wnt10b (wnt10b,LOC108276208,LOC107570475,LOC107695810,LOC107745470)


Basic Information

Item Value
gene id wnt10b
gene name wnt10b,LOC108276208,LOC107570475,LOC107695810,LOC107745470
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 5545322 ~ 5557149 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246745.3
cctctctctcctccgaGCCGCGAGCGCCGTGCACTCGGTCCGTCCTCATCCAGCGCGCGCGCACAAAATCCAAAAACACCCAGTTTTAATGTCGAGTCGCGCAAAACGCTTTTCGAGATGGAAACGTCGCGCAAACGTCGCCCGGGACGAGTCCTGATTCTAGCAGCAGCACTTCTGTCACCTGCCCTCACgGTGTTGTGTAATGACATCCTCGGTCTAAAGGTGGCAGGAGAGCCAGTTCTGACCCCCAACGCTGTGTGCTTAAAGCTTGCAGGCCTTTCTAAAAGGCAAATGCGGCTATGTGTGCGCAGCCCCGATGTCACAGCATCAGCCCTGCAGGGCATTCAAGTGGCCATTCATGAATGCCAGCACCAGCTCAGAGACCAGCGCTGGAACTGCTCCACACTGGAGAACCATGGCAAAGTGCCGCACCAGAGCGCCATACTCAACAGGGGTTTCAGAGAAAGTGCCTTCTCCCTGGCTCTGCTGGCTGCTGGTGTGGCTCACTCTGTGGCCTCCGCCTGCAGCATGGGCAAGCTGCGAGGCTGTGGCTGCGAAGCTAAACGTCGTTTGGATGACGACAAAATCCGAGTGAAGCTCGGccagctgcagctgcagacTCTGCAGAAGAGCGGGGTGAGCATTGTGGGAGCCGGCGGGCGCATGCCTGAGATCAGCCCAAACCACAGTGGCCTGCCCGCTTACCTACGCTCTGCTCACCCTGCCACCATCCTCAAACCCCTGCCTGAGGGCGTGACCTCCCTGCAGGAGACGTGGGAGTGGGGAGGGTGTAATCACGATGCCCGCTTTGGAGTCCGCTTCTCCAGAGACTGGCTGGACTCCAGAGGATCTTCCCGGGACATACACGCCCGAATGAAGATGCACAACAACAGAGTTGGCAGGCAGATAGtgactgacaacatgaagcGGAAGTGCAAGTGCCACGGCACCTCCGGCAGCTGCCAGTTTAAGACGTGCTGGTACGTGTCCCCTGAGTTCCGGCTGGTGGGCTCCCTGCTGCGGCAGAAGTTCCTGTCCGCTGTCTTCATCAACTCCCAGAACAAGAACAGCGGCGTGTTTAACCCGCGGGTACTGTCTGGGCAGGAGGGGGCGGAGCCTGCCAGGGCCCGGCGCCGCAGCCTCTCCAGGGAGCTGGTTTACTTTGAGAAATCGCCGGACTTCTGCGAACGCGAGCCGTCCGTGGACTCACCGGGGACTCAGGGCCGCATTTGCAACAAGAGCAGCCCGGCCATGGACGGCTGTGGCTCGCTGTGCTGCGGCCGCGGACACAACATCCTAAAGCAGACCAGAAGCGAGCGCTGCCACTGCCGCTTCCACTGGTGCTGCTATGTGCTGTGTGATGAGTGCAGGGTCACCGAGTGGGTCAACGTGTGCAAGTGAGCGGCCCAAGACTTTTCTCGGGCCAGAAACTCTTCAGGGGATAATCAGGGGGCAAGAGACATTAGCCAGAACCTCTCACGCCAAGAGTGCGAGTGTTAGGCTTCCAGTCTTACTCTTCCGCAGCTTCGGCCCAGCCACTTCTCCAATCGGCCCCCTCATCTGGGACGCATTTGCTTTGTGTGGCGGTTGTTATTCTCCCAATGCCAAGTCAGAGATTGAGGAGAGGAGTGACTCATGTCATTTGTCTTTGTTTCCCCTGTTTGGACTCTTCAGCCATGAAAATGCCCCGAACGCCATCTGTGTTCTTCACAATAACAAGGCGCAACAGCAGGAACGTATTATTGTCGAAAAAGCAAAGGCACTGCCACCACATACAGTTCTGTGTGTACATTTGAAAATGTGCGCTTAATGAAGCCGTGGCAAATCTTTTGCGAGTTTTTCTCTACTCTTTTAGATGTCAAAACCGATGCCATAAGCCGGGCCGTTTTGTAGGGAATGGAGGGAAACTGAAACAGAGGACAGAGGATGTGCCTTTGCCCGTTGGTTGGAGTTAATGTAAACCAGAGCGTTTGTGAATGTGAATATAGTGCGCTGGCTTTTCGAACCTGTACAGACGAGGACCACAgcggaggaaagaaaaaaaaacaaagactggaGAAAGACTGGAGAATACTTCTGCCTCCCTCAAGTCCTTTCACCAATCTGATTCGAAACAGTCACGTTTGATCTCACTTGGAATCCACTGTACTGCATTTTAAGAcgaaactgttaaaaaaaaaactgttcaaaaAACAGCAATGAAGGAATGACGTGGACTCACTCATGGACCTTTTAAAATCTGAAtgaaactgtttttacatttagtaaATTGAAGTAATGATAATCAATTTACATGACACTGAGACTgagatatgtattttttttttcatttttatttgtataaatgtatgttGTTTAGtgaaacaaatgaaatataatGTTATAGAAATTCTCTTTTCGAGAGATTTGTTTGTGCCAGACCGTCCATGAAATCAGTCTGCAGGACACCCTTTTTCCAGAAGCTTTGCTAGTCTGTTTACAGTGGCTTTAGAACAAAGCAAGTGTCTGGAGTGGTAAGATGAGGGATAAACTGGGGAATGAATGTAAGTACCCTGCGGAAAGTGCCTGGAAGAGAGGCAGGCTGGATGCGGTTTCCTATGAGACAGATTTTACAAGAGAGGATGGAATTGCGGAAAGGAGTGATACCAGTCTTAGTGGGATCAGCTGTACAAAGTTGACAGCCAGTTTGAGACGACCCCGCGCGCTGCCGAGGACAGTTTGTCCTTGTCTGCGCATCTGCCACTGAAGAAGGCTCGACTGATGTGTGCTAACTCGACACAGACGCGGCTAATGTTGACTGTGCCGGGGAGATTACTGAAGAAATGTAATCTGTTACTGATGAAAAATTACTCGACTAAAAGTGCAGCCAGTAAAGCAATCTTCTAATTTACATAAAGTGTGTAAAATTACTGATCCtagacatattttatatatatttttttattattacataaaaatatatttctttctcaCAATTAAGTCATCATTACAGATACCATCATTGTTCACAGCTATTGTGCACCACAAATAATAGAAACATTCAGTAAATTAAGGTTTGGTAGGCTGTGTCCAGCCAAAATCTGGATTTCTAGATTGTTGgaatatctagattgtatccagattcaGTTTATagtctgaacagcaaaaaaaaacacaagaaatcaGATTTCTTTTGCAAAAATCTGATCCAAACCACATTTGCATGTGGTTTGAAATGCAATTACAATTGGATTTGTACAGTTTAATCTTAGTCTAGACACACTGGCTGCTCAAATCGGTTTTAGAAATGTCTTCTCTTTGACCTACAATGGGATAAATACACCAATAATATGAAATCCAAAGTGTTGGAAATGCAGCAATCCAACAGTGTGAATACATGGATCCAGATACAATCTATTTGACAGATACAGTCAAATACAGTCTATATTTTTACAGCAGGAATCCATGTACTGTAGATAGCTTTGTGAAATCTGATCTAATATCTTtatcacagtgtaaacagtcATTCAGACAGATGTGATTTGAGAAGCAAATCTGATTtccctgcagtctgaacacagacatagaccttttaaaaagtctaaataaaagacaaaaacaaatctACTTTTAATGTACATACTCAGGAATATGAAAATCAAAAACTAAGCATTTTAACAGATGGTTAGAGTGTGATATGGTGGTACAGGTACTAAAAACAGAAGAGAGGTCCCAGCACAAAGATAAAGATTTATTATTGCAGTAATAAGCAGTTTAATATTGCACTGCAATAGATTTTGATTTGGCTTTTATAACAAaagcaaaaatgaaaatgtgtttaaatttgATTGATTGGCAGGGGAAATGCAAATGCCCTGCCTTAAAAGTATTATGTGTAGGGGGGttctgtactttttaaaataaactttaaatactCAGGTTAAGTTCAAACCTTGCAGATTAATCCCAAAAATCACAGGTACTTAAAGATGATCTTTTATCTctgtctaaaaaaatataataaacatataaattgGA

Function

symbol description
wnt10b Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within midbrain-hindbrain boundary development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in central nervous system; neural plate; neural rod; and neural tube. Human ortholog(s) of this gene implicated in obesity; split hand-foot malformation 6; and tooth agenesis. Orthologous to human WNT10B (Wnt family member 10B).

NR:

description
protein Wnt-10b-like

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG:

id description
K01357 WNT10; wingless-type MMTV integration site family, member 10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246745.3 True 4017 mRNA 0.46 4 5545322 5557149

Neighbor

gene id symbol gene type direction distance location
LOC103039185 arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding downstream 5603 5531226 ~ 5539719 (-)
phf8 phf8,LOC107563633,LOC107745465,LOC107570386,LOC107681973 coding downstream 22143 5508893 ~ 5523179 (-)
troap NA coding downstream 37407 5495426 ~ 5507915 (-)
LOC103038352 pfkma,LOC103038352,LOC108433267,LOC108276103,LOC107745467,LOC107681974,LOC107563631,LOC107695813,LOC107716200 coding downstream 52035 5476514 ~ 5493287 (-)
LOC103041955 NA coding downstream 71125 5456805 ~ 5474197 (-)
ikzf4 ikzf4,si:dkey-166n8.9,LOC107563647 coding upstream 48775 5605924 ~ 5618039 (-)
dnajc22 dnajc22 coding upstream 62735 5619884 ~ 5628961 (-)
LOC103041954 LOC103041954,LOC108433384,LOC108275854 coding upstream 237656 5794805 ~ 5822814 (-)
LOC103042474 LOC108433401 coding upstream 269537 5826686 ~ 5846857 (-)
LOC103042779 LOC103042779,LOC108432429,LOC108276147,LOC105897280,LOC103356902,LOC101169109,LOC108235199,LOC107681947,LOC104932563 coding upstream 480055 6037204 ~ 6040799 (-)
G129581 NA non-coding downstream 83570 5427352 ~ 5461752 (-)
G129574 NA non-coding downstream 195219 5344780 ~ 5350103 (-)
G129503 NA non-coding downstream 316530 5228045 ~ 5228792 (-)
G129451 NA non-coding downstream 435285 5109631 ~ 5110037 (-)
G129439 NA non-coding downstream 466467 5065010 ~ 5078855 (-)
G129738 NA non-coding upstream 123661 5680810 ~ 5682002 (-)
G129749 NA non-coding upstream 167011 5724160 ~ 5724624 (-)
G129762 NA non-coding upstream 248940 5806089 ~ 5806914 (-)
G129791 NA non-coding upstream 472869 6030018 ~ 6031834 (-)
G129795 NA non-coding upstream 517599 6074748 ~ 6111588 (-)
G129514 NA other downstream 216625 5322696 ~ 5328697 (-)
G129376 NA other downstream 951558 4553615 ~ 4593764 (-)
G129260 hbs1l,LOC107756395,LOC107701737,LOC107723734 other downstream 1649906 3864883 ~ 3895416 (-)
LOC103029128 LOC108432343 other downstream 1842347 3665611 ~ 3702975 (-)
LOC103031137 LOC107572773 other downstream 1956407 3569978 ~ 3588915 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other upstream 42124 5599273 ~ 5601455 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other upstream 186844 5743993 ~ 5784566 (-)
LOC103044130 tac3 other upstream 637525 6194674 ~ 6201901 (-)
LOC111194060 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 other upstream 1481781 7038930 ~ 7056722 (-)
G130093 NA other upstream 1837790 7394939 ~ 7395791 (-)

Expression


Co-expression Network