RNA id: XM_022674167.1


Basic Information

Item Value
RNA id XM_022674167.1
length 1583
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC103037217
representative False

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 5411853 ~ 5418257 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtgtgtgagcgcgtGCATGCCTCGGACGTGCGTGAGCGCGAGCTGAGCGTGAGGAGCTGGTGTGGAGGAGCGCACAAACACCGGAAGGACAGACAGAGGAGATCAGAGGAGGAAGGAAAGGTGGAGAAAGTTCTCCTCAGTGATTTTGTGGTTTTCAGCTTCACGCGCCTCTTTGTAGGACTTATTAAAGTGGGCGCGCGCGGCTGTGTGACAGTGCGGGTCTCGCGGAGGGGGTGAGCATGGCGGATATAGAGAACTACAGCAGTCTGCAGGAGTTCACCGAGGAGCTCACAGCGCGCGGAGACAAGCCCATCCTCCGCTCAGCGCACGCGAGAGCAGCAGGTGTGGTTAAGGGGATGGAGTGTGTGAGGGGACAGATGGCTGCTGTGCTGCTGGTGGCTCTGCTGGCATCGATTTGTGCCAACATAGTTCTCGGAGTTCTCTTGATGAACAGCAGATCTGCTGGTACCTCGGTCAGTGAGAGCACAGCTGGCTCTGGGAGGGAGGCGGCCTCTCTGACCCTGAAGCTGAGCGCCCTGCAGGAGCGTTTCTCCGTCCTGTGCTCTGAGTACACCACCCTCGGCAGCAGCTGCAGAACACCAGTAAAGACGTGCAGGCCGTGTCCGGAGGGCTGGACACATCTGCAGGGGAAGTGCTACTTCTTCAGTGAAGACAAACTGGACTTTAGGAACAGTAAAGACAGCTGTGCTTCTATGGGCAGCCATCTAACCATCCTCCACACCTACCAGCAAcatGATGATCTGGGAAAAATAGCTCGTTCTTTTGGTGGGTTTGACTACCATTACTGGATCGGCCTGACCGACACTGAAGAAGAGGGAGTGTGGAAATGGGTGGACAACACAGTGGTCAACAAAACGTACTGGAAGAACGAAGAGCCAGATAATCACCAGTCTGGAGGACTCCACGGTGAGGACTGTGCTGTGCTGGAGTCCCACTCTAAGTCCTGGTACGACGTACCCTGCGATTTCCTCTACAAGCGTATCTGTGAGATGGATGCTGTTCCTGTGCAGTAAAAACGTGGAAACTGTGGATTGTTTACCAAAGAGCTAATCTGAAAGCTGTAATTGTAAATATATCAAAAAATGAATGTTTAAAAGTTGTCTAATGGAGGATAAGCCAATTAAACCAAGTAAAAGTATTGCTACTGCAGGGAAATGATGAGTTAGCATACCAAGAAAGCTAAGCTAGCACGCTTAGCTGGGGAATTTGCCGCAaagatatgtatttttaattttaatgatgaattataattaattgattgattgattgattgatttgcatatCCTGAGTGTCTGCAcaccaaagtacacagaaacatcatcctcgcctatagcacagttagcaCTGAAGTTagcttacttttttaaatagtgtattttttaaaactgaaaacttgttttgtttttttaattgggaGATGAAGCATATAACAAAATGCTGATTTATCACACCTCAGACTGTGATTGTGGAAAAACATTAGATTTTTTGTACCTTTTGAATAtgttattttgtacattttgcactgtttttcacaaataaagaaaattatctGCTGAGCTGA

Function

GO:

id name namespace
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650520.1 lncRNA downstream 57264 5353653 ~ 5354589 (-) True LOC111193426
TU131238 lncRNA downstream 289249 5121927 ~ 5122604 (-) True G97396
TU131235 lncRNA downstream 298195 5110394 ~ 5113658 (-) True G97393
TU131227 lncRNA downstream 313345 5098072 ~ 5098508 (-) True G97388
TU131225 lncRNA downstream 319941 5091640 ~ 5091912 (-) True G97386
TU131617 lncRNA upstream 3540 5421794 ~ 5422494 (-) True G97690
TU131621 lncRNA upstream 16325 5434579 ~ 5434789 (-) True G97694
XR_002650499.1 lncRNA upstream 68040 5486294 ~ 5487313 (-) True LOC111193398
XR_002650500.1 lncRNA upstream 78849 5497103 ~ 5501363 (-) True LOC111193399
TU131655 lncRNA upstream 122659 5540913 ~ 5573904 (-) False LOC103028279
XM_022674166.1 mRNA downstream 611 5395367 ~ 5411242 (-) True cops7a
XM_022674153.1 mRNA downstream 144404 5187076 ~ 5267449 (-) True col6a6
XM_022674172.1 mRNA upstream 17294 5435548 ~ 5441776 (-) True LOC103038292
XM_022674173.1 mRNA upstream 25335 5443589 ~ 5450059 (-) True LOC111193427
XM_022674174.1 mRNA upstream 40211 5458465 ~ 5462055 (-) True LOC111193428
XM_022674054.1 mRNA upstream 53195 5471449 ~ 5477136 (-) True LOC103027644
XM_022674040.1 mRNA upstream 60465 5478719 ~ 5491460 (-) True LOC111193391
trnas-aga_10 other downstream 318886 5092886 ~ 5092967 (-) True trnas-aga_10
XR_001518422.2 other downstream 1237646 4150003 ~ 4174207 (-) False LOC107197182
XR_002650512.1 other downstream 3140276 2270503 ~ 2271577 (-) True LOC111193410
TU129943 other downstream 3596935 1811838 ~ 1814918 (-) False LOC103031019
XR_002650509.1 other downstream 4979460 431659 ~ 432393 (-) True LOC111193405
TU131662 other upstream 160308 5578562 ~ 5586666 (-) True G97717
TU131666 other upstream 172744 5590998 ~ 5593483 (-) False riiad1
TU131741 other upstream 541067 5959321 ~ 6012419 (-) False LOC111193431
TU131744 other upstream 552595 5970849 ~ 6012419 (-) False LOC111193431
TU131761 other upstream 564681 5982935 ~ 6012784 (-) True LOC111193431

Expression Profile