dnajc22 (dnajc22)


Basic Information

Item Value
gene id dnajc22
gene name dnajc22
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 5619884 ~ 5628961 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246749.3
TAATGGTTGTGATTCCTGGAGGAAATTCAGCATacttttctctgtattttgtgcttttttattgGAATATGTCTCATACAGGTTTGATAGCGTGATGTGTGCTTCACTGCACTGTTAATTTCCAGGTACAGGTAAAGTACTACTGATTGTGGTGCTAGTCGTCAATCACTGCTCCGGTCATAGATATATTTTCCTCACTTGAAACACATCATGTTCCCATGGCCAAACTAATAGTAGCCTATGCCCTGTGGGCAGTAGGAGGCCCTATGGGTCTTCATCACCTGTACCTCAGAAGAGATAGCCATGCTCTCCTGTGGATGCTCACTCTGGGAGGCTTTGGGGTCGGCTGGATGCGAGAGTTCTTCCGTCTCCCGGCCTACGTCAGTGAAGCCAAGAAGAAGCCTGAAGAAGTCAAACGTTCCTCCACCACTGCCCCACCGGTGGGCTTATTTCGCTTTGCTGGTCAGATCTGTGTGGGTATCTACTTTGGCTCAGTGGCTCTGATCAGTCTCCAATCTCTGAGCTTCTTCTATCTGATTGTGCTCCCGCTGAGCGTGGGGGCGGGCATCCATCTGGTGTCCTGCGTCGGCCAGCAGACATCTGACCTCCAGAAGACCCTCACTACCTGCATCATAACATCATCCATATTCTACGGCAGCACGCTCTCCCCTCTGCCCATCAGTATAGCAGCCAGTGTGACAGCAGCCAAGAACAGAAGATTCAAGGCTAAGCAACGTTCTGGAGGCCAGCCTGAGCCTATGGGGCCTCGTCTTTTTCGCCTGAGCCTGGCCGTGTTGGCGTTCTCAGCTCCTCTGGGATACGCCGTCTTTCACAACACCACGgctacactttactacatttcaGATTGCTTGGCAGCGATCCTCGAGATGTTTTGGTTCTTCCCCTGGCTCAGGGGGGCCCTGGAGTATGTCCTGTTGCTGCCGTATCAGATCCTGTGCGCTCTGACAGGTGGGAGGTACTACGAGGAGAGCTGGAGGAAGGTGCTGGAAATACTTCTGAATGAGTACAGCAAAAGAGAGATGGATGCCCTGAAGGTGCTGTCAGTCTCTGAGGGGGCCACACTCGAGGAAATAACCACCAGCTACAGGGATCTGGTTAAATTATGGCACCCAGACCACAACCCCAAGCAGCAGGACGAGGCACAACAGATGTTCATTCAAATCCAGGAGGCATATGAGACACTTATGAACAGACATAGGCCACGAAAAAGGaagtgattttattattattattaaagcacTATATGTATTGGGTCAGAATACATGTTGGCTAACATGcctttaattgaaaaaaaaaaaaaactaaaggggGATTCCAGCTGCAGTGAAAAATAAAAGCCTTAAGCATGTCTGTGGTTTACAAAGAGGGAGACTTataggtttaaaaaagaaatagtaaaaaaatccCTCTGATTATGTGTCTTGAAGGTGGGGGAAAACTAGCACTTTGGGGGCAGTGGGGAAACTTGTGAGCTTCTAAAGCTGTGCATTACAAATACAGATTACATATACAGAGTGTATGTTGTATTTTCATAATGGATGTGAGTTTCATAGTGAAAGAACACTAATAGatgaaaacacaataaataataaattctttaaaaaa
>XM_007246750.2
ACAGTGACGTTAATACGGAAGAGCTCCACTGCATGTACAGGTAAAGTACTACTGATTGTGGTGCTAGTCGTCAATCACTGCTCCGGTCATAGATATATTTTCCTCACTTGAAACACATCATGTTCCCATGGCCAAACTAATAGTAGCCTATGCCCTGTGGGCAGTAGGAGGCCCTATGGGTCTTCATCACCTGTACCTCAGAAGAGATAGCCATGCTCTCCTGTGGATGCTCACTCTGGGAGGCTTTGGGGTCGGCTGGATGCGAGAGTTCTTCCGTCTCCCGGCCTACGTCAGTGAAGCCAAGAAGAAGCCTGAAGAAGTCAAACGTTCCTCCACCACTGCCCCACCGGTGGGCTTATTTCGCTTTGCTGGTCAGATCTGTGTGGGTATCTACTTTGGCTCAGTGGCTCTGATCAGTCTCCAATCTCTGAGCTTCTTCTATCTGATTGTGCTCCCGCTGAGCGTGGGGGCGGGCATCCATCTGGTGTCCTGCGTCGGCCAGCAGACATCTGACCTCCAGAAGACCCTCACTACCTGCATCATAACATCATCCATATTCTACGGCAGCACGCTCTCCCCTCTGCCCATCAGTATAGCAGCCAGTGTGACAGCAGCCAAGAACAGAAGATTCAAGGCTAAGCAACGTTCTGGAGGCCAGCCTGAGCCTATGGGGCCTCGTCTTTTTCGCCTGAGCCTGGCCGTGTTGGCGTTCTCAGCTCCTCTGGGATACGCCGTCTTTCACAACACCACGgctacactttactacatttcaGATTGCTTGGCAGCGATCCTCGAGATGTTTTGGTTCTTCCCCTGGCTCAGGGGGGCCCTGGAGTATGTCCTGTTGCTGCCGTATCAGATCCTGTGCGCTCTGACAGGTGGGAGGTACTACGAGGAGAGCTGGAGGAAGGTGCTGGAAATACTTCTGAATGAGTACAGCAAAAGAGAGATGGATGCCCTGAAGGTGCTGTCAGTCTCTGAGGGGGCCACACTCGAGGAAATAACCACCAGCTACAGGGATCTGGTTAAATTATGGCACCCAGACCACAACCCCAAGCAGCAGGACGAGGCACAACAGATGTTCATTCAAATCCAGGAGGCATATGAGACACTTATGAACAGACATAGGCCACGAAAAAGGaagtgattttattattattattaaagcacTATATGTATTGGGTCAGAATACATGTTGGCTAACATGcctttaattgaaaaaaaaaaaaaactaaaggggGATTCCAGCTGCAGTGAAAAATAAAAGCCTTAAGCATGTCTGTGGTTTACAAAGAGGGAGACTTataggtttaaaaaagaaatagtaaaaaaatccCTCTGATTATGTGTCTTGAAGGTGGGGGAAAACTAGCACTTTGGGGGCAGTGGGGAAACTTGTGAGCTTCTAAAGCTGTGCATTACAAATACAGATTACATATACAGAGTGTATGTTGTATTTTCATAATGGATGTGAGTTTCATAGTGAAAGAACACTAATAGatgaaaacacaataaataataaattctttaaaaaa
>XM_022676893.1
TCCACAGTGACGTTAATACGGAAGAGCTCCACTGCATGTTTGATAGCGTGATGTGTGCTTCACTGCACTGTTAATTTCCAGGTACAGGTAAAGTACTACTGATTGTGGTGCTAGTCGTCAATCACTGCTCCGGTCATAGATATATTTTCCTCACTTGAAACACATCATGTTCCCATGGCCAAACTAATAGTAGCCTATGCCCTGTGGGCAGTAGGAGGCCCTATGGGTCTTCATCACCTGTACCTCAGAAGAGATAGCCATGCTCTCCTGTGGATGCTCACTCTGGGAGGCTTTGGGGTCGGCTGGATGCGAGAGTTCTTCCGTCTCCCGGCCTACGTCAGTGAAGCCAAGAAGAAGCCTGAAGAAGTCAAACGTTCCTCCACCACTGCCCCACCGGTGGGCTTATTTCGCTTTGCTGGTCAGATCTGTGTGGGTATCTACTTTGGCTCAGTGGCTCTGATCAGTCTCCAATCTCTGAGCTTCTTCTATCTGATTGTGCTCCCGCTGAGCGTGGGGGCGGGCATCCATCTGGTGTCCTGCGTCGGCCAGCAGACATCTGACCTCCAGAAGACCCTCACTACCTGCATCATAACATCATCCATATTCTACGGCAGCACGCTCTCCCCTCTGCCCATCAGTATAGCAGCCAGTGTGACAGCAGCCAAGAACAGAAGATTCAAGGCTAAGCAACGTTCTGGAGGCCAGCCTGAGCCTATGGGGCCTCGTCTTTTTCGCCTGAGCCTGGCCGTGTTGGCGTTCTCAGCTCCTCTGGGATACGCCGTCTTTCACAACACCACGgctacactttactacatttcaGATTGCTTGGCAGCGATCCTCGAGATGTTTTGGTTCTTCCCCTGGCTCAGGGGGGCCCTGGAGTATGTCCTGTTGCTGCCGTATCAGATCCTGTGCGCTCTGACAGGTGGGAGGTACTACGAGGAGAGCTGGAGGAAGGTGCTGGAAATACTTCTGAATGAGTACAGCAAAAGAGAGATGGATGCCCTGAAGGTGCTGTCAGTCTCTGAGGGGGCCACACTCGAGGAAATAACCACCAGCTACAGGGATCTGGTTAAATTATGGCACCCAGACCACAACCCCAAGCAGCAGGACGAGGCACAACAGATGTTCATTCAAATCCAGGAGGCATATGAGACACTTATGAACAGACATAGGCCACGAAAAAGGaagtgattttattattattattaaagcacTATATGTATTGGGTCAGAATACATGTTGGCTAACATGcctttaattgaaaaaaaaaaaaaactaaaggggGATTCCAGCTGCAGTGAAAAATAAAAGCCTTAAGCATGTCTGTGGTTTACAAAGAGGGAGACTTataggtttaaaaaagaaatagtaaaaaaatccCTCTGATTATGTGTCTTGAAGGTGGGGGAAAACTAGCACTTTGGGGGCAGTGGGGAAACTTGTGAGCTTCTAAAGCTGTGCATTACAAATACAGATTACATATACAGAGTGTATGTTGTATTTTCATAATGGATGTGAGTTTCATAGTGAAAGAACACTAATAGatgaaaacacaataaataataaattctttaaaaaa

Function

symbol description
dnajc22 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human DNAJC22 (DnaJ heat shock protein family (Hsp40) member C22).

NR:

description
dnaJ homolog subfamily C member 22

GO: NA

KEGG:

id description
K19370 DNAJC22; DnaJ homolog subfamily C member 22

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246749.3 True 1626 mRNA 0.46 4 5619884 5628918
XM_007246750.2 False 1535 mRNA 0.47 5 5619884 5628958
XM_022676893.1 False 1582 mRNA 0.47 5 5619884 5628961

Neighbor

gene id symbol gene type direction distance location
ikzf4 ikzf4,si:dkey-166n8.9,LOC107563647 coding downstream 1845 5605924 ~ 5618039 (-)
wnt10b wnt10b,LOC108276208,LOC107570475,LOC107695810,LOC107745470 coding downstream 62735 5545322 ~ 5557149 (-)
LOC103039185 arf3,ARF3,arf3a,LOC102781726,LOC106921537,LOC106954774,LOC104956878 coding downstream 80165 5531226 ~ 5539719 (-)
phf8 phf8,LOC107563633,LOC107745465,LOC107570386,LOC107681973 coding downstream 96705 5508893 ~ 5523179 (-)
troap NA coding downstream 111969 5495426 ~ 5507915 (-)
LOC103041954 LOC103041954,LOC108433384,LOC108275854 coding upstream 165844 5794805 ~ 5822814 (-)
LOC103042474 LOC108433401 coding upstream 197725 5826686 ~ 5846857 (-)
LOC103042779 LOC103042779,LOC108432429,LOC108276147,LOC105897280,LOC103356902,LOC101169109,LOC108235199,LOC107681947,LOC104932563 coding upstream 408243 6037204 ~ 6040799 (-)
LOC103043708 NA coding upstream 482881 6111842 ~ 6153594 (-)
LOC103043500 znf385a,LOC108433446,LOC107708851,LOC107570601,LOC107681944,LOC107586538 coding upstream 633936 6262897 ~ 6443935 (-)
G129581 NA non-coding downstream 158132 5427352 ~ 5461752 (-)
G129574 NA non-coding downstream 269781 5344780 ~ 5350103 (-)
G129503 NA non-coding downstream 391092 5228045 ~ 5228792 (-)
G129451 NA non-coding downstream 509847 5109631 ~ 5110037 (-)
G129439 NA non-coding downstream 541029 5065010 ~ 5078855 (-)
G129738 NA non-coding upstream 51849 5680810 ~ 5682002 (-)
G129749 NA non-coding upstream 95199 5724160 ~ 5724624 (-)
G129762 NA non-coding upstream 177128 5806089 ~ 5806914 (-)
G129791 NA non-coding upstream 401057 6030018 ~ 6031834 (-)
G129795 NA non-coding upstream 445787 6074748 ~ 6111588 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other downstream 18429 5599273 ~ 5601455 (-)
G129514 NA other downstream 291187 5322696 ~ 5328697 (-)
G129376 NA other downstream 1026120 4553615 ~ 4593764 (-)
G129260 hbs1l,LOC107756395,LOC107701737,LOC107723734 other downstream 1724468 3864883 ~ 3895416 (-)
LOC103029128 LOC108432343 other downstream 1916909 3665611 ~ 3702975 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other upstream 115032 5743993 ~ 5784566 (-)
LOC103044130 tac3 other upstream 565713 6194674 ~ 6201901 (-)
LOC111194060 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 other upstream 1409969 7038930 ~ 7056722 (-)
G130093 NA other upstream 1765978 7394939 ~ 7395791 (-)
ctnnbip1 ctnnbip1 other upstream 2106778 7735739 ~ 7790762 (-)

Expression


Co-expression Network