RNA id: XM_022674173.1


Basic Information

Item Value
RNA id XM_022674173.1
length 1371
RNA type mRNA
GC content 0.36
exon number 9
gene id LOC111193427
representative True

Chromosome Information

Item Value
chromosome id NC_035907.1
NCBI id CM008310.1
chromosome length 11650534
location 5443589 ~ 5450059 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TAACTTTACGTaaatacccaagatactgtTCTAAACTACGCTGACTTCAGTgcgcagaattcagtgtgctttcaaaataaaagttcctGTTCCTACACCAATggatgtattaaatatttactataaataatcTGTCCTATAATACAAATAATCTGTTTTTGATCAACAGTAGGACATGATGATTTCCGTCCAGCAGACATTTacatcaacagcagcagcactgttAAAGTAGGAGAAAGCATAACGATAAAGTGTGCCATCTTTCAGCACAATCATTCCAATGAGTTGATTAATATGTACCTGTGTAAAAATGGTGTTGGAGTGGAGATGGGGCCGATTGGACAGAAAGGAGATTATGTCTTTATTAAAAAGAACGTTTCAGAGCTGGACTCTGGAAACTACAGCTGTGTTTACTCCTCAAAAAAATACCCTGCGTCGAATGTGAGTGCACCCGGACAAAAGACCATCCATCTTCAAGTCTCCTCTGAACCTGCTGGTTCTGTTCAGTCAAATTATACGAAGTTCCTGCTGTTCTCTCTCGGTTCTCTGCTCCTGATTGGTTCGCTGGTTTTGGGAACATGTTGTACACGGAGATCCTGTAACAagcccAAAAACCGAGGAGAGAGGACTGATAGAAAAGATCAGCTGATCAGCTGTGAAAAAGTGCAGGATAATACTGGCCAGTTTAAAGGTTCTGTGCCAGTGCATCAGGCAGGAAAAAGGACTGAGAACAATGATGAGATGTATGCATACGCCACAATTCCAGACATCACAGTTGACCCAGTGCCATCCACCTCTGATGCTGAGCTTCCTGTGTACAGTCTCGCTCAAAACAGTGCCATATACAGCACAGCTCGAAAACCTGAAAGACTTTCCTACATGGAGACTAAACAAACTGCAGCTATCTATGGAAAAGtccagaaaaaaggaaaaggctAATTATGAATTGTTATCATGTGTGAATAATCAGTGTTAAtcattacagttttttacactttacaataatacattacattaatacattaattaacagtactcaCGACATAAAGTCTAGACTAATAATTAATTACCACTAATTAAGaagttattcattattttttaaactaaacaaatattttttttaactattgtcaattaataaatagttgatACAAGAATTTTAACCAAGTTAATATCTGTGGTCTTACTGTAAAGCCATTTTTTGTAAAAGGTTCAGAAAAGTAAAGTTTTTAATTATCTTTTGTATGTATTGTAGAAAACTGCAgtagtttttacagtaaattgcAGTAAACTGTGATATATGTACAGAGATTTATACTGTGAGAAACTGGAACTACGGGATGTTGCtgtaaataaaagtgaaatattata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131621 lncRNA downstream 8800 5434579 ~ 5434789 (-) True G97694
TU131617 lncRNA downstream 21095 5421794 ~ 5422494 (-) True G97690
XR_002650520.1 lncRNA downstream 89000 5353653 ~ 5354589 (-) True LOC111193426
TU131238 lncRNA downstream 320985 5121927 ~ 5122604 (-) True G97396
TU131235 lncRNA downstream 329931 5110394 ~ 5113658 (-) True G97393
XR_002650499.1 lncRNA upstream 36235 5486294 ~ 5487313 (-) True LOC111193398
XR_002650500.1 lncRNA upstream 47044 5497103 ~ 5501363 (-) True LOC111193399
TU131655 lncRNA upstream 90854 5540913 ~ 5573904 (-) False LOC103028279
TU131661 lncRNA upstream 128503 5578562 ~ 5586666 (-) False G97717
TU131681 lncRNA upstream 223280 5673339 ~ 5673728 (-) True G97734
XM_022674172.1 mRNA downstream 1813 5435548 ~ 5441776 (-) True LOC103038292
XM_022674168.1 mRNA downstream 25332 5411853 ~ 5418257 (-) True LOC103037217
XM_022674167.1 mRNA downstream 25335 5411853 ~ 5418254 (-) False LOC103037217
XM_022674166.1 mRNA downstream 32347 5395367 ~ 5411242 (-) True cops7a
XM_022674157.1 mRNA downstream 202084 5237976 ~ 5241505 (-) False LOC111193424
XM_022674174.1 mRNA upstream 8406 5458465 ~ 5462055 (-) True LOC111193428
XM_022674054.1 mRNA upstream 21390 5471449 ~ 5477136 (-) True LOC103027644
XM_022674040.1 mRNA upstream 28660 5478719 ~ 5491460 (-) True LOC111193391
XM_022674041.1 mRNA upstream 53029 5503088 ~ 5524610 (-) True setdb1
XM_022674175.1 mRNA upstream 94972 5545031 ~ 5573839 (-) True LOC103028279
trnas-aga_10 other downstream 350622 5092886 ~ 5092967 (-) True trnas-aga_10
XR_001518422.2 other downstream 1269382 4150003 ~ 4174207 (-) False LOC107197182
XR_002650512.1 other downstream 3172012 2270503 ~ 2271577 (-) True LOC111193410
TU129943 other downstream 3628671 1811838 ~ 1814918 (-) False LOC103031019
XR_002650509.1 other downstream 5011196 431659 ~ 432393 (-) True LOC111193405
TU131662 other upstream 128503 5578562 ~ 5586666 (-) True G97717
TU131666 other upstream 140939 5590998 ~ 5593483 (-) False riiad1
TU131741 other upstream 509262 5959321 ~ 6012419 (-) False LOC111193431
TU131744 other upstream 520790 5970849 ~ 6012419 (-) False LOC111193431
TU131761 other upstream 532876 5982935 ~ 6012784 (-) True LOC111193431

Expression Profile