LOC103037217


Basic Information

Item Value
gene id LOC103037217
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 5411853 ~ 5418257 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022674167.1
tgtgtgtgagcgcgtGCATGCCTCGGACGTGCGTGAGCGCGAGCTGAGCGTGAGGAGCTGGTGTGGAGGAGCGCACAAACACCGGAAGGACAGACAGAGGAGATCAGAGGAGGAAGGAAAGGTGGAGAAAGTTCTCCTCAGTGATTTTGTGGTTTTCAGCTTCACGCGCCTCTTTGTAGGACTTATTAAAGTGGGCGCGCGCGGCTGTGTGACAGTGCGGGTCTCGCGGAGGGGGTGAGCATGGCGGATATAGAGAACTACAGCAGTCTGCAGGAGTTCACCGAGGAGCTCACAGCGCGCGGAGACAAGCCCATCCTCCGCTCAGCGCACGCGAGAGCAGCAGGTGTGGTTAAGGGGATGGAGTGTGTGAGGGGACAGATGGCTGCTGTGCTGCTGGTGGCTCTGCTGGCATCGATTTGTGCCAACATAGTTCTCGGAGTTCTCTTGATGAACAGCAGATCTGCTGGTACCTCGGTCAGTGAGAGCACAGCTGGCTCTGGGAGGGAGGCGGCCTCTCTGACCCTGAAGCTGAGCGCCCTGCAGGAGCGTTTCTCCGTCCTGTGCTCTGAGTACACCACCCTCGGCAGCAGCTGCAGAACACCAGTAAAGACGTGCAGGCCGTGTCCGGAGGGCTGGACACATCTGCAGGGGAAGTGCTACTTCTTCAGTGAAGACAAACTGGACTTTAGGAACAGTAAAGACAGCTGTGCTTCTATGGGCAGCCATCTAACCATCCTCCACACCTACCAGCAAcatGATGATCTGGGAAAAATAGCTCGTTCTTTTGGTGGGTTTGACTACCATTACTGGATCGGCCTGACCGACACTGAAGAAGAGGGAGTGTGGAAATGGGTGGACAACACAGTGGTCAACAAAACGTACTGGAAGAACGAAGAGCCAGATAATCACCAGTCTGGAGGACTCCACGGTGAGGACTGTGCTGTGCTGGAGTCCCACTCTAAGTCCTGGTACGACGTACCCTGCGATTTCCTCTACAAGCGTATCTGTGAGATGGATGCTGTTCCTGTGCAGTAAAAACGTGGAAACTGTGGATTGTTTACCAAAGAGCTAATCTGAAAGCTGTAATTGTAAATATATCAAAAAATGAATGTTTAAAAGTTGTCTAATGGAGGATAAGCCAATTAAACCAAGTAAAAGTATTGCTACTGCAGGGAAATGATGAGTTAGCATACCAAGAAAGCTAAGCTAGCACGCTTAGCTGGGGAATTTGCCGCAaagatatgtatttttaattttaatgatgaattataattaattgattgattgattgattgatttgcatatCCTGAGTGTCTGCAcaccaaagtacacagaaacatcatcctcgcctatagcacagttagcaCTGAAGTTagcttacttttttaaatagtgtattttttaaaactgaaaacttgttttgtttttttaattgggaGATGAAGCATATAACAAAATGCTGATTTATCACACCTCAGACTGTGATTGTGGAAAAACATTAGATTTTTTGTACCTTTTGAATAtgttattttgtacattttgcactgtttttcacaaataaagaaaattatctGCTGAGCTGA
>XM_022674168.1
ctgtgtgtgtgagcgcgtGCATGCCTCGGACGTGCGTGAGCGCGAGCTGAGCGTGAGGAGCTGGTGTGGAGGAGCGCACAAACACCGGAAGGACAGACAGAGGAGATCAGAGGAGGAAGGAAAGGTGGAGAAAGTTCTCCTCAGTGATTTTGTGGTTTTCAGCTTCACGCGCCTCTTTGTAGGACTTATTAAAGTGGGCGCGCGCGGCTGTGTGACAGTGCGGGTCTCGCGGAGGGGGTGAGCATGGCGGATATAGAGAACTACAGCAGTCTGCAGGAGTTCACCGAGGAGCTCACAGCGCGCGGAGACAAGCCCATCCTCCGCTCAGCGCACGCGAGAGCAGGTGTGGTTAAGGGGATGGAGTGTGTGAGGGGACAGATGGCTGCTGTGCTGCTGGTGGCTCTGCTGGCATCGATTTGTGCCAACATAGTTCTCGGAGTTCTCTTGATGAACAGCAGATCTGCTGGTACCTCGGTCAGTGAGAGCACAGCTGGCTCTGGGAGGGAGGCGGCCTCTCTGACCCTGAAGCTGAGCGCCCTGCAGGAGCGTTTCTCCGTCCTGTGCTCTGAGTACACCACCCTCGGCAGCAGCTGCAGAACACCAGTAAAGACGTGCAGGCCGTGTCCGGAGGGCTGGACACATCTGCAGGGGAAGTGCTACTTCTTCAGTGAAGACAAACTGGACTTTAGGAACAGTAAAGACAGCTGTGCTTCTATGGGCAGCCATCTAACCATCCTCCACACCTACCAGCAAcatGATGATCTGGGAAAAATAGCTCGTTCTTTTGGTGGGTTTGACTACCATTACTGGATCGGCCTGACCGACACTGAAGAAGAGGGAGTGTGGAAATGGGTGGACAACACAGTGGTCAACAAAACGTACTGGAAGAACGAAGAGCCAGATAATCACCAGTCTGGAGGACTCCACGGTGAGGACTGTGCTGTGCTGGAGTCCCACTCTAAGTCCTGGTACGACGTACCCTGCGATTTCCTCTACAAGCGTATCTGTGAGATGGATGCTGTTCCTGTGCAGTAAAAACGTGGAAACTGTGGATTGTTTACCAAAGAGCTAATCTGAAAGCTGTAATTGTAAATATATCAAAAAATGAATGTTTAAAAGTTGTCTAATGGAGGATAAGCCAATTAAACCAAGTAAAAGTATTGCTACTGCAGGGAAATGATGAGTTAGCATACCAAGAAAGCTAAGCTAGCACGCTTAGCTGGGGAATTTGCCGCAaagatatgtatttttaattttaatgatgaattataattaattgattgattgattgattgatttgcatatCCTGAGTGTCTGCAcaccaaagtacacagaaacatcatcctcgcctatagcacagttagcaCTGAAGTTagcttacttttttaaatagtgtattttttaaaactgaaaacttgttttgtttttttaattgggaGATGAAGCATATAACAAAATGCTGATTTATCACACCTCAGACTGTGATTGTGGAAAAACATTAGATTTTTTGTACCTTTTGAATAtgttattttgtacattttgcactgtttttcacaaataaagaaaattatctGCTGAGCTGA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022674167.1 False 1583 mRNA 0.47 6 5411853 5418254
XM_022674168.1 True 1583 mRNA 0.47 6 5411853 5418257

Neighbor

gene id symbol gene type direction distance location
cops7a cops7a,csn7a,LOC108432301,LOC106605087,LOC107582055 coding downstream 611 5395367 ~ 5411242 (-)
col6a6 NA coding downstream 144404 5187076 ~ 5267449 (-)
LOC111193424 NA coding downstream 170348 5237976 ~ 5241505 (-)
LOC111193388 LOC107686844 coding downstream 174525 5235831 ~ 5237328 (-)
snrnp48 NA coding downstream 250448 5152120 ~ 5161405 (-)
LOC103038292 NA coding upstream 17291 5435548 ~ 5441776 (-)
LOC111193427 NA coding upstream 25332 5443589 ~ 5450059 (-)
LOC111193428 NA coding upstream 40208 5458465 ~ 5462055 (-)
LOC103027644 NA coding upstream 53192 5471449 ~ 5477136 (-)
LOC111193391 NA coding upstream 60462 5478719 ~ 5491460 (-)
LOC111193426 NA non-coding downstream 57264 5353653 ~ 5354589 (-)
G97396 NA non-coding downstream 289249 5121927 ~ 5122604 (-)
G97393 NA non-coding downstream 298195 5110394 ~ 5113658 (-)
G97388 NA non-coding downstream 313345 5098072 ~ 5098508 (-)
G97386 NA non-coding downstream 319941 5091640 ~ 5091912 (-)
G97690 NA non-coding upstream 3537 5421794 ~ 5422494 (-)
G97694 NA non-coding upstream 16322 5434579 ~ 5434789 (-)
LOC111193398 NA non-coding upstream 68037 5486294 ~ 5487313 (-)
LOC111193399 NA non-coding upstream 78846 5497103 ~ 5501363 (-)
G97734 NA non-coding upstream 255082 5673339 ~ 5673728 (-)
dek dek other downstream 958851 4444229 ~ 4453002 (-)
LOC107197182 NA other downstream 1233427 4150003 ~ 4178426 (-)
mboat1 mboat1 other downstream 1512605 3878696 ~ 3899248 (-)
LOC103031019 NA other downstream 3596819 1811701 ~ 1815034 (-)
carmil1 carmil1 other downstream 3633753 1582007 ~ 1778100 (-)
LOC103028279 NA other upstream 122656 5540913 ~ 5573904 (-)
G97717 NA other upstream 160305 5578562 ~ 5586666 (-)
riiad1 NA other upstream 172725 5590982 ~ 5593496 (-)
LOC111193431 si:ch211-105c13.3,LOC108441945,LOC107594941,LOC107673711,LOC107582067,LOC107677027,LOC107735771 other upstream 541064 5959321 ~ 6012784 (-)
G97793 LOC103046199 other upstream 597586 6015843 ~ 6022883 (-)

Expression


Co-expression Network