G129581


Basic Information

Item Value
gene id G129581
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 5427352 ~ 5461752 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU175272
tttAAATCAAtttttggGGGTTAGATCCCATCTAGAACATGCAAAAGTGTGTTTGAGTGGATTTTGGAGAATTAGCTAGGAGCTACAGTGAGGTTTGGACCTGTTGGTCtggatttttctctttttttttttttttgcatttatttgcgTGACGTTAGCTGATTACAGTATGCTGCCGGAATCAGAGAGCCGGTATTTAGAAATTGTAAAGCGCAGTATAGAAAGCTTTGGATTGTTGAGCCTCGGTAATTATTCATATACATCGCTTATAAGGTCAAAGCTTGCCAATGATGATGCGGTGGTGTTGAATGTCTGGTTTGCTGAAGGTTGTTTTTAGTTtccttttcctttccttttctttttaaagcttGCTTGAGTAACCAAGAGCCTGTGAAGGATCACGATCACAGTCGGGTACTTTGTGTCATCTCATTTATGttcagaattattattatttttatttttaattttttttgtgcattatccTCCCAGAATGGCTTCTGAGCAAGCCCATATTTCCTGATAATCAGGCAGGCACGTGGCTGTGTTTACAACATTTATGTTGGTTTGGGCTAACGCGAGACAGGCTAAGCCAATGGCtgctttttggttttgttttgggtgacgtttttttttttttttttttttctctctctctcttttcttaaaATCAGGACAtttcaatattaataattaatgacgaGTAGCTATATTGTGCTTAGTAGATTTGTCAGTGTGATGTAGGTCTGGAAAACCTGAAGCCTATTTGATTGATTGACTAGTGATGTCAATATCCTTTTATATATCATCGGATGGTAATTGGTTGATGATTcattgtgggaaaaaaaaagtctgggcAGTTGgtttttaattatgattattttttatggttttttTCACATCCATTAACaatcctgtttattttttaatttatttatttattgtttttccatttttgattaatttcatttaatttcatttgtttgCTTCTGACCTTGGTGTGAATGACAGCAAGTACAGGACAGAACCTTGAAAGTAAAGAATGAGCGTCTCTGGGGTTGCAGTGTGTATGaaacgtaaaataaaaaaaacaaacacgggTGGTCTGGCAAAATTCGTCGAGCCACGCCAGAATCACCTGCTCAGAATATCTTGAGGTCTGATTATGCATGAACAtgctctcccccccccccccccccccttaatcCCCAACTAAGAGACTTTTTTCAtaggttgtttaaaaaaaaaaaaagaaaagttatttATGGAAGGCCGTGTATGGAATGTACTGGATTTCCTTGCTGAAAGAATGAGCGTCAGAAtgcattaatttttattaattctaaCTATAACAGGTTTCTGTGAGGCAGggggcaacaaaaaaaatcacatcttCAATGTCTTCATGCTTAGTATTCATTGAGTGTCCTCCAATTCTAAAAAATCTTTTGAGTGCTTCTTTCTGAGCACTGAAAGTCTGATAAAAGGAAAGATCTGCTGCTTCCTTCTCTGTTCAGATAGCTAGAGCAATATCTGAAATTCCTTCGCAGGCGTTCCCGTGCGAGATTCCCGAAGGCTCCAGCGGAATAATGTTGGGAATGAAGAGTTTGGGATGATTAGAAGCTGCATTGAACTCAGTCAGCCTGTGCGCTTGGTTGATCTAGACTAGATTTGCTCTCCGAATCTGTGGAATCTGCACTAAAGCACATGAATATGAAGAGGGctgcttttctgtgtgtgtaaccCTAACCTTTCTTGGACTGCACCTTCTGGGCGGCTCGCTTTCGGAAGCAGGGACTTTGTCGTCACCGCCGCCGCCAAAAGAAAAGTGTAGGTGAAGGAGAACTGGTgctgttgataaaaaaaatacaagatataCAATGAAATCAGAGGGAGATGCAGTATTGCTGTTTAATTCATTGTTTAAGTATTGCTTTTAtggaattataataatttttttctttttaatttattttaatcctgctgCCCTATTCCCCTCCTCTTCATCCCCCTGCCTCATCCCAATCCATGTAGGCCGGGTTCCTGACAATGTACAAATATAACATGACATTGGGAGAGAATCACAGATTTaacatttgtatatttttgaggTTTCAGCAGAGAGAAAATACTTGATGCATTTACTAGAGGCTTAGTAATGCGGTAAATAAATAACGAATCACTGGggcttttattgtttatatatatttttcttttgttttcattaATGAATTTGAGCAGCTAGTGGTTTAGtgtaatgaaacaaaaatgcactaacttgttaaaaaaaatcttactgtTATGTAATGTGAAATCATATTAGAAGCATAAGATAATGATATTGATGTTGACAGGCTTGCAGAAATCTACGGGAATAGCATTCTCCTTAATGCTTGGGGTATTACTGTTAATTGACTTTAGGGGTGGTGTGGCAAAGGGAGGAATTCTTTAATAATGGATTGAAAGTGTGGGAGACACTAAATTCTAGCTGTCTGCATAAAAATgtcacaaaaagaaaataaattattttgttttggccTTAGAGTTtcgcttcattttttttgttgcagtcaTCTTGATTTACATTTACTAACAGTTTGCCTTTTGACTGTTAAATTTGCTTTTACATGTTAGGATTTGTATGTTttcaaatgcattaaaacaccAGTGTGActcatctctttttctttttttttttctttcatttataaATTTGAGACTTTTACACTGAGTAAATTCATACTGTTAGACAGGCTTATACATAAAGGCATTCCTGGTTAAAGTACAGGACAGAAAAGATGTGTCCTGATTCAGTTCCTGTTAATTTTCTGAAGTTACCTTATTGGAAAGAAAATCAATAACATATTTAGCGTTGTTGCTATGTTAAATTAGGCAAATAAATTTGACTGTATTATAATGTTGTTTACTCagtctttattttcttctgtaatTAACCTACCAAAATGGATTTTGGAGATCTTTTTGCTTCTGGCCAACAACATATATAGTGTTTAGATTTACtggttgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175272 True 3028 lncRNA 0.36 2 5427352 5461752

Neighbor

gene id symbol gene type direction distance location
asb8 asb8,LOC107745463,LOC107681993,LOC107570421,LOC103141183,LOC107563629 coding downstream 2131 5416853 ~ 5425221 (-)
atf7 atf7,LOC107563644,LOC107716199,LOC107695816 coding downstream 16578 5351606 ~ 5410774 (-)
LOC103043672 dip2ba,LOC108433219,LOC107745461,LOC107687534,LOC108275871 coding downstream 86859 5243018 ~ 5340493 (-)
LOC103039653 scn8aa,LOC108433193,LOC100304804 coding downstream 202701 5121999 ~ 5224651 (-)
LOC103038301 fignl2 coding downstream 403562 4989760 ~ 5023790 (-)
LOC103038352 pfkma,LOC103038352,LOC108433267,LOC108276103,LOC107745467,LOC107681974,LOC107563631,LOC107695813,LOC107716200 coding upstream 14762 5476514 ~ 5493287 (-)
troap NA coding upstream 33674 5495426 ~ 5507915 (-)
phf8 phf8,LOC107563633,LOC107745465,LOC107570386,LOC107681973 coding upstream 47141 5508893 ~ 5523179 (-)
LOC103039185 arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding upstream 69474 5531226 ~ 5539719 (-)
wnt10b wnt10b,LOC108276208,LOC107570475,LOC107695810,LOC107745470 coding upstream 83570 5545322 ~ 5557149 (-)
G129574 NA non-coding downstream 77249 5344780 ~ 5350103 (-)
G129503 NA non-coding downstream 198560 5228045 ~ 5228792 (-)
G129451 NA non-coding downstream 317315 5109631 ~ 5110037 (-)
G129439 NA non-coding downstream 348497 5065010 ~ 5078855 (-)
G129432 NA non-coding downstream 442137 4985010 ~ 4985215 (-)
G129738 NA non-coding upstream 219058 5680810 ~ 5682002 (-)
G129749 NA non-coding upstream 262408 5724160 ~ 5724624 (-)
G129762 NA non-coding upstream 344337 5806089 ~ 5806914 (-)
G129791 NA non-coding upstream 568266 6030018 ~ 6031834 (-)
G129795 NA non-coding upstream 612996 6074748 ~ 6111588 (-)
G129514 NA other downstream 98655 5322696 ~ 5328697 (-)
G129376 NA other downstream 833588 4553615 ~ 4593764 (-)
G129260 hbs1l,LOC107756395,LOC107701737,LOC107723734 other downstream 1531936 3864883 ~ 3895416 (-)
LOC103029128 LOC108432343 other downstream 1724377 3665611 ~ 3702975 (-)
LOC103031137 LOC107572773 other downstream 1838437 3569978 ~ 3588915 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other upstream 137521 5599273 ~ 5601455 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other upstream 282241 5743993 ~ 5784566 (-)
LOC103044130 tac3 other upstream 732922 6194674 ~ 6201901 (-)
LOC111194060 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 other upstream 1577178 7038930 ~ 7056722 (-)
G130093 NA other upstream 1933187 7394939 ~ 7395791 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021731 NA non-coding NC_007134.7 CM002907.2 27508867 ~ 27516273 (+)
grasscarp (Ctenopharyngodon idella) G18929 NA non-coding CI01000001 null 10437326 ~ 10440371 (+)
grasscarp (Ctenopharyngodon idella) G261006 NA non-coding CI01000062 null 4165382 ~ 4166002 (+)
striped catfish (Pangasianodon hypophthalmus) G250274 NA non-coding NC_047610.1 CM018556.1 6387726 ~ 6407587 (-)