LOC103042879 (LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637)


Basic Information

Item Value
gene id LOC103042879
gene name LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 5743993 ~ 5784566 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU175458
cccgagtgtacatatttatttaactatgaGTTTTGGTGAGTTGTAGCCTTTAAGGACACTGTGAGAGGAGGTCCTTCAGGGTAATGGCTATTATTAATCCTTGGCGCTGTTCCACTGTATGGTATCTACGCTAATCTACTCaactcaaaaacaaaacaaaacatttttttttttttttttccaatttatcGGGTGTTCTGGAAACTGCGCTGTACAGTCCAGCTAAAAACATGGACGGATGGCAACTGAAAACGTTGCTTAAAAAAGCTGGAAAAATGTGACCGTCCTTTTAGAGAAGGTGCTCCGTGTCCAACACTGGGATTTCAGTCTTGACTAACTGCATTGTGAGGGAAGACAGTAGAGGAAGTTCGACTAGTCAACTCcacttttatttatatctcttgtgttttactttaattttgttttattttctgaatttctgaatTTGCTCTTTGTGTGTAACAAACTTCTTCATACTCTTACGACTAAAACAcaggactgtgggaggagtagAGGAGCAATGTTAGATGTTAGATTCCACCTACTGGAACTGTACCACACTGGCGTTTAGAGCAAAAGGCCGGAGATTGCCCATTGCCTATGTTTTGGTTGTATGTTGATTAGACTTTTTTTCTGCTTATCAAACAATCTGCATTTCAAATCATGTTAGACACACACATCTTTTTGGGATTCATTGAAATtgta
>XM_022676897.1
cacacacacacacacacctttaacAGGCTGTCGGACTATGGCGTGTGCTCCCGTTCAGCTCGGCTCTGTTGTCAACATCTCCCCACAGATGCATTAATGCGGAGCGATGGGAATCTCGCAGTCATGGCTCTGGCACGAAGCGTCGTCTCCTGTTTGCTGGTGCTGGCGGGATTAATCGCACTGGGCGATGctctgaggtgTAACTGCACTAACTGTGAGAAGACTGGTTATGAGTGTGAGACGGATGGGGCCTGTATGGCCTCCACCTCCTACATTAAAGGAGAAGAGCAGCACGTCCGTATCTGTATCCCCCGCGACAACCTCATCCCACCCGGACAGCCCATCTACTGCCTGAGCACTGAGGGAGTGGtgaacacacactgctgctacacCGACTACTGCAACAGCGTCAACCTGCAGGTTCCTAATGGGGTTCCGGAGGACACGACCTGGCCGGGTTCGAGCAGCAGCTGGGGTCCGGTGGAACTGGTAGCGGTGATAGCAGGTCCGGTGTTCCTCGTCTGTCTCCTGCTGATCGTGGGAGTGTTCCTGTTCCAGCACCACCAGCGGGCCTACAACCACAGGCAACGGCTGGACGTCGAGGACCCGTCCTGCGACCACCTGTACCTGGCCAAGGACAAGACCCTGCAGGACCTCATCTTTGACCTGTCCACgtctggatctggatctgGTCTGCCGCTGTTTGTTCAGAGGACCGTGGCCAGAACCATCGTTCTGCAGGAGATCATTGGAAAAGGCCGTTTTGGGGAGGTGTGGAGAGGGAAGTGGAGAGGAGGGGACGTGGCTGTGAAGATTTTCTCCTCTAGAGAGGAGCGTTCCTGGTTCCGCGAGGCGGAAATCTACCAGACAATCATGCTGCGGCACGAGAACATCCTCGGCTTCATCGCTGCCGACAATAAAGATAACGGCACATGGACTCAGCTGTGGCTGGTGTCTGATTATCACGAGCACGGCTCTTTGTTTGACTATCTGAACCACTACTCCGTCACTATCGAAGGAATGATCAAATTATCTCTGTCAGCTGCCAGCGGACTCGCCCACCTGCACATGGAGATCCTGGGCACGCAGGGGAAGCCGGGGATCGCACATCGTGACCTCAAATCTAAAAACATCCTGGTGAAGAAGAACGGCACCTGCGCTATAGCTGACCTGGGTCTCGCTGTTCGACACGAGTCCGTCACCGACACCATCGACATCGCCCCCAATCAGCGGGTCGGAACTAAAAGATACATGGCTCCAGAGGTGCTGGATGAAACTATCAACATGAAGCATTTTGATTCGTTTAAATGTGCTGATATCTACGCTTTAGGACTGGTGTACTGGGAGATAGCGAGACGATGCAATGCTGGAGGAATCCATGAGGAGTACCAGCTGCCGTACTACGACCTGGTGCAGTCTGACCCCTCCATAGAGGAGATGAGGAAAGTGGTGTGTGACCAGAGACTACGGCCCAATGTGCCCAACTGGTGGCAGAGCTATGAGgctcTGCGGGTGATGGGGAAGATCATGCGGGAGTGCTGGTACGCTAACGGCGCGGCGCGGCTGACAGCCCTGCGCATTAAGAAGACTCTCTCTCAGCTCAGCGTGGAGGAGGACGTGAAGATGTGAGGCGCCAGCGGGGCCCCCACCCCCACAGagacgcacaaacacacaaacagagagcgagagagaggaaagagactCAACTAAACGTCTCCTGCCAGTTTCAGCCACAGTTTCAACGTTTTTTAAAGTTGTGACGAGGACTACCTCACCTTTTTAGCCAAAACTACTGAGAAAACAGGCCACTCCAGCCATCCATCACTCCATCCACCGGCTCCAAACCCTCCATCAGCGGTCCAGCCCTGTCCAGCTGCGCCCACCCGCCCTCAGCCCCACCTACACTCCACAGACTTCTgacgttttttattttgttttttatggcaGGAATGAATGAACTGTGTATGGTGTGAAGATTTTtgggtttgttttgttgttaattcttattattttgaccACTCAGCGAGATCGAGCCCTGCAGAGACGGTTCAGTAGAGTATGGGTGTGTGAGCATTAGAACTCTGGGGACTTTCCCTCAGCTCATATATAGTAAATAGTAGGTGTTACTCTCACTGCTGTCCCATTTTCATGAATGCAGGGAATTAATTTGAATTCATTTTAGGAGTAAATGTGAATTTAGTTGGAGAGGAAGTGGATTTTAATCATGGTTTTATGGTTTTGTTGTGACTAACATTCATATTGTCATCTTGTATTAAGATTGACTAAAATACACTGAGTTACTATATAcggcaaggttttttttttttttttttttttttttaagctcaaTCTTGTTTTACAgggattttagtgttttttttttttattttgttttttttttgccccgagtgtacatatttatttaactatgaGTTTTGGTGAGTTGTAGCCTTTAAGGACACTGTGAGAGGAGGTCCTTCAGGGTAATGGCTATTATTAATCCTTGGCGCTGTTCCACTGTATGGTATCTACGCTAATCTACTCaactcaaaaacaaaacaaaacaaaacatttttttttcttattattttttgcttttccaTTACGCAGATTTGGCTGGTATCACGAACCGGGTTCTTTTAAGTACCTGTTCGGTCATAGTGGCAAACAATTATGTGTACACCTTGTAGATTT

Function

NR:

description
PREDICTED: activin receptor type-1B-like isoform X1

GO: NA

KEGG:

id description
K13567 ACVR1B, ALK4; activin receptor type-1B

RNA

RNA id representative length rna type GC content exon number start site end site
TU175458 False 705 lncRNA 0.38 2 5743993 5746520
XM_022676897.1 True 2694 mRNA 0.50 9 5746230 5784566

Neighbor

gene id symbol gene type direction distance location
dnajc22 dnajc22 coding downstream 115032 5619884 ~ 5628961 (-)
ikzf4 ikzf4,si:dkey-166n8.9,LOC107563647 coding downstream 125954 5605924 ~ 5618039 (-)
wnt10b wnt10b,LOC108276208,LOC107570475,LOC107695810,LOC107745470 coding downstream 186844 5545322 ~ 5557149 (-)
LOC103039185 arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding downstream 204274 5531226 ~ 5539719 (-)
phf8 phf8,LOC107563633,LOC107745465,LOC107570386,LOC107681973 coding downstream 220814 5508893 ~ 5523179 (-)
LOC103041954 LOC103041954,LOC108433384,LOC108275854 coding upstream 10239 5794805 ~ 5822814 (-)
LOC103042474 LOC108433401 coding upstream 42120 5826686 ~ 5846857 (-)
LOC103042779 LOC103042779,LOC108432429,LOC108276147,LOC105897280,LOC103356902,LOC101169109,LOC108235199,LOC107681947,LOC104932563 coding upstream 252638 6037204 ~ 6040799 (-)
LOC103043708 NA coding upstream 327276 6111842 ~ 6153594 (-)
LOC103043500 znf385a,LOC108433446,LOC107708851,LOC107570601,LOC107681944,LOC107586538 coding upstream 478331 6262897 ~ 6443935 (-)
G129749 NA non-coding downstream 19369 5724160 ~ 5724624 (-)
G129738 NA non-coding downstream 61991 5680810 ~ 5682002 (-)
G129581 NA non-coding downstream 282241 5427352 ~ 5461752 (-)
G129574 NA non-coding downstream 393890 5344780 ~ 5350103 (-)
G129503 NA non-coding downstream 515201 5228045 ~ 5228792 (-)
G129762 NA non-coding upstream 21523 5806089 ~ 5806914 (-)
G129791 NA non-coding upstream 245452 6030018 ~ 6031834 (-)
G129795 NA non-coding upstream 290182 6074748 ~ 6111588 (-)
G129834 NA non-coding upstream 374702 6159268 ~ 6162299 (-)
G129843 NA non-coding upstream 406552 6191118 ~ 6193521 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other downstream 142538 5599273 ~ 5601455 (-)
G129514 NA other downstream 415296 5322696 ~ 5328697 (-)
G129376 NA other downstream 1150229 4553615 ~ 4593764 (-)
G129260 hbs1l,LOC107756395,LOC107701737,LOC107723734 other downstream 1848577 3864883 ~ 3895416 (-)
LOC103029128 LOC108432343 other downstream 2041018 3665611 ~ 3702975 (-)
LOC103044130 tac3 other upstream 410108 6194674 ~ 6201901 (-)
LOC111194060 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 other upstream 1254364 7038930 ~ 7056722 (-)
G130093 NA other upstream 1610373 7394939 ~ 7395791 (-)
ctnnbip1 ctnnbip1 other upstream 1951173 7735739 ~ 7790762 (-)
G130420 vwa5b1,LOC107664114,LOC107599492 other upstream 2752438 8537004 ~ 8537987 (-)

Expression


Co-expression Network