LOC103039653 (scn8aa,LOC108433193,LOC100304804)


Basic Information

Item Value
gene id LOC103039653
gene name scn8aa,LOC108433193,LOC100304804
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 5121999 ~ 5224651 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022676738.1
GTGGGGGAGATCAGCACAGCCCGTCTATCTGCTCGACGTCCTTCTGCTACTGCTCGAGTCCTGCTGGTGCTCGGTTTGAACGGCGTTTTAAACAGGTTTGGACGGGACGGTGCTGGTGCTTTACGGTGAGATGGGTGGATTTGCTGCCTGCCATCAATAATGCAGAGCGACTGCACACactgccagcagcagcagcatcagcagcagcagcatcagcaccagcttcagcttcagcagCAACATGGCGACCACCGCAGTTTCTTCAGGAGCTTTCCCACATCTGCAGTCCTGCCACTCGCTTTTGCATCGCCTTTAACCTCAAACACACTGCCCTGGATGATATATAACTAAAGAAGCAGTCGCTGCAGGATGAAAACATGGCTGCACCGCTGCTCGCACCGCCAGGACCTGACAGCTTCAAATATTTTACCCGGGAATCTCTGGTTAACATCGAGAAGCGCATCGCCGAGGAGAAAGCCAAGCCTCCGCCCAAGCCCGACAGCAGCTACCGCGACGATGACGACGAGAACAAGCCCAAGCCCAACAGCGACCTGGAGGCGGGCAAAGGACTGCCGTTCATCTACGGCGACATCCCGTCGGGGATGGTGGCGACACCGCTGGAGGACCTCGATCCCTACTACTTGAGTCAGAAAACATTTATAGTGCTAAACAAAGGGAAAACAATCTTCCGCTTTAGTGCCACACCGTCCCTGTACATGATAAGcccttttaatatttttaggcGAATAGCTATTAAAATTTTGATACATTCATTATTCAGCATGATCATCATGTGTACCATTTTGACCAACTGTGTATTCATGACCTTTAGTAATCCTCCCGAGTGGTCCAAACAAGTAGAgtacactTTCACAGGAATTTATACTTTCGAATCAGCTGTAAAAATCATTGCCCGTGGATTCTGTATAGACGACTTCACATTCCTAAGAGATCCATGGAACTGGCTGGATTTCATGGTCATCTCAATGGCATATGTAACAGAGTTTGTGGACCTGGGGAATGTATCTGCGCTGAGAACGTTCAGAGTTCTCCGAGCATTGAAAACTATCTCTGTCATTCCAGGTCTGAAGACCATTGTTGGCGCCTTGATCCAGTCAGTGAAGAAGCTGTCGGACGTGATGATCCTCACTGTTTTCTGCCTCAGTGTGTTTGCTCTGATCGGCCTTCAGCTCTTCATGGGGAACCTGCGGCAGAAGTGTGTTATCTGGCCCATCAACATCACGGAAAGCTACCAAGGCAACAGCAGCCGCTTTGACTGGAATGAATACATCATGAACGAGACCAATTTCTACTTCCTCCCTGGCACTCTGGATGCTCTTTTATGTGGAAACAGCTCAGACTCTGGCCGTTGTCCAGAGGGCTACACATGTATGAAGGCTGGAAGGAATCCAAACTACGGCTACACCAGCTTCGACAGCTTTGGCTGGGCCTTCCTGGCTCTTTTCCGCCTCATGACGCAAGACTTTTGGGAGAACTTGTACCAGCTGGTAGGGGTCATTGGAATTTATGAAGTGTTGATCTggaaaacacttaaacataaacagCAGAGAAAGTTTTTAactgtttgttgttttgctcTGCTTCAGTCTCTCCTCAGCATCCCCGGCTCACCCTTCTTGTCACGGCACAACAGTAAGAGCAGCATCTTCAGCTTCAAGGGCCGCTGTCGGGATGCAGGTTCTGAAAACGAGTTTGCGGACGACGAGCACAGCACAGTGGAGGAGTGCGAGGAGCGACGCGGCTCGCTCTTCAGCCCCTACCGCCGCAGCAGCTACAGCGGCTACCACGGCAAGCGCAATAGCACGGTGGACTGCAACGGCGTGGTGTCCCTGATCGGGCCTGGGCCTGGAGGACGCCTTCTGCCTGAGGTGATAATAGATAAGGCAGCTTCTGATGACAGCCCAACGACTGATGTTGAGATTAAGAAGAAACTCTCAGGCTCTCTAATGGTGTCTATGGACCAACTTAATGCTTCTTTTGGGCGCAAAGAACGGGCAAACAGTGTCATGAGTGTTATTACCAACACATTAGTAGAAGAACTGGAAGAGTCTCAGAGGAAGTGTCCACCATGTTGGTACAAGTTTGCGAATATCTTCCTGATCTGGGAGTGCTGTCCTGCGTGGCTGAAGATTAAGGAGATTGTGAACCTGATCGTGATGGACCCCTTTGTGGACCTGGCCATCACTATATGCATCGTCCTCAACACTCTCTTCATGGCCATGGAGCACTATCCAATGACTCCGCAGTTCGAGCATGTGCTGTCAGTGGGCAACTTGGTGTTTACAGGAATTTTCACTGCCGAAATGTTTGCCAAGCTGGTTGCTATGGACCCATACTACTACTTCCAGGAGGGCTGGAACATCTTTGATGGTTTTATCGTGAGCTTGAGCTTGATGGAACTTGGACTGGCCAATGTGGAAGGCCTCTCTGTTTTGAGATCATTCCGATTGCTGAGAGTATTTAAACTGGCCAAGTCTTGGCCGACTCTTAACATGCTGATCAAGATCATCGGGAACTCGGTAGGGGCTCTGGGAAACCTAACCCTTGTGCTGGCCATCATCGTCTTCATCTTTGCTGTGGTGGGCATGCAGCTGTTTGGGAAGAGCTAtaaagactgtgtgtgtaagatCGCTCAGGACTGTGAACTTCCTCGCTGGCACATGAACGACTTCTTCCATTCCTTCCTGATTGTTTTCCGTGTGCTGTGTGGAGAGTGGATCGAGACCATGTGGGACTGCATGGAGGTGGCAGGACAGGCCATGTGTCTCATCGTTTTTATGATGGTCATGGTCATCGGAAACTTAGTGGTGCTGAATCTGTTCCTTGCCTTGCTACTGAGCTCCTTCAGTGCAGACAACCTGGCAGCTACTGACGACGACGGCGAGATGAATAACCTGCAGATCTCTGTGAACCGTATCAAGACTGGCATCGCCTGGTTCAAGGCTAAAGTACGACAGCTGGTGGCCATCATACTGAAGAGGAAGGTCACAGATGAGGCCAAGCCCCTGGATGAACTTTACGACAGGAAGCTTAACTGCATTGCCAACCATACGGGCGTGGACATCAACCGCGATCTGGACTACCAGAAGAATGGCAACGGCACCACCAGTGGCATAGGCAGCAGCGTGGGCAAATATATGATCGACGAAGACCACATGTCCTTCATCCACAACCCCAACCTGACTGTGTGTGTTCCCATAGCTGTGGGAGAGTCAGACTTCGAGAATCTCAACACAGAGGACTTCAGTAGCGAGTCAGAGGCTGAGGGCAGCAAAGATGGGCTGGATGACAGCAGTTCGTCGGAAGGCAGCACTATAGATATTAAACCAGAGGTGGAGGAGGCTGTGGTGGTGGAGGCAGTGGAGGAGTATTTGGACCCGGAAGCCTGCTGGACTGAAGCTTGCATTGCGCGCTACAAGTGCTGTGATGTCCCCATCACGGAAGGCTGGGGAAAAAACTGGTGGTACCTTCGGAAAACATGCTATCTGATCGTGGAGCACAACTGGTTCGAAACCCTCATCATCTTCATGATCCTGCTCAGTAGTGGAGCACTGGCTTTTGAAGACGTATACATTGAGCAGAGGAAGACCATCCGGATCATCCTGGAGTACGCTGACAGAGTGTTCACCTATATCTTCATCTTGGAGATGCTGCTCAAATGGGTGGCGTATGGTTTTGTCAAGTACTTCACCAACGCCTGGTGCTGGCTGGACTTCTTCATTGTGGACGTGTCTATAGTCAGCCTTATAGCTAATGCGCTGGGCTACTCCGATCTAGGGCCCATTAAATCACTCAGGACACTCAGGGCCCTGAGACCACTCAGAGCATTGTCACGTTTTGAAGGGATGAGGGTGGTAGTCAACGCCCTGGTGGGTGCCATCCCTTCCATTATGAATGTGTTGCTGGTTTGCCTCATCTTTTGGCTGATTTTCAGTATCATGGGGGTCAATCTGTTTGCGGGCAAGTATTACTACTGTTACAACGCCACTGCAGAGGAGTACTTCGATCCAGATGAGGTGAACAACAAAACGCAGTGCTTTGAGCTCATCAATCAGAATTTTACTGAAGTGCGCTGGAAGAACGTCAAGATTAATTTCGACAACGTGGGTGCCGGCTACCTGGCTCTGCTCCAAGTGGCTACCTTCAAAGGCTGGATGGATATCATGTACGCAGCTGTTGACTCACGAAGGGTGGAAGACCAGCCCATGTATGAGGACAACATCTACATGTACATTTACTTTGTCATCTTCATTATTTTTGGTTCATTTTTCACTCTCAACCTGTTCATTGGTGTCATCATCGACAATTTCAACcagcaaaagaaaaagTTTGGAGGTCAGGATATCTTTATgacagaagaacagaagaaaTACTACAACGCAATGAAGAAGCTAGGATCAAAGAAACCACAGAAACCCATACCTAGACCGCAGAACAAGATCCAGGGGATGGTGTTTGACTTTGTGACGCAGCAGGTCTTTGACATCTCCATCATGATCCTCATCTGCCTGAATATGGTGACTATGATGGTGGAAACGGACGATCAGTCTGATGAGACGGAGAACATCCTCTACTGGGTCAACTTCATCTTCATTGTGGTCTTCACGTCTGAGTTCGTCCTCAAGCTCTTTGCCCTGCGCCATTACTACTTTACTAATGGTTGGAATATATTTGACTGCGTTGTGGTCATTCTTTCTATCGTAGGAATGTTCCTGGCGGATCTGATCGAGAAGTACTTTGTGTCGCCGACGTTGTTCAGGGTCATCCGTCTGGCCCGAATCGGTCGCATCCTGCGTCTGATCAAAGGGGCCAAGGGCATCCGAACTTTACTGTTTGCCCTGATGATGTCACTGCCAGCTCTGTTCAACATCGGCCTGCTGCTGTTCCTGGTCATGTTCATCTTCTCCATCTTCGGGATGTCCAACTTCGCCTACGTCAAACGGGAGGCGGGTATCGACGACATGTACAACTTTGAAACCTTCGGGAACAGCATGATCTGCCTGTTTATGATCACCACCTCTGCAGGGTGGGACGGTCTGTTGGCTCCCATCCTCAACTACGCTCCCGACTGCGACCCTAATAAAGAGAATCCGGGCACCACGGTGAAGGGTAACTGCGGCAATCCTTCCGTGGGCATTTTCTTCTTTGTCATGTACATCATTGTGTCTTTCTTGATTGTGGTGAACATGTACATCGCCATCATCCTGGAGAACTTCAGCGTGGCGACAGAAGAGAGCGCAGATCCTCTGTGTGAGGACGACTTTGAGTCTTTCTACGAGATCTGGGAGAAGTTTGACCCCACTGCCTCGCAGTTTATTTCATTCGCAAAGCTTAGTGACTTCGCCGACACTCTGGAGCACCCGCTGCGGGTGCCCAAACCCAACACTATAGAACTCATCGCCATGGACCTGCCCATGGTGAGCGGAGACCGCATACACTGCCTGGACATTCTGTTCGCCTTCACCAAGCGCGTCCTGGGCGACAGTGGCGACTTGGACATGATGCGTCAGCAGATGGAGGAGCGCTTCATTGCCGCCAACCCCTCCAAGGTGTCCTTTGAGCCCATTACCACAACTATGCGACGCAAGCAGGAGCACATGTCCGCTCAGGTCATCCAGCGAGCTTACCGCGCTCACCTGGTGCGCCAAGGTTTCATCTGCAAAAGGTTCCTCGGCAGCAGCAGGCTGGAGAACGGAGGGACCAACCAGGACAAGAAGGAAGGAACACCGTCTACTGCCTCACTGCCCTCCTACGACAGTGTGACCAAACCTGAGAAAGAGAAACTGGACGACAGCGAAAGCAAAGGCAAGAAAGGCAAAAACCAAAAAGACGTTAAGGAATCTAAGTGTTAAAAGTATGAACAGAGGGAATGAACAGAAAGAGACATTAAGAATTAAAAGGAAACTCTGTATCCGTTcaaacaaatgtacaaaaaatctTTTCAAAGAAAACCCAGAAAATccgaaaaaaaagttgtttacaGACTTCTGAGCTGCGCCAGTGCAGAAAAAGCAGCATGGTTTCTTACCACGTTGATTAcgaccaaaccaaaccataacGAGCTTACCGCGTGGCGCCTGAGCTCAGCAACCAAGATTCCGCTGCTTGAACAGCAGCCAGAGCGACAAAAACGTATAATAATATTCAGCAAGAAAAGCCCATGGCAGATAACTTCAATCGGGACCACCTGCCATAGGACTGAGCGGTATACAGAGTAGACGTTTTAAAGATGGCTTCTTTCACACCACTATGTGTGGAGTTCAGCATTCCTCCACTACGAATTTACcccttacaaaaaaaacactacactgCCGAAATCCAGTGGAATCCTCCCACTTGGTAACACAGGAAGGTTTCTGGAACATTTTCATGTGACTACCGGAAAGGAACAGTTCCTAGCAGAGATGGTGAAAATGAGAGAAGATactgagaaaatgaaaaaagagaaaaaacttaacaaaaaaaaaacccagaacaatATGCAAGGGTTTTTTTCAGTTGTGTGTGATCAGTATACTTGcatctttacattatttggtcagcaaaaaaagaaggtttaaaaaaaaagagaaacattcAGCCCATGTCACACTAGTCTTTTCATCATCTCTTTGTTATACTTGcgtaaaaaagacattttttacatGGGCTTTCACACTGCAATTGGGTAGGCGGGGGGTCATTTATCAGGGTTTTGACTTGGGCTGAAAGGAACTTGCTCAGACCAGGTTCCagataaataagtaattaattGTGCTCGTTCAATGCATAGAAATGACTTGCATGGTGGCATGTTTTGATCAGAAATCATGCATGTGTAATCATAGTCCACTTGACACTTCTGCTCAGACCACAGACGTGGCTTGAACACAAGTTTGAGGCTGTCCACTGGCAACACATTTCAGTAGAAATTCCACTGGAAAGGGAACCAATTGGGAACATTATCCAAAAACTGGGTTTTTgcaaatatatgtatttgtattcGTACTTACCCATTCATACGCATTGCTTTACAACTACTCAACACTCAACACATCATGCAAGATCTAGTCGTCAGTGGAAGATCAAacgtctttttattatttatttttatttttatttttacaatatatgtCGTGGTGCACTTGAAGGATCTCTACACTCACTTACAAACGGTGTTTCACTGCCCTAGACTTTAGGAACTTCCAGAAAGATGCACTGAAGTTtagaaataactctataatTCAAATCAAATCTTGGGGCCAACGAACCctgatttgtttttctttccacCAGCAATGTGGTTTGACCCTTTGTTTCTAGTCTTTTGTGTGCAGTCAAGGGTCTTTTTAAAGCTGAACTTCATACATTCAAGGTATCtacatatatatctatatatatatataaggttgCAGCGAGCCACCATGCCAATGTAATCATGTAATCTCTTACAATGCTTTGTCTGTCAGTCGGGACCAGGCCTCAATTGGAGGTGATTTCTTTAACATGCGTTTTATGTTGAgactctctgttttctctgtactttttgtttgtttttttgttaatgttttgaAGGTAACTCTTACATACACGCTCATTCTGATCATATCAGGGGGTTGTTGATGTGCTTTGTCTTGGTGAAGAAGCTAGCGAGAGGGAGCAGTAGGGTAGCTACGCTATTTTGAACGCGTCCACACGTCCGCCGATGAccggttttaatgttttaatgggGATAATCTTTCTGACTGTTGATTGGTGTTGAGTGAATAGACCGTATCCAGAGTGCATGATActtatatatgatatgatatatgatgtaCTTGAGGCCTGACGCTCTTGTCTGAGAAGGAGGAGTTAGTGTGCCTAATGCTGCAGGTTATATAGGAGGTATAACATCATCAGttcaaatatatgtttaatattaaactattgCCATTATTGTTTTAGGTGCAGATGCCTATATGACAACGTAAAGACACTACGTTTGGCACCTCTCGAGCAAACTGCCATCCAATTTTGCTCTTGATGCAAAACCTCTCTTTTTGTACACCtcgaaagagaaagaaatgacTTCTTTATGCTATTATTCTctcgctctgtgtctctttaaGGAGATTCCACTCACAGCATGGGCTATCCCAGAGTGTCTGTCCGTCCATCACAAGTTACAGGGAATTGGAGAACAAGTTTTACAAATATGATCAGTagttaaagtcttttttatgACGAGGACTTCAGAGGTgttgagagattttttttttaaaaggtcaaACTTGCTCTTACCTGCCATGCTCTTCTCTGACGTACAAGGGGCTGAAGACTAGTCCCTAGTCCAGTAGTGAACCGGGCACTCTGCGTCACCACGCCCGGAGTCAGAGAATTTACACCATCAGAGCCTGTGTGTATGCACGCATGCgtgaatgtatgtatgtatgtatgtgtgtatgagaatgtgtgtgtgtgtgtgtgagactgttgtgtattttagtgtttacaGCCCCactccccctctccctctcagACCTGCCTGTGGGTCTGCCTACTGCCTACTGTCTCCAAATCAGAGTGGGACTGTGGACTCCATCCAAATCAGTGCCCAGCGGAAAGAAAGCATAGACTACCATGCAATTtctcctaaaaaaacaaaacaaaacaaaaaacaaacaaaccaaaccacacctCCCTCTCCTCCCTCCCCGAATCCTGTACTGTTGTactgtgttgtaaaaaaaaaacacatttacacactgtatGACACACTGTATGTTAATGTATCGTTCAGTGGGGGGCTATGATGTACATGGCACAATTGCTGAAAACgtgaataagaagaagaagaagaataaactTGAGAGACGAGAAGTATTGTAA

Function

symbol description
scn8aa Enables voltage-gated sodium channel activity. Acts upstream of or within several processes, including mechanosensory behavior; motor neuron axon guidance; and sodium ion transmembrane transport. Predicted to be integral component of plasma membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in axon. Is expressed in heart; nervous system; otic vesicle; and trigeminal placode. Human ortholog(s) of this gene implicated in benign familial neonatal epilepsy and developmental and epileptic encephalopathy 13. Orthologous to human SCN8A (sodium voltage-gated channel alpha subunit 8).

NR:

description
PREDICTED: sodium channel protein type 8 subunit alpha-like isoform X2

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007638 mechanosensory behavior biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0008345 larval locomotory behavior biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0001518 voltage-gated sodium channel complex cellular_component
GO:0005248 voltage-gated sodium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022676738.1 True 8871 mRNA 0.47 27 5121999 5224651

Neighbor

gene id symbol gene type direction distance location
LOC103038301 fignl2 coding downstream 98209 4989760 ~ 5023790 (-)
LOC103043059 LOC108433165 coding downstream 148028 4909232 ~ 4973971 (-)
dtx3 dtx3,LOC107695821,LOC107745454,LOC107571783,LOC107716192 coding downstream 236115 4873143 ~ 4885884 (-)
LOC103042747 adcy6b,LOC108433131,LOC108276068,LOC107716189,LOC107745452,LOC107695824,LOC107668560 coding downstream 401346 4632842 ~ 4720653 (-)
LOC103036111 tbx18 coding downstream 563861 4546351 ~ 4558138 (-)
LOC103043672 dip2ba,LOC108433219,LOC107745461,LOC107687534,LOC108275871 coding upstream 18367 5243018 ~ 5340493 (-)
atf7 atf7,LOC107563644,LOC107716199,LOC107695816 coding upstream 126955 5351606 ~ 5410774 (-)
asb8 asb8,LOC107745463,LOC107681993,LOC107570421,LOC103141183,LOC107563629 coding upstream 192202 5416853 ~ 5425221 (-)
larp4 LOC108432190 coding upstream 206036 5430687 ~ 5455216 (-)
LOC103041955 NA coding upstream 232154 5456805 ~ 5474197 (-)
G129451 NA non-coding downstream 11962 5109631 ~ 5110037 (-)
G129439 NA non-coding downstream 43144 5065010 ~ 5078855 (-)
G129432 NA non-coding downstream 136784 4985010 ~ 4985215 (-)
LOC111194056 NA non-coding downstream 218594 4744420 ~ 4903405 (-)
G129405 rnd1,rnd1b,LOC103037018,LOC107571475,LOC107695736,LOC107577993,LOC107745453,LOC107668562 non-coding downstream 287757 4830329 ~ 4834242 (-)
G129503 NA non-coding upstream 3394 5228045 ~ 5228792 (-)
G129574 NA non-coding upstream 120129 5344780 ~ 5350103 (-)
G129581 NA non-coding upstream 202701 5427352 ~ 5461752 (-)
G129738 NA non-coding upstream 456159 5680810 ~ 5682002 (-)
G129749 NA non-coding upstream 499509 5724160 ~ 5724624 (-)
G129376 NA other downstream 528235 4553615 ~ 4593764 (-)
G129260 hbs1l,LOC107756395,LOC107701737,LOC107723734 other downstream 1226583 3864883 ~ 3895416 (-)
LOC103029128 LOC108432343 other downstream 1419024 3665611 ~ 3702975 (-)
LOC103031137 LOC107572773 other downstream 1533084 3569978 ~ 3588915 (-)
G129147 rnf41,LOC107701697,LOC107756409,LOC107723732,LOC107671855 other downstream 1868828 3250508 ~ 3253171 (-)
G129514 NA other upstream 98045 5322696 ~ 5328697 (-)
G129723 rps26l,LOC103039794,LOC108433306,LOC107563646 other upstream 374622 5599273 ~ 5601455 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other upstream 519342 5743993 ~ 5784566 (-)
LOC103044130 tac3 other upstream 970023 6194674 ~ 6201901 (-)
LOC111194060 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 other upstream 1814279 7038930 ~ 7056722 (-)

Expression


Co-expression Network