RNA id: TU175272


Basic Information

Item Value
RNA id TU175272
length 3028
lncRNA type read_through
GC content 0.36
exon number 2
gene id G129581
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 5427352 ~ 5461752 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttAAATCAAtttttggGGGTTAGATCCCATCTAGAACATGCAAAAGTGTGTTTGAGTGGATTTTGGAGAATTAGCTAGGAGCTACAGTGAGGTTTGGACCTGTTGGTCtggatttttctctttttttttttttttgcatttatttgcgTGACGTTAGCTGATTACAGTATGCTGCCGGAATCAGAGAGCCGGTATTTAGAAATTGTAAAGCGCAGTATAGAAAGCTTTGGATTGTTGAGCCTCGGTAATTATTCATATACATCGCTTATAAGGTCAAAGCTTGCCAATGATGATGCGGTGGTGTTGAATGTCTGGTTTGCTGAAGGTTGTTTTTAGTTtccttttcctttccttttctttttaaagcttGCTTGAGTAACCAAGAGCCTGTGAAGGATCACGATCACAGTCGGGTACTTTGTGTCATCTCATTTATGttcagaattattattatttttatttttaattttttttgtgcattatccTCCCAGAATGGCTTCTGAGCAAGCCCATATTTCCTGATAATCAGGCAGGCACGTGGCTGTGTTTACAACATTTATGTTGGTTTGGGCTAACGCGAGACAGGCTAAGCCAATGGCtgctttttggttttgttttgggtgacgtttttttttttttttttttttctctctctctcttttcttaaaATCAGGACAtttcaatattaataattaatgacgaGTAGCTATATTGTGCTTAGTAGATTTGTCAGTGTGATGTAGGTCTGGAAAACCTGAAGCCTATTTGATTGATTGACTAGTGATGTCAATATCCTTTTATATATCATCGGATGGTAATTGGTTGATGATTcattgtgggaaaaaaaaagtctgggcAGTTGgtttttaattatgattattttttatggttttttTCACATCCATTAACaatcctgtttattttttaatttatttatttattgtttttccatttttgattaatttcatttaatttcatttgtttgCTTCTGACCTTGGTGTGAATGACAGCAAGTACAGGACAGAACCTTGAAAGTAAAGAATGAGCGTCTCTGGGGTTGCAGTGTGTATGaaacgtaaaataaaaaaaacaaacacgggTGGTCTGGCAAAATTCGTCGAGCCACGCCAGAATCACCTGCTCAGAATATCTTGAGGTCTGATTATGCATGAACAtgctctcccccccccccccccccccttaatcCCCAACTAAGAGACTTTTTTCAtaggttgtttaaaaaaaaaaaaagaaaagttatttATGGAAGGCCGTGTATGGAATGTACTGGATTTCCTTGCTGAAAGAATGAGCGTCAGAAtgcattaatttttattaattctaaCTATAACAGGTTTCTGTGAGGCAGggggcaacaaaaaaaatcacatcttCAATGTCTTCATGCTTAGTATTCATTGAGTGTCCTCCAATTCTAAAAAATCTTTTGAGTGCTTCTTTCTGAGCACTGAAAGTCTGATAAAAGGAAAGATCTGCTGCTTCCTTCTCTGTTCAGATAGCTAGAGCAATATCTGAAATTCCTTCGCAGGCGTTCCCGTGCGAGATTCCCGAAGGCTCCAGCGGAATAATGTTGGGAATGAAGAGTTTGGGATGATTAGAAGCTGCATTGAACTCAGTCAGCCTGTGCGCTTGGTTGATCTAGACTAGATTTGCTCTCCGAATCTGTGGAATCTGCACTAAAGCACATGAATATGAAGAGGGctgcttttctgtgtgtgtaaccCTAACCTTTCTTGGACTGCACCTTCTGGGCGGCTCGCTTTCGGAAGCAGGGACTTTGTCGTCACCGCCGCCGCCAAAAGAAAAGTGTAGGTGAAGGAGAACTGGTgctgttgataaaaaaaatacaagatataCAATGAAATCAGAGGGAGATGCAGTATTGCTGTTTAATTCATTGTTTAAGTATTGCTTTTAtggaattataataatttttttctttttaatttattttaatcctgctgCCCTATTCCCCTCCTCTTCATCCCCCTGCCTCATCCCAATCCATGTAGGCCGGGTTCCTGACAATGTACAAATATAACATGACATTGGGAGAGAATCACAGATTTaacatttgtatatttttgaggTTTCAGCAGAGAGAAAATACTTGATGCATTTACTAGAGGCTTAGTAATGCGGTAAATAAATAACGAATCACTGGggcttttattgtttatatatatttttcttttgttttcattaATGAATTTGAGCAGCTAGTGGTTTAGtgtaatgaaacaaaaatgcactaacttgttaaaaaaaatcttactgtTATGTAATGTGAAATCATATTAGAAGCATAAGATAATGATATTGATGTTGACAGGCTTGCAGAAATCTACGGGAATAGCATTCTCCTTAATGCTTGGGGTATTACTGTTAATTGACTTTAGGGGTGGTGTGGCAAAGGGAGGAATTCTTTAATAATGGATTGAAAGTGTGGGAGACACTAAATTCTAGCTGTCTGCATAAAAATgtcacaaaaagaaaataaattattttgttttggccTTAGAGTTtcgcttcattttttttgttgcagtcaTCTTGATTTACATTTACTAACAGTTTGCCTTTTGACTGTTAAATTTGCTTTTACATGTTAGGATTTGTATGTTttcaaatgcattaaaacaccAGTGTGActcatctctttttctttttttttttctttcatttataaATTTGAGACTTTTACACTGAGTAAATTCATACTGTTAGACAGGCTTATACATAAAGGCATTCCTGGTTAAAGTACAGGACAGAAAAGATGTGTCCTGATTCAGTTCCTGTTAATTTTCTGAAGTTACCTTATTGGAAAGAAAATCAATAACATATTTAGCGTTGTTGCTATGTTAAATTAGGCAAATAAATTTGACTGTATTATAATGTTGTTTACTCagtctttattttcttctgtaatTAACCTACCAAAATGGATTTTGGAGATCTTTTTGCTTCTGGCCAACAACATATATAGTGTTTAGATTTACtggttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175256 lncRNA downstream 77249 5344780 ~ 5350103 (-) True G129574
TU175255 lncRNA downstream 77489 5344780 ~ 5349863 (-) False G129574
TU175169 lncRNA downstream 198560 5228045 ~ 5228792 (-) True G129503
TU175101 lncRNA downstream 317315 5109631 ~ 5110037 (-) True G129451
TU175087 lncRNA downstream 348497 5065010 ~ 5078855 (-) True G129439
TU175463 lncRNA upstream 219058 5680810 ~ 5682002 (-) True G129738
TU175475 lncRNA upstream 262408 5724160 ~ 5724624 (-) True G129749
TU175458 lncRNA upstream 282241 5743993 ~ 5746520 (-) False LOC103042879
TU175494 lncRNA upstream 344337 5806089 ~ 5806914 (-) True G129762
TU175525 lncRNA upstream 568266 6030018 ~ 6031834 (-) True G129791
XM_007243376.3 mRNA downstream 2131 5416853 ~ 5425221 (-) True asb8
XM_015604347.2 mRNA downstream 2136 5416853 ~ 5425216 (-) False asb8
XM_007243377.3 mRNA downstream 2274 5416853 ~ 5425078 (-) False asb8
XM_015604346.2 mRNA downstream 2382 5416853 ~ 5424970 (-) False asb8
XM_022676878.1 mRNA downstream 16578 5351606 ~ 5410774 (-) False atf7
XM_007246741.3 mRNA upstream 14762 5476514 ~ 5493287 (-) True LOC103038352
XM_022676883.1 mRNA upstream 33674 5495426 ~ 5507915 (-) False troap
XM_007246740.3 mRNA upstream 33674 5495426 ~ 5507915 (-) True troap
XM_022676885.1 mRNA upstream 33674 5495426 ~ 5507914 (-) False troap
XM_015605193.2 mRNA upstream 47141 5508893 ~ 5523179 (-) True phf8
TU175180 other downstream 98655 5322696 ~ 5328697 (-) True G129514
TU175013 other downstream 833588 4553615 ~ 4593764 (-) True G129376
TU174844 other downstream 1531936 3864883 ~ 3895416 (-) True G129260
TU174772 other downstream 1724377 3668863 ~ 3702975 (-) False LOC103029128
TU174756 other downstream 1838437 3583509 ~ 3588915 (-) False LOC103031137
TU175443 other upstream 137521 5599273 ~ 5601455 (-) True G129723
XR_002650859.1 other upstream 732922 6194674 ~ 6201901 (-) True LOC103044130
TU175898 other upstream 1577178 7038930 ~ 7056722 (-) False LOC111194060
TU175928 other upstream 1933187 7394939 ~ 7395791 (-) True G130093
TU176099 other upstream 2273987 7735739 ~ 7790762 (-) True ctnnbip1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044833 True 2846 lncRNA 0.38 2 NC_007134.7 27508870 ~ 27516273 (+)
grasscarp (Ctenopharyngodon idella) TU21256 True 2880 lncRNA 0.36 3 CI01000001 10437326 ~ 10440371 (+)
grasscarp (Ctenopharyngodon idella) TU296240 True 601 lncRNA 0.36 2 CI01000062 4165382 ~ 4166002 (+)
striped catfish (Pangasianodon hypophthalmus) TU296240 True 2089 lncRNA 0.45 3 NC_047610.1 6387726 ~ 6407587 (-)