LOC103044130 (tac3)


Basic Information

Item Value
gene id LOC103044130
gene name tac3
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 6194674 ~ 6201901 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246760.3
CACCTACAGAGCAGCATCTGATTGGACTTACGCACATGTGTCTGTCATTTAACCATCAGGGAGGAGAGAGAAGCCCTGTCTCTCTGCTCCAACTCTCATCTGCACACAGCTGGAGCTCCTGTCCCCTCGCGCACCAGCGAGCCGCGCGCTTTACCTGCAAACTGCACTTTCTCCAACCCAGACTGCCTCCCAGGATGTACCGAGCTTTACTATTCGCGGTCCTGGTTCTGGTGCTGGAACCTCGGTTCACCCAATCCAGCTGTCAGGATGAGGAAACGCACAGAGCAGTCTCAGATGAGGATCCCAGTTTTCGTCTCTCGTCGCGGAACTTCCCCAAGCGGTATAACGACATCGACTACGACAGTTTTGTGGGTTTAATGGGGCGGAGGAATGCAGATGCTGATGATGTGCCGTCTCCACGCAAACGAGAAATGCACGACATCTTCGTGGGGCTGATGGGGCGGCGGAGCAGCGATGCTGATACTGGGCGTCCGTGGAGGAGAGATCTGCCAGAGACCAGAGGCTTATTCTTTAACAAGTGCAGACTGAGATTTCGTCGTGGGTTATAGACCGAGCCGCTCCTCCACGCCCCTTTGGACCATCTGTACCGTTTTCTCACAAGATGAATCCTTTTCATGCCTCACTTTGGTGcagaaaaagagcaaaagagtTTAATTAAAGCAATTATTTAACTGAGATTTATCCAATTTATTCAAAGATGATTTTTGATTTACGTTTACCTGCAACTACCAATGATATAGATTGTATATACCAGTAGACAGACGTCTCCAGATACATTCTCTGTATTTGAGTATATTTGTTTACCAGTTATTTTTGCTttctaatgtaaaaaaacatgatttttttgtaaataaagacaTTATTTAATTGA
>XR_002650859.1
CACCTACAGAGCAGCATCTGATTGGACTTACGCACATGTGTCTGTCATTTAACCATCAGGGAGGAGAGAGAAGCCCTGTCTCTCTGCTCCAACTCTCATCTGCACACAGCTGGAGCTCCTGTCCCCTCGCGCACCAGCGAGCCGCGCGCTTTACCTGCAAACTGCACTTTCTCCAACCCAGACTGCCTCCCAGGATGTACCGAGCTTTACTATTCGCGGTCCTGGTTCTGGTGCTGGAACCTCGGTTCACCCAATCCAGCTGTCAGGATGAGGAAACGCACAGAGCAGTCTCAGATGAGGATCCCAGTTTTCGTCTCTCGTCGCGGAACTTCCCCAAGCGGTATAACGACATCGACTACGACAGTTTTGTGGGTTTAATGGGGCGGAGGAATGCAGATGCTGATGATGTGCCGTCTCCACGCAAACGTAAGTGCACTCCTGTACTCTCCTCTCATTTCCTCTcagctctcttctctctcagatACCCAGCAGTGCCCACATCTTCTGCCTCTTACAGGAGAAATGCACGACATCTTCGTGGGGCTGATGGGGCGGCGGAGCAGCGATGCTGATACTGGGCGTCCGTGGAGGAGAGATCTGCCAGAGACCAGAGGCTTATTCTTTAACAAGTGCAGACTGAGATTTCGTCGTGGGTTATAGACCGAGCCGCTCCTCCACGCCCCTTTGGACCATCTGTACCGTTTTCTCACAAGATGAATCCTTTTCATGCCTCACTTTGGTGcagaaaaagagcaaaagagtTTAATTAAAGCAATTATTTAACTGAGATTTATCCAATTTATTCAAAGATGATTTTTGATTTACGTTTACCTGCAACTACCAATGATATAGATTGTATATACCAGTAGACAGACGTCTCCAGATACATTCTCTGTATTTGAGTATATTTGTTTACCAGTTATTTTTGCTttctaatgtaaaaaaacatgatttttttgtaaataaagacaTTATTTAATTGA

Function

symbol description
tac3 Enables neuromedin K receptor binding activity and substance K receptor binding activity. Involved in positive regulation of flagellated sperm motility. Located in extracellular space. Implicated in hypogonadotropic hypogonadism 10 with or without anosmia.

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246760.3 False 892 mRNA 0.47 7 6194674 6201901
XR_002650859.1 True 983 misc_RNA 0.47 6 6194674 6201901

Neighbor

gene id symbol gene type direction distance location
LOC103043708 NA coding downstream 41080 6111842 ~ 6153594 (-)
LOC103042779 LOC103042779,LOC108432429,LOC108276147,LOC105897280,LOC103356902,LOC101169109,LOC108235199,LOC107681947,LOC104932563 coding downstream 153875 6037204 ~ 6040799 (-)
LOC103042474 LOC108433401 coding downstream 347817 5826686 ~ 5846857 (-)
LOC103041954 LOC103041954,LOC108433384,LOC108275854 coding downstream 371860 5794805 ~ 5822814 (-)
dnajc22 dnajc22 coding downstream 565713 5619884 ~ 5628961 (-)
LOC103043500 znf385a,LOC108433446,LOC107708851,LOC107570601,LOC107681944,LOC107586538 coding upstream 60996 6262897 ~ 6443935 (-)
neurod4 neurod4,LOC107683357 coding upstream 278583 6480484 ~ 6483848 (-)
LOC103045842 LOC108276088,LOC107716093,LOC108432462,LOC107695791,LOC100702077,LOC103385967 coding upstream 328674 6530575 ~ 6548372 (-)
LOC103046146 tmem107,LOC108433473,LOC107571795,LOC107695749,LOC107708779 coding upstream 384237 6586138 ~ 6589354 (-)
ribc1 NA coding upstream 575719 6777620 ~ 6786914 (-)
G129843 NA non-coding downstream 1153 6191118 ~ 6193521 (-)
G129834 NA non-coding downstream 32375 6159268 ~ 6162299 (-)
G129795 NA non-coding downstream 83086 6074748 ~ 6111588 (-)
G129791 NA non-coding downstream 162840 6030018 ~ 6031834 (-)
G129762 NA non-coding downstream 387760 5806089 ~ 5806914 (-)
G129870 NA non-coding upstream 32408 6234309 ~ 6243550 (-)
G129871 NA non-coding upstream 72810 6274711 ~ 6315974 (-)
G129878 NA non-coding upstream 83870 6285771 ~ 6358716 (-)
G129880 NA non-coding upstream 129469 6331370 ~ 6358963 (-)
G129875 LOC108432442,LOC108275580,LOC107571769,LOC107681933 non-coding upstream 246938 6448839 ~ 6455201 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other downstream 410108 5743993 ~ 5784566 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other downstream 593219 5599273 ~ 5601455 (-)
G129514 NA other downstream 865977 5322696 ~ 5328697 (-)
G129376 NA other downstream 1600910 4553615 ~ 4593764 (-)
G129260 hbs1l,LOC107756395,LOC107701737,LOC107723734 other downstream 2299258 3864883 ~ 3895416 (-)
LOC111194060 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 other upstream 837029 7038930 ~ 7056722 (-)
G130093 NA other upstream 1193038 7394939 ~ 7395791 (-)
ctnnbip1 ctnnbip1 other upstream 1533838 7735739 ~ 7790762 (-)
G130420 vwa5b1,LOC107664114,LOC107599492 other upstream 2335103 8537004 ~ 8537987 (-)
camk2n1 NA other upstream 2377501 8579402 ~ 8582453 (-)

Expression


Co-expression Network