myb (myb)


Basic Information

Item Value
gene id myb
gene name myb
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 3833837 ~ 3852165 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007257840.3
gtgtgtgtttacactctGCTTGTAGTGAACTTAATGTCAGCCTACTTCCTTCTCTAAGCGGAGCCTCTGGGAGCTTATAGGCGcagagcacacacactctcacacactcacacacactccaccttcCACGGAGCAGCGGGATGTCGAGGCTCAAGAGACACAGTGTTTACAGCAGCGATGAAGAAGATGACGATGTGGAGAGTTATGAACATGACTATGATGCCCCTTCGGCCAAGACAGGAAAACGGCACTTAGGCAAAACACGCTGGACACGTGAAGAGGACGAGAAACTGAAGAGACTGGTGGAACATCATGGTTCAGAAGACTGGAAAGTCATTGCCAGCTTCCTGccgAATCGCACGGATGTTCAGTGTCAGCACCGCTGGCAGAAAGTCCTCAACCCTGAACTCATTAAAGGACCCTGGACCAAAGAGGAGGACCAGAGGGTCATCGAGCTGGTGCAGAAGTACGGCCCCAAACGATGGTCAGTGATCGCAAAGCACTTAAAGGGCCGTATTGGGAAGCAGTGTCGCGAGCGCTGGCACAACCACCTGAACCCTGAGGTGAAAAAGACGTCCTGGACGGAGGAAGAGGACCGCATCATCTACCAGGCACACGAGAAACTCGGGAACCGCTGGGCTGAAATCGCCAAACTGCTGCCGGGCAGAACTGATAATGCCATAAAGAACCACTGGAACTCTACAATGCGTCGTAAAGTGGAGCAGGAGGGCTACCTGCAGCTCAGCGCTAAAGTCAGCCCCACCCCCATAAGCAGCAACTACACCAAACCCACCCACCTGCTCAGCTACAGCCACACTCCAACCAGCAGCTCCATGTCCACCAGCCCCATCACTAACCAGTACCCCTTCTACATTTCTGACCCACAGAGGGTTCCGTTTCCGTTGGGTCTACAGctgaatatatttaacatccCTCAGCATGGCACTGCAGCTATACAGAAACACTATAATGAAGAGGacccagagaaagagaagagagtgaAGGAGATTGAGATGATTCTGATGTCGACAGAGAATGAACTGAAGGGAAAACAAGCACTAcccATCTCCATGGTCACCAGTTACGGGTGGGGTCGGGGCTCTATGACTGACTCCTCGATGGGCGTGGCCGTGTCAGTTCCAGCCCCGCCCATGGAGCAGGGCTGCCTACCTGAGGAGAGCGCTCATGGCAACACCAGCAGCCCcaacagcagtagcagcagcagcagcacgagcagcagcagcgcaggGAGCAGCGGGGTCCTGGCGGTCCTGCCCGAGTTCATGGAGGCCATCGACTCGtTCCTGAATGCATCAAGTCCAGATTCAGACAGCCAGAGTCTCCGTGTCTCGCCCTCCTCAGTGTGTCCCCAGAAGCCCCTGCAGCTGGACCTCGCTCTGCACTCTCAGAAAGAGAATGACATGTTCAGGACACCAACACTGAGGCGTTCCATAATGGAGTGTTCCCCTCGCACTCCGACTCCATTCAAAACAGGGCTGACCATGCAGGACACCAAATATGGACCACTAAAGAGGGCCCACAGCCCTCCTGTGGAGGCAGCAGTTGGCATTAAGCAGGAGCCGCAGGAGTGTGAGGTCAGCGTTGGGGGGGCACATCTCGACGAGCCCCCCATCAAGAACATCAAACAGGAGGCGGAGCCAACATGCTTGCAATGGGAGGGGCAAAGTCTCCACACTCAGCTGTTCGCTTCAAGTGGCCCCGCCCACAATATGCCTGACCTGTTGACAAGCTCTGTGCTGATGCTGCCTGGAGCGGAGAAGACTGAGGATGGTCATAAAGTCCCACAGATGCCCCGCAGGACCTTGGGCAGCCCACTACAGCAGCACCTGAGCACATGGGAGCAGGTGCTATGTGGGAAATCTGAGGACCAGCTCCTGCCGTCTGAGCCGACACACAAATACCTCAACAGCTTTTCCTCCCGCACTCTCGTCAtgtagaagagaggagagagagagagaaagaaagagggaaagaagaAGACAATCATTCcgaaaagagaggaaagagaaaacACTCCATGGCCGCTCCTCAGGTGGGGTTGAGTCATTGTGGTACATGATTTGGGAGAGGCACAAAGCCATTCATTAGACTGCACGGCCCTCAGTTCGGCCGTACCTTTTACCTGTTGGATTTCAGCCAACCAaagaattattataatattgtttttctaccttttttttttacctgtttttctggttttaatattgtattatatattttgtattataaatGGGGAAATGAACTGTC

Function

symbol description
myb Enables DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including definitive hemopoiesis; hematopoietic stem cell migration; and regulation of neutrophil differentiation. Located in chromatin. Is expressed in several structures, including head; hematopoietic cell; hematopoietic system; mesoderm; and vasculature. Orthologous to human MYB (MYB proto-oncogene, transcription factor).

NR:

description
PREDICTED: probable RNA-binding protein 46

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0035701 hematopoietic stem cell migration biological_process
GO:0001654 eye development biological_process
GO:0009790 embryo development biological_process
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
K09420 MYB, C-MYB; transcriptional activator Myb

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007257840.3 True 2268 mRNA 0.53 15 3833837 3852165

Neighbor

gene id symbol gene type direction distance location
LOC103028287 LOC108410615,LOC107723767,LOC107756398,LOC107671895 coding downstream 88924 3740504 ~ 3744913 (-)
LOC111194054 LOC108434293,LOC105895779,LOC107573690,LOC103358197 coding downstream 112595 3716278 ~ 3721242 (-)
LOC103028285 NA coding downstream 136874 3685602 ~ 3696963 (-)
pan2 pan2,LOC107756401,LOC107723747 coding downstream 190667 3621075 ~ 3643170 (-)
LOC103030607 LOC108432330,LOC108276274,LOC107756402,LOC107723745,LOC107549050 coding downstream 219103 3608304 ~ 3614734 (-)
rps12 rps12,LOC107671850 coding upstream 441642 4293807 ~ 4297904 (-)
sh3bgrl2 sh3bgrl2,LOC107549062 coding upstream 458200 4310365 ~ 4329344 (-)
irak1bp1 irak1bp1 coding upstream 599132 4451297 ~ 4459448 (-)
LOC103036111 tbx18 coding upstream 694186 4546351 ~ 4558138 (-)
LOC103042747 adcy6b,LOC108433131,LOC108276068,LOC107716189,LOC107745452,LOC107695824,LOC107668560 coding upstream 780677 4632842 ~ 4720653 (-)
G129228 NA non-coding downstream 74103 3758901 ~ 3759734 (-)
G129229 NA non-coding downstream 75366 3757135 ~ 3758471 (-)
G129220 NA non-coding downstream 102909 3729562 ~ 3730928 (-)
G129216 NA non-coding downstream 119110 3714503 ~ 3714727 (-)
G129199 NA non-coding downstream 144003 3643512 ~ 3689834 (-)
G129348 NA non-coding upstream 455132 4307297 ~ 4309976 (-)
G129359 NA non-coding upstream 500938 4353103 ~ 4439712 (-)
G129369 NA non-coding upstream 589790 4441955 ~ 4442344 (-)
G129393 NA non-coding upstream 848169 4700334 ~ 4700654 (-)
LOC111194056 NA non-coding upstream 892255 4744420 ~ 4903405 (-)
LOC103029128 LOC108432343 other downstream 130862 3665611 ~ 3702975 (-)
LOC103031137 LOC107572773 other downstream 244922 3569978 ~ 3588915 (-)
G129147 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 580666 3250508 ~ 3253171 (-)
alkal2 fam150b other downstream 820570 2989985 ~ 3013267 (-)
fbxo25 fbxo25,LOC107715015,LOC107593986,LOC107664196,LOC107697951,LOC107707022 other downstream 851237 2849304 ~ 2982600 (-)
G129260 hbs1l,LOC107756395,LOC107701737,LOC107723734 other upstream 12718 3864883 ~ 3895416 (-)
G129376 NA other upstream 701450 4553615 ~ 4593764 (-)
G129514 NA other upstream 1470531 5322696 ~ 5328697 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other upstream 1747108 5599273 ~ 5601455 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other upstream 1891828 5743993 ~ 5784566 (-)

Expression


Co-expression Network