phf8 (phf8,LOC107563633,LOC107745465,LOC107570386,LOC107681973)


Basic Information

Item Value
gene id phf8
gene name phf8,LOC107563633,LOC107745465,LOC107570386,LOC107681973
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 5508893 ~ 5523179 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015605193.2
ATCCGAAATGTAGCTGAGCTGATCCTGTTCCTCCTGCTGCAGACAGTGGTCGCTGCTCGGGATTGTTGACATGGACAGCCTCCGCCGCCTGTGTTTATGTCTGGAATTGAGCAgagttgtttatttttgcttctTCTGAGAGGATCTGTGTGGTGTTTTTGCGTGCATTTCCCACTGAGGCGTGTTTCTGAGTGATCAAAAACTGCAGAAACAATGCAAACACCAGAGCTGGAGAGCAGCTTAGTGTTTCTGAAGTAGGCCTCACGAAACCTCGGACTTTCCCTGGGACTCCGACCGGTATGACTCTCCTGGGCCTCGTTCGAGAGGCGGCACTCTGAGCTCGGTGTCAAATCATGGCCCCTGCTTGCTTCAGAGTTTGCGTTTGACTGTAGAGGTGAAGGAAGCCTTGCTTTGTGCAATCGTACCTGCCATCATCTTTCACTGTCAAACATATTGCAGTGACTGTGACTGTCGGATTAAATCTGACTCTGCCCACAAATCCACAATGGCGTCTGTTCCAGTGTACTGCTTGTGCCGTCTCCCTTACGATGTCACAAGGTTCATGATTGAGTGTGATGTTTGTCAGGACTGGTTTCATGGAAGTTGTGTTGGAGTGGAAGAAGACAAGGCAGCAGATATTGACCTGTATCACTGCCCGAACTGTCAGGTCACACATGGACCCTCTGTCATGCGTAAACGACGCGGGAGCTCTAAGCAGGCTGATACTGCAGCCAGTACACGAGAGTCAGGGCGGCCTGTAAAGACTGGGAGCGCCCAGTTTGTTCGAGAGTTGCGCAGTCGGACCTTTCCAAGTGCTGATGAAGTCCTGCTGAAGCCAACAGGAGCCCAGCTCACAGTTGACTTTCTAGAGGAGCGCTCCTTCAGTGTCCCGGTTTTGGTTTTGAGGCGGGATGGCCTGGGCATGAGCCTGCCCCCTTCATCCTTCTCTGTGTCAGATATTGAGCACTATATCGGAGCTGAAAAGGAAATTGATGTGATTGATGTGGTCCGTCAGGCAGACCTAAAAATGAAACTTGGGGATTTCGCTACATACTATAACAGCCCCAATCGAGACAGAGTGCTCAATGTGATAAGCCTGGAGTTTTCAGATACAAGGTTGTCTAACCTGGTAGAGACACCAAAGATTGTGAGGAAATTGTCTTGGGTGGAAAACCTCTGGCCCGAGGAGTCTGTGTTTGAACGGCCAAACGTACAGAAGTACTGCCTAATGGGGGTGAAGGACAGCTACACAGACTTCCACATTGATTTTGGGGGAACCTCTGTGTGGTACCATGTGTTGCGGGGCGAAAAGATCTTCTACCTTATTCGTCCAACACCTGCGAACCTGTCTCTGTTTGAGCGCTGGAGCTCCTCCTCCAATCAGAATGAGCTTTTCTTTGGGGACCAAGTGGACATGTGCTATAAGTGTTCAGTCAAGCAAGGAAACACTCTGTTTATCCCTACAGGTTGGATCCATGCAGTTCTCACTCCTGTTGACTGCCTGGCTTTTGGTGGAAATTTTCTTCACAGCCTCAATATTGACATGCAGCTTAGGGCTTATGAAATAGAGAAGAGACTCAGCACAGCAGATCTGTTTAAGTTTCCTAACTTTGAGACAGTATGCTGGTATGTTGGCAAGCACATTCTTGACACATTCAGAGGTCTGAGGGAAAATCGTCGGCATCCTGCTTCTTACCTGGTTAATGGAGCCAAGGCTCTTAACAATGCCTTCCGAAGTTGGACACGCAAAGAGTCCTTGGCTGAACATGAGGATGAGATCCCAGAGACAATAAAGACACAGCAGCTGGTGAAGGATCTGGCTAAAGAGATACGGCTTGTGGAGGATATCTTCCAGCAGAATATCGGCAGAAGTGGGGCTCCTTTCGGTGGCTCACAAGGCCTCCCTTCTCCTCACCCCAAAGCCCCATTAACTACTCCTCTCAACTCCGGCAGACCCCCAGGTAAAAAGAGGGGCCCGAAACCAAAGGAGGCGGCTGGAGGAGGGGGTGTAGGCCCTCCTGGGCCCAAGAAAAAGGGACAGAAAGTTAAGGAGATGAAGACCGAAGCTGGGGAGCTGGATATGCTTGAGATTCATACTAAACACACCCTCAAGAAGTTCCAGCCAGGAAATAAAACCAAGAACAAGAACAAAATGGACCTGCCTGGTGCCTGTCTAGATGGCTTTGaagggaaaataaataaaagcaagcTCAAGCTGGTTCTGACCAATGGCAAAATACAAGGGAAGAAGGCGGGGCGCTCCAGCAATGCTAATGGAGCTGGACGCACTGCTCAGTTTCAGCCTCTAACAAGCAGCTCAGCTCTTTCAGACTTCGATTCAGATGATGAGCTTCAGATTGATGAAAGCCCTCCTCCACGGCGGAGGCCAGCTGTACCCAGCAAAAAGAAGCTGGCTGGCCTTCCTAGGAAACTGCCTCGGGCAAAACCATGCACTGACCCACACAGAGTCAGAGAGCCAGGGGAGGTGGACTTTGATATTGAGGAGGACTACACCACAGATGAAGAGATGCTCACTGTTCAAGGGGTGAAGGGGGGagcaggaggaattctggactTACTCAAAGCCAGCAAACAGGTGGCTGGCCTGGACCCGGCACTCAGCGAGGAAGCTCCAGCCTCTCCCAGCACCCGTGATGCCATCCAAGGCATGCTGTCCATGGCTAATCCCCCTTCTTcgtcatcctcctcctcttcctcctcctcgtcATCTTcgtcttcttcctcttcctctcctctctctatgTCTGGAGGAGGAGTGGGGATGAGAGTCATCAATGAAAAGGGCAGGAGAGCTGCATGGGTGAGCGGTGCTCAGAAGAAGGGTGAGAAGAAAGCTCCCATTCAGAGGCCTGGAAAACGGCCCATCAAAAGGCCTGCCAAACACCTGAGTGAAGAGGAGAGCCCTGATGAGCAGGAGACGCTGGGCACCTGTTTTAAAGACTCTGAGTATGtgtacccTTCGTTGGAGTCAGATGAGGAGGACCATTCCATGAAGGCCAagatgaagaggaagaggaactGGGATGATACACCATGGAGCCCAAAAGctCGTGTAACCCCAACCCTGCCTAAGCAGGAGCGACCAGTCAGGGAAGGTGTCAGAGTGGCCTCAGTAGAGACTGGGCTCGCTGCTGCCGCTGCCAAACTGGCACAGCAGGAACAACAGAAGACCATAACCAagagaaaatacacaaaaaagaaGGTCCCTCAAGAGAAGGCCCAAGCAGCAGCTGCATCACAACTTCAACTACCGGCAGACTCCAGCCCGCTGTCCCCCTCACTGCCTCCTGAACCTTCAGTGGACTGTAttgcagaggagaggagagtGGAGGCCTACTCCGCCAGCCTGCTGGATCACGAGTACACAGCCGGACCCTTTGGCCCAGGTGGACCGAGAGGAAGTGCTGCCATGGCCCCAGGGGTGTTCCTCACCTCCAGGCGACCCTCTCTTTCACCCCAGAACAGCAGCAATTACTCCCCTTCTACACCCTCACCTGCTGGGCTGGCAAGTCCTGGGTCTGCTGGTGCAGGACAAGGGAAGCGTCCAAAGAAAGGTCTTGCCACAGCTAAACAGAGACTGGGAAAGATTCTGAAAATCCACCGCAATGGCAAGCTTCTTTTGTGAGAGGACACTGGAAAAAGAGAGTGATGTGTGGGGAAGAAATGAGGCATAGGAGAACGGAAGAGGACAGTAAAAGAGGACAGAATGACTGTAAAAGATGGGAGAAAAAGGACACTGTGTGACTGAATGTGAGAGAACAAAGGACGGCATGGCTGATTTTACTATTGTGATTGTGACTTTTTCATGTACAATGTGCTATTCATCATTTTAAGCTCAATACCTCCTTTTTAGCATGCTTTTTtattactcatttatttaaCGTCATTTTAGTCATCAGTTTCTCTTTGTTAATCTGTTATTACATACTTTTTTGCTTGTTGTAATACTATAACTAAAAAGTGCAAAGCACTTAAGAGGTTTGTGTGGAAATGGCTTCAGTCTTCATTactgtaaagttactgttttggcTGTGTAATTGGTATGTGTACTAATTTGGCCCCTACAGTTAGTTGCAGTAAAATGGAAAGCCCTGTTATTTCTAGAGTACCAGTGGTTCAGTTTCTAGATGATTAACTCCTGGACCGAGAGTCATAGTTCAGTGGAGTTTGCAGAAAGGAGAGGTgtgttgtaaatgtgtgtgcAGCATTTTCTTGTAGCGTTTAAAGTCGAATAATAGAAATATAATGAGGCAAGACTTGCAGCTCTTTTCCTTTGCATGTAACACAAATATCCAATCTTCCACAGGGGAGTTGTACTGACTTCAGATAACTTTTGAGGATCGATCTTATGGTTTGATTGAGTTCGTCAGGACTGAAACTGAAGTAATGAAGCCTAAAGCTGAATTGGGACTGTTCACAAATGTAATGCAAAGCTGTCCCTCAAACGGtaaagcaaaagaaaagaaatcatTCGTCATTTCATGGAATCCACAAAAGCAATGCTGCTCAATTAAATTATGTTTACCAGGGGAAGCTAAAACGGTATCAAAGGAGCCTGTTTGTATCTGGATATGGCCAAGCCACATAAAAATACAAGTGCAAACGCACCCAAGCTCCATCTGTCACGTCACTTTAGCAGgtgatctgagacacatttggTATTACACAGGTattatagcagtgtaaacacatcaATATCTCCAAATTGCAACAGACAGCGAAAACTCCTCCCCATATTCATGATAAACAACTGGTTgctgtgcaaaacagaagccaTATTTCAGAAACACATTTAACTCCCATTTAAAACTACAATTAAGGCATTACGTACAAGGTCATTCCTATTTCAGAGGAGGATCTATATATtgttaggagtctagcccaaggactcttTTTGGTGTAGCAAAGCATTTAGTCACCCAGaactggaattgaaccccagtcttccACATGATGTGATGTGGTGTCttactggcaggtagtggtgttatccactgcaccacaccaaccacctacCAAGTGTAAGTGCATGTGTTTTAAAATCCAATCAAGATAAAATCCAGATATATGTGGAACATGTCACCaggtgtaaacaagatccatgatttttgtttttagtttttttttatactagcTTCATAGCCTTGATTTGTTTGTAATGTTGAAACTTGATTTTAGGTTAAATACACCTATGAgtacctgtttacacctggtcacttcatgtaaCCAGTATCTGGATTGGATTCTAATGTGATTTAAtctacattcatttatacatgGTAGTCAAACGTGTCTCTGGTTAATCAGACTGCAGTGTGGGATGGTTTAGGCAGTTATAACTGGTGTCTACTTGGAGAGActgatgtgtttacactgcCATAATGTGGATCAAATGCTCATATGAATCTCATATCACCCCTTCAAGTGGTCTGAGTGAATGGATTcgtatctgtttttaaaaaatcctgGGTGTGTTCACACTTGCATGTTTAGGTGGCTTAAacttatccagatataatcctaaTACTCAATATGCATGAATTGACCACAGGGTCTTTTACACATAAgttaacatgctaacatgttaACTTTTAGTAAAATTCTGCAAGAAAGTATGAAAGTTTATGCTTTTGATGTTGACTCTTGGTCCGAACAGACAGTTAAGAAGCAGGCAGTTCTGCTAACAGGATCTATGTCTGATGTAGGTCTTTATCATAGTCACTcacatatatattcataaatacGTACATGCATATTTCACTGTGAATGCTTTTTTTGGCCAGCGCGATCGTGCTTTACCGTGTGGTCAGTGCTCCTAAAACAGTTAAATCAGTAGTAATGAAGTACTGATAGTGATGCTTGTTTGCAGGTTATCTTAAGAAGTGTAAACAGGAAATGGAACTGTACCCTCAGCACCTTGGTCTGCTCTAGGTCTGCTATAGCGAGTGCCCATTCATCACTGTTtgctttaatgttttgttgttgttgttttttttttatcatagtcATATGATGTATTTCTACTGATTAACATGTTCCAGCTCTGTAAATATCCATTTTTAGTCACTCGGCACGGTCAGACGGTAGGATGTCTCGATGTTGTCTTGCTCTGTTTCCCGTTTGCctccatttatttgtttaaatgtagtTTTCTGCCGGCTGATTTCAGCAGGAGTGGTGTGGTACCTTTTGTAGTAAAACGGTAATGCATCTAAAATGGAATTAGTGTGTAGTGTCATGACAGATTCTGGTGGGGGAGTGTTAAAATTTAGTGTACATAATTGGTGTAATTTTGTTATAGCGACACGGAAAGGTTTGTTGCATTTGAATCTTTCTAAACATACCTTGTACAAAGATTACCTTAATGTTTTGGGAAATGTGAGAGTTTAACAGCAAGCTGTTTAGacctttttatttgtatagggtaaatatgttattttttggTTGATGTTTTATGACATTGGTAAGGTGATAATGAAGTTAATGTATTCTATAGTTTTTCCagtttattattgttcattatctGCTTTACCCCTCACTGATATAAACTGTTgagatattttagtttttttaatattcattcTAGAGGGGTTGAATATGTTCTTATTAAATCTGAATTCAGATTGGCtagtatgacaaaaataacaataacaagtGTAAACGtttcttttttgtgtaattGGCCTCACCAAATGTCTGACTTTGATCAAGCGAGCAATGTTAACatgacataaaaatatatttatgaagaaaaaagtagaaaactaaaacccaaaaaatatatgtttggtCATTCGAGTCAATCTGAGAATAAGGTGTGCTTCTCTTCTGCCCTTTAAGACCAATTAAACCCTATTGAATTTTAGTTTTTGGCTTCTCTATCATCACATCTATTTTCACGTGTTTTTGTTTGATCTATGTATGTTTTCCATTTTGGAGTGTTTTCTTGTGTGTTCAGTTTGTCTTGAGAAATAATTCATGTTTCTTCACACAGTTCCTCTCAGGGTTTATTTTGTATCTCAAATATCATTTTGATGGAATACGTAAAAACATCAACAGTTGTGTCGCCACTTCAAAAGCACGCATATACAAACAAATCCACTGCATATTAAAATTGAGACATTGTCCTAGCCAGCTATTGTCTACACTATTGGGTTGATAATTTGAAAGGGTTGAACAGATTTTTTCAAACAAGCTCaattaaagatattttttaacata

Function

symbol description
phf8 Predicted to enable chromatin binding activity; histone demethylase activity; and methylated histone binding activity. Involved in positive regulation of transcription, DNA-templated. Acts upstream of or within brain development; embryonic organ development; and regulation of neuron apoptotic process. Predicted to be located in nucleolus. Is expressed in head; mandibular arch skeleton; and tail bud. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Siderius type. Orthologous to human PHF8 (PHD finger protein 8).

NR:

description
PREDICTED: histone lysine demethylase PHF8

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0043523 regulation of neuron apoptotic process biological_process

KEGG:

id description
K19415 PHF8, JHDM1F; [histone H3]-dimethyl-L-lysine9 demethylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015605193.2 True 7242 mRNA 0.44 23 5508893 5523179

Neighbor

gene id symbol gene type direction distance location
troap NA coding downstream 978 5495426 ~ 5507915 (-)
LOC103038352 pfkma,LOC103038352,LOC108433267,LOC108276103,LOC107745467,LOC107681974,LOC107563631,LOC107695813,LOC107716200 coding downstream 15606 5476514 ~ 5493287 (-)
LOC103041955 NA coding downstream 34696 5456805 ~ 5474197 (-)
larp4 LOC108432190 coding downstream 53677 5430687 ~ 5455216 (-)
asb8 asb8,LOC107745463,LOC107681993,LOC107570421,LOC103141183,LOC107563629 coding downstream 83672 5416853 ~ 5425221 (-)
LOC103039185 arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding upstream 8047 5531226 ~ 5539719 (-)
wnt10b wnt10b,LOC108276208,LOC107570475,LOC107695810,LOC107745470 coding upstream 22143 5545322 ~ 5557149 (-)
ikzf4 ikzf4,si:dkey-166n8.9,LOC107563647 coding upstream 82745 5605924 ~ 5618039 (-)
dnajc22 dnajc22 coding upstream 96705 5619884 ~ 5628961 (-)
LOC103041954 LOC103041954,LOC108433384,LOC108275854 coding upstream 271626 5794805 ~ 5822814 (-)
G129581 NA non-coding downstream 47141 5427352 ~ 5461752 (-)
G129574 NA non-coding downstream 158790 5344780 ~ 5350103 (-)
G129503 NA non-coding downstream 280101 5228045 ~ 5228792 (-)
G129451 NA non-coding downstream 398856 5109631 ~ 5110037 (-)
G129439 NA non-coding downstream 430038 5065010 ~ 5078855 (-)
G129738 NA non-coding upstream 157631 5680810 ~ 5682002 (-)
G129749 NA non-coding upstream 200981 5724160 ~ 5724624 (-)
G129762 NA non-coding upstream 282910 5806089 ~ 5806914 (-)
G129791 NA non-coding upstream 506839 6030018 ~ 6031834 (-)
G129795 NA non-coding upstream 551569 6074748 ~ 6111588 (-)
G129514 NA other downstream 180196 5322696 ~ 5328697 (-)
G129376 NA other downstream 915129 4553615 ~ 4593764 (-)
G129260 hbs1l,LOC107756395,LOC107701737,LOC107723734 other downstream 1613477 3864883 ~ 3895416 (-)
LOC103029128 LOC108432343 other downstream 1805918 3665611 ~ 3702975 (-)
LOC103031137 LOC107572773 other downstream 1919978 3569978 ~ 3588915 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other upstream 76094 5599273 ~ 5601455 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other upstream 220814 5743993 ~ 5784566 (-)
LOC103044130 tac3 other upstream 671495 6194674 ~ 6201901 (-)
LOC111194060 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 other upstream 1515751 7038930 ~ 7056722 (-)
G130093 NA other upstream 1871760 7394939 ~ 7395791 (-)

Expression


Co-expression Network