066
XM_022674157.1 False 1789 mRNA 0.43 9 5237976 5241505

Neighbor

gene id symbol gene type direction distance location
LOC111193388 LOC107686844 coding downstream 648 5235831 ~ 5237328 (-)
snrnp48 NA coding downstream 76571 5152120 ~ 5161405 (-)
LOC103035853 LOC108437324,LOC103366216 coding downstream 88594 5122941 ~ 5149382 (-)
trnas-aga_10 NA coding downstream 145009 5092886 ~ 5092967 (-)
c11h8orf37 LOC103027925 coding downstream 146394 5084250 ~ 5091582 (-)
cops7a cops7a,csn7a,LOC108432301,LOC106605087,LOC107582055 coding upstream 153862 5395367 ~ 5411242 (-)
LOC103037217 NA coding upstream 170348 5411853 ~ 5418257 (-)
LOC103038292 NA coding upstream 194043 5435548 ~ 5441776 (-)
LOC111193427 NA coding upstream 202084 5443589 ~ 5450059 (-)
LOC111193428 NA coding upstream 216960 5458465 ~ 5462055 (-)
G97396 NA non-coding downstream 115372 5121927 ~ 5122604 (-)
G97393 NA non-coding downstream 124318 5110394 ~ 5113658 (-)
G97388 NA non-coding downstream 139468 5098072 ~ 5098508 (-)
G97386 NA non-coding downstream 146064 5091640 ~ 5091912 (-)
G97385 NA non-coding downstream 157858 5079845 ~ 5080118 (-)
LOC111193426 NA non-coding upstream 112148 5353653 ~ 5354589 (-)
G97690 NA non-coding upstream 180289 5421794 ~ 5422494 (-)
G97694 NA non-coding upstream 193074 5434579 ~ 5434789 (-)
LOC111193398 NA non-coding upstream 244789 5486294 ~ 5487313 (-)
LOC111193399 NA non-coding upstream 255598 5497103 ~ 5501363 (-)
dek dek other downstream 784974 4444229 ~ 4453002 (-)
LOC107197182 NA other downstream 1059550 4150003 ~ 4178426 (-)
mboat1 mboat1 other downstream 1338728 3878696 ~ 3899248 (-)
LOC103031019 NA other downstream 3422942 1811701 ~ 1815034 (-)
carmil1 carmil1 other downstream 3459876 1582007 ~ 1778100 (-)
LOC103028279 NA other upstream 299408 5540913 ~ 5573904 (-)
G97717 NA other upstream 337057 5578562 ~ 5586666 (-)
riiad1 NA other upstream 349477 5590982 ~ 5593496 (-)
LOC111193431 si:ch211-105c13.3,LOC108441945,LOC107594941,LOC107673711,LOC107582067,LOC107677027,LOC107735771 other upstream 717816 5959321 ~ 6012784 (-)
G97793 LOC103046199 other upstream 774338 6015843 ~ 6022883 (-)

Expression


Co-expression Network