G129359


Basic Information

Item Value
gene id G129359
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 4353103 ~ 4439712 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU174994
CCTACACGTACATTCTATCTtaacgttttcttttttttttgcatttacccTTATGTCTTTATATAAAAGTATACAAACTAACATAGAAAGCCCCCTCGGCCCAGGCACATAGGACCAGTGAGGGGGTCGAACCCAAACCCCTAAACTTGTTATGTCCCTCGGGACGTCTGGGACAGAGGGCCAGGTGCACATGCAGCCTCAGTGTCCGCGGGATGGCACTTCCTGTGCAGGTAGCAGTATGGGGGACTGGGTGAGGGGTCACATGGCCAAACAGAATAAGCTGTGAATATAAACCCATCTTAATGacatgtacacaaacacacacactccgatacattcacacacagtaTAAACCACATGCATGCAGAGATCCACAAACAGCACACAGCCATACGTTACAAATGCCCATCCGCACAGtctcatacacacaaacacacacgtatacacacaaacacagggcTCTGATTCACCGAATCAGGTTTGTTTTAAAGCTATGGGCTAAATCAGTATACCAccaaaacacactaaaaaactGTGATGCACTGAATTTACTagagtgtattgtgtgtataatCCCCATCCACATCATTAGAAATTCAtcctgatattattttataaagttcTCTTTCTAAAAGGTATTAACCCTATAAAACTGACACAAATGTGAATATTCTACACTGAATCTTGAATTTCTGAATCTTGAATCTGCATTGAATATTGAAACTACTCATTATATGTATAATTTCTATAGTATTATGTGTTACTtgtcattttacattaatactGTTGTTGCATTCATTTAGATACCCcaattagccataacattaacacaatattaaaaatagccTGTTATTGTGTGGATCCccttctgtagttctgtaatttaTTGGGCACTTTTGACTGTTTACTGTCTAAACAGGTAACAAATATCTAAATTACTGGATCTTTAAACTGAGATCATTAAACCTGACCAAAGTGCAAAACGCAAATTACACTTGCCAATTATAGGGGGAGCCCCTAAGCAAGAAATACAAATTCTCaaaaaatgctgctttaaagagtCTTAAGGAGAATACAGTATGAGTTATACTGTAATGTTCAAGCGAATACTACTGTGCACTGAATGAATATCATCTCatttacaattattaaaaatggACCAATGATTCACAGGATTTAGTGGGGAAATGTTGGAAAAGTGCAGACAGGATGAttggctgtaaaaaaaatcctatactATAgagtttctgttgtttttcttattttgcatctcctaaaaaataataaaaataaatataatatttgtgttaaaaaaatcgCTTTGTCCTACTGAGGAACAGATGTAGTATTTTGTGCTACAGTAGCTCTTCTGAGAGAACAGACCAGATGGGTTAACCTTCAATTAATTGAACCTTGAGTTCCCTAGACACTGTAGTAGGTTTGCACACTGGAACAATCCTCAAGACCTGTCTGATGTTTtgtagatgttctgacccaagTTTCTGCTTGGCAATGTTTCCTGCTTTAACCCAATTTAAAGAACTGATTGCTCACTTGCTCATGTTGCCTAATATGTACAGCCCACCCCTTTAACAGGTGCAATTGGGTGCACATAATCTATAATACCCACTTAATCtcagtgattttaatgttatggctgattggtgtgtCATAATTGTTCAATATAAAGCCCATTCATATTTCTACATGAATACAACATACCATCACAATTAAATCTCTTAGATTACTAACTTCGCCAGTAACTGTGATACTATTATTAATTACTGTGGGATTAATCTGCACATCCTCAAGTTCATTCAGTGAATCACTTTCTTCAGAGTACGACCTGACTAGACCACAACTGCTGACTGTGAGCAGGAcctataaaaacaataaaataataaaaatctttcTGGCAATAAAATTAAGCTGTTTCTGATGAAACCAAGAACATATATGTAAAGCATCGACTGAATCAAGAAGAAAAGACCTCATGGAGACTGATTCCTTTAAAATGACTCCAGATTGCAGAATCGTTCATCAAGCAACTGAAGTACCAGGATTAAACTAAGTTTTACTGTAAAtctatatctgtctctctctctttctctcttttacaccATATATCTTtccaatatctctctctctctatcattctctctctctcactcacacacatacatatatatttatatatatacacaaacacacagtgttCCAAGGCACAGGCAAAACCACAGAGACTGAATCTTTCTCTCCCTTCTGCCAGATGACCTTGACCGGCCAATGCATCAGAAAGAAACACTCCCGACCTCCTTCAATACGCTAAGACAACCACACAGTGTTTCCGACTGAGCGTTTTTGCTAGCATGAAAGGAATGTGCGCTTCtaggaaaagagaaaaggacCGAAACGTCTTGCATCCCATAATGCATTGGAAAAATACCTACTCCCGTCAACCCCTGCTTAGTGGAGCTGTCCTCTTAAATGCTAAATGAGCCCCCCCAAGGTACTGTACAGACGTGCTGTGATGATGAATAGAGCGCTCATGAATGAATGGGTAAATGTGTGGATGTgagtgcacgtgtgtgtgtgtgtgtttgtaactgCTGTTACCTTAACTGCAGCTTTCTTGGGTTTGGGTTCAGGTTTAGGAGGAGCTGGTTTCGATGACAGGCGCTCCGACCTACGAGTGGgCTCCTGCTTTGTAACTTTAGTTGAATCTTTCCCCTCTGCTCCCTCAGGTGACTTCCTCTTGGGCATTTTGCCAATTGTTCGTTTTTTCCTGTAACTTGTTTACTTGAAACAGCTCTGTTTATTGATTGACCTTAGAGGTGAGTGAaacagtgagttagctagtttataACTAACCACGGAATAGTGAAGCTATACCGTATCAATATCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174994 True 2908 lncRNA 0.39 5 4353103 4439712

Neighbor

gene id symbol gene type direction distance location
sh3bgrl2 sh3bgrl2,LOC107549062 coding downstream 23759 4310365 ~ 4329344 (-)
rps12 rps12,LOC107671850 coding downstream 55199 4293807 ~ 4297904 (-)
myb myb coding downstream 500938 3833837 ~ 3852165 (-)
LOC103028287 LOC108410615,LOC107723767,LOC107756398,LOC107671895 coding downstream 608190 3740504 ~ 3744913 (-)
LOC111194054 LOC108434293,LOC105895779,LOC107573690,LOC103358197 coding downstream 631861 3716278 ~ 3721242 (-)
irak1bp1 irak1bp1 coding upstream 11585 4451297 ~ 4459448 (-)
LOC103036111 tbx18 coding upstream 106639 4546351 ~ 4558138 (-)
LOC103042747 adcy6b,LOC108433131,LOC108276068,LOC107716189,LOC107745452,LOC107695824,LOC107668560 coding upstream 193130 4632842 ~ 4720653 (-)
dtx3 dtx3,LOC107695821,LOC107745454,LOC107571783,LOC107716192 coding upstream 433431 4873143 ~ 4885884 (-)
LOC103043059 LOC108433165 coding upstream 469520 4909232 ~ 4973971 (-)
G129348 NA non-coding downstream 43127 4307297 ~ 4309976 (-)
G129246 NA non-coding downstream 517714 3835001 ~ 3835389 (-)
G129228 NA non-coding downstream 593369 3758901 ~ 3759734 (-)
G129229 NA non-coding downstream 594632 3757135 ~ 3758471 (-)
G129220 NA non-coding downstream 622175 3729562 ~ 3730928 (-)
G129369 NA non-coding upstream 2243 4441955 ~ 4442344 (-)
G129393 NA non-coding upstream 260622 4700334 ~ 4700654 (-)
LOC111194056 NA non-coding upstream 304708 4744420 ~ 4903405 (-)
G129405 rnd1,rnd1b,LOC103037018,LOC107571475,LOC107695736,LOC107577993,LOC107745453,LOC107668562 non-coding upstream 390617 4830329 ~ 4834242 (-)
G129432 NA non-coding upstream 545298 4985010 ~ 4985215 (-)
G129260 hbs1l,LOC107756395,LOC107701737,LOC107723734 other downstream 457687 3864883 ~ 3895416 (-)
LOC103029128 LOC108432343 other downstream 650128 3665611 ~ 3702975 (-)
LOC103031137 LOC107572773 other downstream 764188 3569978 ~ 3588915 (-)
G129147 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1099932 3250508 ~ 3253171 (-)
alkal2 fam150b other downstream 1339836 2989985 ~ 3013267 (-)
G129376 NA other upstream 113903 4553615 ~ 4593764 (-)
G129514 NA other upstream 882984 5322696 ~ 5328697 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other upstream 1159561 5599273 ~ 5601455 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other upstream 1304281 5743993 ~ 5784566 (-)
LOC103044130 tac3 other upstream 1754962 6194674 ~ 6201901 (-)

Expression


Co-expression Network