LOC103029128 (LOC108432343)


Basic Information

Item Value
gene id LOC103029128
gene name LOC108432343
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 3665611 ~ 3702975 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU174767
CTCTGGCGGTTAGCCACAAACCGGCTCTGCTAAAACAGTTTACCatacataccataccatacatggcgccgactacaaaatgacgtCACGAATCATGGCGGGAAAGCTGAAATCCAAAGGGGAGAGCAGTTTGTTGAGGATTAGGATTAGATTTACTCTGGCGTTTCTATTGTTTCTCCTTCAGTTATTCCAGCTCTCATCAGGTGTTCCACGTAGCACAATTGATGTCAAGGATGAACAAGAAGTCAAAATCCATGAAGCGCAGCACTTCTGCTACATCAATCCGGTTCCAGATCCTGGGTGGAAAGAGACCTGGATGAGAATCCAGGGAAGATAACTGTGCATTTACTGGGGTTGAAACGATTCCCAATATCCTTAATTCAGTTCATCATGATTCAGTACTctgctgaaaaataaacaaCCTGGCCAGCTCAAGTTGATCATCTGGAGAAAACATACCCaatgctggttaaccagctggtcttgagctggatttttttagcAGGGCAAGCATGATCAACTTGACAAAGCTGGAAAAAGTACCACACATTAATATAGTAGCTCGAAATAAACATACCAGACGAGATACAGTAATTGGTACCTGTGTAGTGTTCGGGTAATCTAGTGtttattatacaaaaataaaatgttaatagaATTAATTTACCTTTAATGTAGTAATACCCTAATGATGCTTGATTTTCTCTTATGTTTTCTGGGTAATCTAATGCTTTCTGAATTACCCCACTGGTTATGTAACCATGACTAGataatttttttgtatgatttttatgtatttttctaaTTTGTTGATTTTCTAGGTTCAGGTTCGGAGTTCCAAGGAGCTGAAGGTTACCGTTGCTAGTGATGAAGAGAAGCTTGATGATCTTGAGCATTTCAGCATCTCAGACCTGGTGCAGTACTTCATACGAGAGCAGACTAATGAAACCACTGTGAGCGTCAGCCTCTTCAGCCCTAAAACATGTTTCCGGGTGGATCCTTCAGATTCCAGAACgttatatactgtaaaaccgAGCCGACAATTCGACATCTTACTGTTCTTGGTGTTTCTGGCCGGattgctgctgtttttctttgcagATACGCTCAGCAGGAGTCAGCTGTTCTACTACTCAACAGGACTGAGCACAGGTCTGACAGCTTCCCTCATTATCCTCATCTTCGTATTGGGGCGATTTTTGCCGAAGAAAAGTTCTTTCTATGTGCTGATAGTGGGAGGCTGGTCTTTTGCTCTGTACCTAATCCAACTAGTGTTTAAGAACCTGCAGGTCATCCTTAAAGAGTATTGGCACCTAGCAGCTGCCTATGTTGCAGTTGTCGGCTTCATTAGCTTTGCAGTGTGTTACCGTCATGGTCCGCTGGTAGAGGAGCGGAGTATCAACATCCTCTCCTGGACGTTGCAGTTATTTGGCATGTTGCTGATTTATGCTGGTATTCAGGTTCAGCAGGTGGCACTAGCGATTATGGTGGCTGCTTTCTGCTCTAAAAACCTGGAGTACCCAGTGACCATGGCCATCACCCTTT
>TU174772
cagttgttagTGATGAAGAGAAGCTTGATGATCTTGAGCATTTCAGCATCTCAGACCTGGTGCAGTACTTCATACGAGAGCAGACTAATGAAACCACTGTGAGCGTCAGCCTCTTCAGCCCTAAAACATGTTTCCGGGTGGATCCTTCAGATTCCAGAACgttatatactgtaaaaccgAGCCGACAATTCGACATCTTACTGTTCTTGGTGTTTCTGGCCGGattgctgctgtttttctttgcagATACGCTCAGCAGGAGTCAGCTGTTCTACTACTCAACAGGACTGAGCACAGGTCTGACAGCTTCCCTCATTATCCTCATCTTCGTATTGGGGCGATTTTTGCCGAAGAAAAGTTCTTTCTATGTGCTGATAGTGGGAGGCTGGTCTTTTGCTCTGTACCTAATCCAACTAGTGTTTAAGAACCTGCAGGTCATCCTTAAAGAGTATTGGCACCTAGCAGCTGCCTATGTTGCAGTTGTCGGCTTCATTAGCTTTGCAGTGTGTTACCGTCATGGTCCGCTGGTAGAGGAGCGGAGTATCAACATCCTCTCCTGGACGTTGCAGTTATTTGGCATGTTGCTGATTTATGCTGGTATTCAGGTTCAGCAGGTGGCACTAGCGATTATGGTGGCTGCTTTCTGCTCTAAAAACCTGGAGTACCCAGTGACCATGGCCATCACCCTTT
>XM_022676840.1
ggcgccgactacaaaatgacgtCACGAATCATGGCGGGAAAGCTGAAATCCAAAGGGGAGAGCAGTTTGTTGAGGATTAGGATTAGATTTACTCTGGCGTTTCTATTGTTTCTCCTTCAGTTATTCCAGCTCTCATCAGGTGTTCCACGTAGCACAATTGATGTCAAGGATGAACAAGAAGTCAAAATCCATGAAGCGCAGCACTTCTGCTACATCAATCCGGTTCCAGATCCTGGGTGGAAAGAGACCTGGATGAGAATCCAGGTTCAGGTTCGGAGTTCCAAGGAGCTGAAGGTTACCGTTGCTAGTGATGAAGAGAAGCTTGATGATCTTGAGCATTTCAGCATCTCAGACCTGGTGCAGTACTTCATACGAGAGCAGACTAATGAAACCACTGTGAGCGTCAGCCTCTTCAGCCCTAAAACATGTTTCCGGGTGGATCCTTCAGATTCCAGAACgttatatactgtaaaaccgAGCCGACAATTCGACATCTTACTGTTCTTGGTGTTTCTGGCCGGattgctgctgtttttctttgcagATACGCTCAGCAGGAGTCAGCTGTTCTACTACTCAACAGGACTGAGCACAGGTCTGACAGCTTCCCTCATTATCCTCATCTTCGTATTGGGGCGATTTTTGCCGAAGAAAAGTTCTTTCTATGTGCTGATAGTGGGAGGCTGGTCTTTTGCTCTGTACCTAATCCAACTAGTGTTTAAGAACCTGCAGGTCATCCTTAAAGAGTATTGGCACCTAGCAGCTGCCTATGTTGCAGTTGTCGGCTTCATTAGCTTTGCAGTGTGTTACCGTCATGGTCCGCTGGTAGAGGAGCGGAGTATCAACATCCTCTCCTGGACGTTGCAGTTATTTGGCATGTTGCTGATTTATGCTGGTATTCAGGTTCAGCAGGTGGCACTAGCGATTATGGTGGCTGCTTTCTGCTCTAAAAACCTGGAGTACCCAGTGACCATGGCCATCACCCTTTACCAGAAGTTGAAGCCAAAGCCGCGCTGCAGACCAGCACCTCGGCGTCAGTTAACAAAGAAGGAGTACTACCAACAAGCTGAAGAAGAGACAGCGAAAGCTCTGGAGGAACTGAGAAAGTACTGCAGCAATCCAGATTTCAACACACTGAAAACTGTGTGCGGACTGCAGTCTCCCAAGAGGTTTGCAGACTTCGTTGAGGGCTCTTCTCATCTGATCTCCAATGAAGTGTCGCTCCATGCTCAGGAGTACGGTTTAGGAGGGTCATTCTTCGAGGATGATCTGTTTGATACTGACGAGGAAGAAGGGTGGGAGACGGAGGGGGATCAGAAACCAAATATCAGCTCCTCGTGGAACAGCACACATAGAAAGAGCTGAAAAAAGAACCTGACTTTTCACTCTTTTTATGGAAGTGATGAGGTATGGAAGACAGCTCATGGATGTAATTTCTTTCTCCTAAGCAGCAGCCATTAGATTGCGTGGAGTCATATTTATGGATGAAGAGGCTCATGGAATTTGTTTTACTTGGGGAATATTGTGGATTGGTCCCACTGTACGActtgagttttttatttattacgtttttttttttaagttagcaATTTGAGAACCATAATTTACACGTTAGTCTCTTAAAATCAcgttaaactttattttaatattattcaaaaaaataaaatggaaatggATACATTTTTA
>XM_022676841.1
TCTAAAACGCAACAACCCAACAGCGCTGCAGTACTGGAGCGCTACAGACCTGCAGGTGgcgctgtgctgcaggatcgGTGAGACACAGCGGGGAGAATAAGAGCAGCTCAGTATCATGGCGGGACTGATGAAATTGAAAGGAGGGAGCAGTTTGTTGAGAATCAGGGAGAGATTTACTCTGATTTCTCTACTGTTTATCCTGCAGTTACTCCAGCTCTCATCGGGTGTTAAACGTAACACAATTGATGTCAAGGATGGACAAGAAGTTAAATTACGTGAACCGCAGCACTTCTGCTACATCAATCCGGTTCCAGTTCCTGGATGGAAGGAAACCTGGATGAGAATCCAGGTTCAGGTATGGAGCTCAAAAGAGCTGAAGGTTACAGTGGTTAACGATGAGGAGGACCTTGAGGAGCTCGAGCATTTCAGCATCTGGGGCCTGGTGCAGTACTTCGTCCGGGAGCGAACAAATGAAACCACTGTGAGCGTCAGCCTCTTCAGCCCTAAGACGTGTTTCCGGGTGGATCCTTCAGATTCCAGAACgttatatactgtaaaaccgAGCAGAAAATACGACATCTTCCTGTTCTTGGTGTTTATTGCTGGAGTTCTACTGTTCTTCTTTGCAGATACGCTCAGCAGGAGTCAGCTGTTCTACTACTCAGCAGGAATGAGTACAGGCCTCATAGCTTccctcatcatcctcatcttTGTCCTGGGCCGATTTTTGCCGAAGAAAAGCTCTTTCTATGTGCTGATAGTGGGAGGCTGGTCTTTTGCTCTGTACCTAATCCAACTAGTGTTTAAAAACCTGCAGGTCATCCTCAAAGAGCACTGGCACCTGGCCATAGCCTATGTTGCAGTTGTCGGCTTCGTCAGCTTTGCAGTGTGTTACCGTCATGGTCCGCTGGTAGAGGAGCGGAGTATCAACATCCTCTCCTGGACGTTGCAGTTATTTGGCATGTTGCTGATTTACGCTGGTATTCAGGTTCAGCAGGTGGCACTAGCGATTATGGTGGCTGCTTTCTGCTCTAAAAACCTGGAGTACCCAGTGACCATGGCCATCACTCTTTACCAGAAGTTGAAGCCAAAGCCGCGCTGCAGACCAGCACCTCGGCGTCAGTTAACAAAGAAGGAGTACTACCAACAAGCTGAAGAAGAGACAGCGAAAGCTCTGGAGGAACTGAGAAAGTACTGCAGCAATCCAGATTTCAACACACTGAAAACTGTGTGCGGACTGCAGTCTCCCAAGAGGTTTGCAGACTTCGTTGAGGGCTCTTCTCATCTGATCTCCAATGAAGTGTCGCTCCATGCTCAGGAGTACGGTTTAGGAGGGTCATTCTTCGAGGATGATCTGTTTGATACTGACGAGGAAGAAGGGTGGGAGACGGAGGGGGATCAGAAACCAAATATCAGCTCCTCGTGGAACAGCACACATAGAAAGAGCTGAAAAAAGAACCTGACTTTTCACTCTTTTTATGGAAGTGATGAGGTATGGAAGACAGCTCATGGATGTAATTTCTTTCTCCTAAGCAGCAGCCATTAGATTGCGTGGAGTCATATTTATGGATGAAGAGGCTCATGGAATTTGTTTTACTTGGGGAATATTGTGGATTGGTCCCACTGTACGActtgagttttttatttattacgtttttttttttaagttagcaATTTGAGAACCATAATTTACACGTTAGTCTCTTAAAATCAcgttaaactttattttaatattattcaaaaaaataaaatggaaatggATACATTTTTA

Function

NR:

description
PREDICTED: nuclear envelope integral membrane protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174767 False 1545 lncRNA 0.43 6 3668863 3673604
TU174772 False 690 TUCP 0.47 6 3668863 3702975
XM_022676840.1 False 1686 mRNA 0.45 10 3665611 3673540
XM_022676841.1 True 1771 mRNA 0.46 9 3665611 3684055

Neighbor

gene id symbol gene type direction distance location
pan2 pan2,LOC107756401,LOC107723747 coding downstream 22441 3621075 ~ 3643170 (-)
LOC103030607 LOC108432330,LOC108276274,LOC107756402,LOC107723745,LOC107549050 coding downstream 50877 3608304 ~ 3614734 (-)
trappc6b trappc6b,LOC107572779,LOC107756365 coding downstream 59738 3603120 ~ 3605873 (-)
tpx2 NA coding downstream 63894 3590682 ~ 3601717 (-)
cd63 NA coding downstream 100859 3537907 ~ 3564752 (-)
LOC111194054 LOC108434293,LOC105895779,LOC107573690,LOC103358197 coding upstream 13303 3716278 ~ 3721242 (-)
LOC103028287 LOC108410615,LOC107723767,LOC107756398,LOC107671895 coding upstream 37529 3740504 ~ 3744913 (-)
myb myb coding upstream 130862 3833837 ~ 3852165 (-)
rps12 rps12,LOC107671850 coding upstream 590832 4293807 ~ 4297904 (-)
sh3bgrl2 sh3bgrl2,LOC107549062 coding upstream 607390 4310365 ~ 4329344 (-)
LOC107197023 LOC108432878 non-coding downstream 182583 3382960 ~ 3483028 (-)
G129155 NA non-coding downstream 250453 3332089 ~ 3415158 (-)
G129154 dgka,LOC108276149,LOC107701752,LOC107756407,LOC106567181 non-coding downstream 331537 3329207 ~ 3334074 (-)
G129150 NA non-coding downstream 339928 3274602 ~ 3325683 (-)
G129048 NA non-coding downstream 609698 3046308 ~ 3055913 (-)
G129216 NA non-coding upstream 11528 3714503 ~ 3714727 (-)
G129220 NA non-coding upstream 26587 3729562 ~ 3730928 (-)
G129229 NA non-coding upstream 54160 3757135 ~ 3758471 (-)
G129228 NA non-coding upstream 55926 3758901 ~ 3759734 (-)
G129246 NA non-coding upstream 132026 3835001 ~ 3835389 (-)
LOC103031137 LOC107572773 other downstream 76696 3569978 ~ 3588915 (-)
G129147 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 412440 3250508 ~ 3253171 (-)
alkal2 fam150b other downstream 652344 2989985 ~ 3013267 (-)
G129018 acp1,LOC107707021 other downstream 681832 2827573 ~ 2983779 (-)
fbxo25 fbxo25,LOC107715015,LOC107593986,LOC107664196,LOC107697951,LOC107707022 other downstream 683011 2849304 ~ 2982600 (-)
G129260 hbs1l,LOC107756395,LOC107701737,LOC107723734 other upstream 161908 3864883 ~ 3895416 (-)
G129376 NA other upstream 850640 4553615 ~ 4593764 (-)
G129514 NA other upstream 1619721 5322696 ~ 5328697 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other upstream 1896298 5599273 ~ 5601455 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other upstream 2041018 5743993 ~ 5784566 (-)

Expression


Co-expression Network