G129843


Basic Information

Item Value
gene id G129843
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 6191118 ~ 6193521 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU175593
GCTTTTATTCCATTAGCTACATCTCCGCACAGCCAGTTCACACAGGTTAAGGCTTCAGATGTAACACGCAAAACATACAATAGTAGAAGAGCCCTTAAAAAAGGGATAcaagtaaatattatttttgtgacAGTCTGTATAAATGATATATTAAGACGTATACGTTCAGTTCATAAACTGGGGAAAGGCCTCCTGCATCTTCAGTCCAGCCGACCCACCCTGTGACCCTGTGGCTCAGCACCAAGCCACCAAAACACAAACTATCACACAACTGACACGAAACTAAATTACTTACCGTACCTTTAACTGACACCGATCTGGAGAATTACAGAGGCTGAGACAGACTGACAGCTTAATCTTCCTCTGACACTTACAATCCATCAGCTTTAATGCAtctcacagaaaacaaacacacagttttGATCCTTTAGAGAggtaaaaagtgcaaaaaagtcaaataaagaAAGCCTGCAACCAATAGCAAAATACAATGCTGGACAGTTTTTTGGACTGGATTTATAATATAGTGACTAAATTgagaatttatttaaatttaatttaattaaagatGATTAGATTGATGCTcctgaaaaaggaaaaaaaagcagtggTAAGAATGCAGAATTTCTTAGTTTTGCCTCCTAACTTAAGCCTAAAGTCCAGCCTGTCCAATAGAAGGAATAAAAAATTCTTCTCTGTGAATTAAACTCCAGAACTTCCCCATTTTGGGGAGCACAATTAAGTGTGTTCATGTTttagaaagaggaaaagaaacaACAAAGAAAGTTTGCATAAATTAGTTAATATGGAAATTGGTGCTCAGTAAACTAAAGACCCTTTCACACCAAGTCTGAAACTGATGaactgttacactgtgttaaGTATGCATTAATTATTTGCTGACCAATCAAATCTCCTGTTTACTTGTAAAGATTGGTGTTTAATTCATAtcggtttatttattgtcttgtgtttaaaccctgacCTCTAGATTTGCAGTGTAGTACTCTGTCAATAGATGCCActtttctgattggttaaaacttTGGGTAAACTAacccaatatacagctctggaaaaaattatgagtttcttgattttaccaaactgaaaacttctgatatataatcaagaggaagcttgatgatcacaagccatcaaactaagctgaactgcttggatttttgcaccaggagtaaaggcataaagttatcaaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcatgatttaaactgtgtttaaaaagcagggttattgcaccaaatattgatttctgaactatgaacttgttttctttgcattatttgaggtcttaaagctcttttttataaatgctctaaatgacaatatttttatttggaatttgtaatAAAggattgaataaaacaacaatgttcattttactcaaacataaacctataaatagcaaaatcagagaaactgaatcggaaactgaagtggtctcatagctgtatattatttccagagctgtactggCTTGCTTACAGTATGGAAATTATACTGCAATCTATTTATTAATACAGCTCTTGccaaaaacacagaaagcaAAACGTGTGTTGGACTTGATTTGCAAACTTTaagcaaaatattttaaatatgctcaGAAACAGTGTGGTCAGTGTGGTTTCCACTGTAGGTTGCTACCAGTTTCTCAGTACAAAAATATCTCAGTGGTTTGCTGTAAATCTCATGTTGCAGTGTAGGAGGCTGCGGTACATCCGGCTACAGTGAGCATCATCAGCTACACAGTATAATTCATACTGGCTTTACTCTCCCTGAATCAGCAGAGCTATCACAAACGCAGAACAGCCATAAAACCATTGGACATACTGAAGTAATATGAACTTATTGTTCCAGAGACAATAAGTATTAATATGGTGCTGCTAACAGAAGGCTAATGGTCTGTTTCAGTATACCGTCCATGCATACATTCTCCGTCGCCCACGTCCCACACAATCATATCAGCCTCTTCCAGGCTAGCCCTGGCTCTCCTGAACGGGAGCGGGGCTGCTGTCTGCTGGATTTCTCTCCGGAACGGCTTTAGCCACAGTTTGTGTCTCCGCTCGTCCGTGTAACTTGGGTGATTCAGGCTCCTCTGGTAGTGGAGGAGGTATTTTCACAGTGGGCAGGACTGTCCTCTCAGTCTGGGCTGCTTTGTTGAGGATGAGGGGAGCTGGGGGCTGGTAGCGGTGCTGGTAGCCGTAGGGCCGCAGGTGGTAGCTGTAGTACTCCAGAGTGTACATCAGCTCCGGGTCCACGTAATGAAAGGACACGGCCAGATCAGAGCAGCACTGAGGACC

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU175593 True 2358 lncRNA 0.39 2 6191118 6193521

Neighbor

gene id symbol gene type direction distance location
LOC103043708 NA coding downstream 37524 6111842 ~ 6153594 (-)
LOC103042779 LOC103042779,LOC108432429,LOC108276147,LOC105897280,LOC103356902,LOC101169109,LOC108235199,LOC107681947,LOC104932563 coding downstream 150319 6037204 ~ 6040799 (-)
LOC103042474 LOC108433401 coding downstream 344261 5826686 ~ 5846857 (-)
LOC103041954 LOC103041954,LOC108433384,LOC108275854 coding downstream 368304 5794805 ~ 5822814 (-)
dnajc22 dnajc22 coding downstream 562157 5619884 ~ 5628961 (-)
LOC103043500 znf385a,LOC108433446,LOC107708851,LOC107570601,LOC107681944,LOC107586538 coding upstream 69376 6262897 ~ 6443935 (-)
neurod4 neurod4,LOC107683357 coding upstream 286963 6480484 ~ 6483848 (-)
LOC103045842 LOC108276088,LOC107716093,LOC108432462,LOC107695791,LOC100702077,LOC103385967 coding upstream 337054 6530575 ~ 6548372 (-)
LOC103046146 tmem107,LOC108433473,LOC107571795,LOC107695749,LOC107708779 coding upstream 392617 6586138 ~ 6589354 (-)
ribc1 NA coding upstream 584099 6777620 ~ 6786914 (-)
G129834 NA non-coding downstream 28819 6159268 ~ 6162299 (-)
G129795 NA non-coding downstream 79530 6074748 ~ 6111588 (-)
G129791 NA non-coding downstream 159284 6030018 ~ 6031834 (-)
G129762 NA non-coding downstream 384204 5806089 ~ 5806914 (-)
G129749 NA non-coding downstream 466494 5724160 ~ 5724624 (-)
G129870 NA non-coding upstream 40788 6234309 ~ 6243550 (-)
G129871 NA non-coding upstream 81190 6274711 ~ 6315974 (-)
G129878 NA non-coding upstream 92250 6285771 ~ 6358716 (-)
G129880 NA non-coding upstream 137849 6331370 ~ 6358963 (-)
G129875 LOC108432442,LOC108275580,LOC107571769,LOC107681933 non-coding upstream 255318 6448839 ~ 6455201 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other downstream 406552 5743993 ~ 5784566 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other downstream 589663 5599273 ~ 5601455 (-)
G129514 NA other downstream 862421 5322696 ~ 5328697 (-)
G129376 NA other downstream 1597354 4553615 ~ 4593764 (-)
G129260 hbs1l,LOC107756395,LOC107701737,LOC107723734 other downstream 2295702 3864883 ~ 3895416 (-)
LOC103044130 tac3 other upstream 1153 6194674 ~ 6201901 (-)
LOC111194060 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 other upstream 845409 7038930 ~ 7056722 (-)
G130093 NA other upstream 1201418 7394939 ~ 7395791 (-)
ctnnbip1 ctnnbip1 other upstream 1542218 7735739 ~ 7790762 (-)
G130420 vwa5b1,LOC107664114,LOC107599492 other upstream 2343483 8537004 ~ 8537987 (-)

Expression


Co-expression Network