G129260 (hbs1l,LOC107756395,LOC107701737,LOC107723734)


Basic Information

Item Value
gene id G129260
gene name hbs1l,LOC107756395,LOC107701737,LOC107723734
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 3864883 ~ 3895416 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU174844
CTTGGCACGTCAAAGCCCATAGTCTGCTTCTTTCCAGAGACAGTCATCCGGGCAACTTTAGGAACTACCTCTGCTTCCAGGCGGTTTTCAGGAGCATCACGGGGTTTAGcTTTCTGTGGTGGGGGAGCTGCGGTGGGCTCTGGTTGCGTGATGGTTTTGGGTGCAGTTGTTTTTTGCGAGCTGCTGCTTTCTGAAGAGAGAATGGAGTCCAGAGCTCGGTGGGGGTCGCAGTCGTACTTCAGGGCAGCCTGGGTCAGAGTGGAGTCCGGGACCGAGTCTCCGAGCACCGTCCTCATCTGGTCCAGGCAGGAGTACAACCGACCTTGCTCCAATGGGTCAAGCATGTGTTCGGCGGTAGGTGAGGTTGgcatctcctcctcttcttcattttcctcctcctccagtgGCTCTACCTGCCGAGCCTGTCTCGAGTCCTGACGTGAGTAGATAAACTGAGCAGCTGTAGCAGGGGAGATGCAGTAATCATCATCCACTGACTGTCCATAAATGTCATCATCTTCAAACTTCGTCGTAGTTATAGCCCCGGACATTCCTGTGGCGAGACATGGTTTATTCAGGGAGTTTTCTGTGCTTTTTCCAGGCTAAAGTTCAGGCATATGCGTCTCACTCCACTGCCGCCATGATTACCCGTCAACGCGGCGAGGGCGCGCA

Function

symbol description
hbs1l Predicted to enable GTPase activity. Predicted to be involved in translation. Human ortholog(s) of this gene implicated in beta thalassemia. Orthologous to human HBS1L (HBS1 like translational GTPase).

NR:

description
PREDICTED: HBS1-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174844 True 672 TUCP 0.54 5 3864883 3895416

Neighbor

gene id symbol gene type direction distance location
myb myb coding downstream 12718 3833837 ~ 3852165 (-)
LOC103028287 LOC108410615,LOC107723767,LOC107756398,LOC107671895 coding downstream 119970 3740504 ~ 3744913 (-)
LOC111194054 LOC108434293,LOC105895779,LOC107573690,LOC103358197 coding downstream 143641 3716278 ~ 3721242 (-)
LOC103028285 NA coding downstream 167920 3685602 ~ 3696963 (-)
pan2 pan2,LOC107756401,LOC107723747 coding downstream 221713 3621075 ~ 3643170 (-)
rps12 rps12,LOC107671850 coding upstream 398391 4293807 ~ 4297904 (-)
sh3bgrl2 sh3bgrl2,LOC107549062 coding upstream 414949 4310365 ~ 4329344 (-)
irak1bp1 irak1bp1 coding upstream 555881 4451297 ~ 4459448 (-)
LOC103036111 tbx18 coding upstream 650935 4546351 ~ 4558138 (-)
LOC103042747 adcy6b,LOC108433131,LOC108276068,LOC107716189,LOC107745452,LOC107695824,LOC107668560 coding upstream 737426 4632842 ~ 4720653 (-)
G129246 NA non-coding downstream 29494 3835001 ~ 3835389 (-)
G129228 NA non-coding downstream 105149 3758901 ~ 3759734 (-)
G129229 NA non-coding downstream 106412 3757135 ~ 3758471 (-)
G129220 NA non-coding downstream 133955 3729562 ~ 3730928 (-)
G129216 NA non-coding downstream 150156 3714503 ~ 3714727 (-)
G129348 NA non-coding upstream 411881 4307297 ~ 4309976 (-)
G129359 NA non-coding upstream 457687 4353103 ~ 4439712 (-)
G129369 NA non-coding upstream 546539 4441955 ~ 4442344 (-)
G129393 NA non-coding upstream 804918 4700334 ~ 4700654 (-)
LOC111194056 NA non-coding upstream 849004 4744420 ~ 4903405 (-)
LOC103029128 LOC108432343 other downstream 161908 3665611 ~ 3702975 (-)
LOC103031137 LOC107572773 other downstream 275968 3569978 ~ 3588915 (-)
G129147 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 611712 3250508 ~ 3253171 (-)
alkal2 fam150b other downstream 851616 2989985 ~ 3013267 (-)
G129018 acp1,LOC107707021 other downstream 881104 2827573 ~ 2983779 (-)
G129376 NA other upstream 658199 4553615 ~ 4593764 (-)
G129514 NA other upstream 1427280 5322696 ~ 5328697 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other upstream 1703857 5599273 ~ 5601455 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other upstream 1848577 5743993 ~ 5784566 (-)
LOC103044130 tac3 other upstream 2299258 6194674 ~ 6201901 (-)

Expression


Co-expression Network