RNA id: TU131235


Basic Information

Item Value
RNA id TU131235
length 1403
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id G97393
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 5110394 ~ 5113658 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGAGTAAAATGATTACCACTGGAGTCCTGAGTCTAAGTCTGCTGCTGTCCGCGGCAGTGCTCCGGGGGAGCCTCGCCAGCGTGGAGCTCCGAGCTCGGTCAATCAGCGGGGGAGGACGCGGTGCTGCGCTGCCCGGCGGAGGCTCAGCCCGGGGTCCGCTACTGCTCCGTCATATGGTACAAGGTCAGCGAGGCTCCCTCTCGCAAGCTGTCTGGTTTAGTGATGAAGAACCTGACACAAAGTAATGGCACTGTCCAAAGATACAAAGGTTTCGTGAGGGAGGTGCAGATACTTGAGGATTCGCAGAGCCTTCTCTTGCCTAATGTGACTCAGGAGGATTCTGGGGAGATACCTCTGCTTTCTGTCTGCTCCTGTTGGTCATCAGAACCAGGAGAAAGAGATTCACCTGGCGGTTTACGACCATGCCGATGAGGAAAATATGAGGAAGGAAACAAGTGAAGGAAAATATGAGCatgaaaatgatacagtatTCATGGTGCTTGCCATCACTTTACTCATCGTGGCAATGCTGATGCTTTATTGTAGTTATatttGTCTACGAAATACACTAACCCGCCACAAAGAGAAGTTCTCAAAAAATGCTCTGTTAAAGAAGACTCAGCATGAAATGAAGCATGTCATCGTTAGCCTAAAACCAAATGGAATAGTATCCAAGATTTTACCTGAGCAACAATATGTCTGACCCTACCAACTTCATCATCTGGCCTGAAGAATAGAGGAACACATGACATTTTAGTGAGCATCATTGTGGATCTATACAGCACATTGCGTCTGGATAGTGTGCTCTTCATAATACTAACAGACACACTGTCAGAGTTGAGTattgtagtgtgtgttgagaaTCAGAGATCGGGTCATGAAGGCGGAGAGCCAATCAGGAGTCAGGTCATAAATGACAAAAACTAATGGGCTTCTTACAATGTGATATACAGTCACATTCAATACTTTCCACAGGGGTCATCCCATCTCATGATGCTGGTTCATTATGATGTGAATTATaggttatttttatatattttttattttaaagcattattgTAAAGAGTTGTAATGTGTCTAATCTAACCTAACACGCTTTGAAAGACAAGAACAGCTCTTCTTTAATTTGAACAGTCTATAAGCTTAAAACAGCTGTACgcagtttttaaaattacatttcattatGTGTGTTCTGATCAGGCTGTGCTCTCTCTGGAAACTTTGCACTGTTTAATTCAAAACCGAAATGAATGTATGACAGAATCTTCATCACTGTGATCTATCATCAATCATGTCACACACGCAGACATGCATTGATGTTCTAATTTTTATAGAAGCAATGAAATGTTTGTAATCTGGATATGAAAAATCAACACAAATGCAGTCTTAAGCTAATGTTTTG

Function

GO: NA

KEGG:

id description
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131227 lncRNA downstream 11886 5098072 ~ 5098508 (-) True G97388
TU131225 lncRNA downstream 18482 5091640 ~ 5091912 (-) True G97386
TU131224 lncRNA downstream 30276 5079845 ~ 5080118 (-) True G97385
TU131223 lncRNA downstream 31769 5078412 ~ 5078625 (-) True G97384
TU131209 lncRNA downstream 77612 5031904 ~ 5032782 (-) True G97371
TU131238 lncRNA upstream 8269 5121927 ~ 5122604 (-) True G97396
XR_002650520.1 lncRNA upstream 239995 5353653 ~ 5354589 (-) True LOC111193426
TU131617 lncRNA upstream 308136 5421794 ~ 5422494 (-) True G97690
TU131621 lncRNA upstream 320921 5434579 ~ 5434789 (-) True G97694
XR_002650499.1 lncRNA upstream 372636 5486294 ~ 5487313 (-) True LOC111193398
XM_007228858.3 mRNA downstream 18812 5084250 ~ 5091582 (-) True c11h8orf37
XM_007228862.3 mRNA downstream 121917 4987157 ~ 4988477 (-) True LOC103029284
XM_022674038.1 mRNA downstream 146978 4960238 ~ 4963416 (-) True LOC111193387
XM_007228863.3 mRNA downstream 164695 4924824 ~ 4945699 (-) True nagpa
XM_007228864.3 mRNA downstream 201759 4899420 ~ 4908635 (-) True tp53inp1
XM_022674149.1 mRNA upstream 9283 5122941 ~ 5149382 (-) True LOC103035853
XM_007228853.2 mRNA upstream 38462 5152120 ~ 5161405 (-) True snrnp48
XM_007228854.3 mRNA upstream 38462 5152120 ~ 5161380 (-) False snrnp48
XM_022674155.1 mRNA upstream 73418 5187076 ~ 5267449 (-) False col6a6
XM_022674153.1 mRNA upstream 73418 5187076 ~ 5267449 (-) True col6a6
trnas-aga_10 other downstream 17427 5092886 ~ 5092967 (-) True trnas-aga_10
XR_001518422.2 other downstream 936187 4150003 ~ 4174207 (-) False LOC107197182
XR_002650512.1 other downstream 2838817 2270503 ~ 2271577 (-) True LOC111193410
TU129943 other downstream 3295476 1811838 ~ 1814918 (-) False LOC103031019
XR_002650509.1 other downstream 4678001 431659 ~ 432393 (-) True LOC111193405
TU131662 other upstream 464904 5578562 ~ 5586666 (-) True G97717
TU131666 other upstream 477340 5590998 ~ 5593483 (-) False riiad1
TU131741 other upstream 845663 5959321 ~ 6012419 (-) False LOC111193431
TU131744 other upstream 857191 5970849 ~ 6012419 (-) False LOC111193431
TU131761 other upstream 869277 5982935 ~ 6012784 (-) True LOC111193431

Expression Profile