G134070


Basic Information

Item Value
gene id G134070
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 23738935 ~ 23758995 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU181346
atttggaagaaatgtctgtaatttatagaataaaacaacaatgttaattttactcaaacatcagaaatcaaagtggtcttttaatttttttctgagctgtatgTCTACCCCTGAGTAATCATGCCACATACAAACCATCTGCAAAAACAGAAATTCACTTATTGTTTCTCTCCCacatccagacacacacacacacacacacacacacatccagacACTTCCCTCCTCCACCATCTGGGTGACGCTGAAAGAGTGGGAGCTACTTCGGCTGCTTTCCAATTGCCTCTGTTGTTTCTTTTCCTGTCTCAGTTTGGGGATAAAGCACTGAGGATAAAAAAACTCCCCGCTCTTATTGTATTTCCCCACCGTACTACATGTTGCACTTGTTCCAGTACGATACGCTGACTCTGGGCCGAGCTGTTCAGATCCGGATTCCTCCTCGTCGTCATCTTCCTCCTCatcatcttcctcctcctcatcatcctcTCCTTCATCCACCTCACTGTCAGAGTACTTCGCAGCATGTCTTGTTCCGTTGACTCTGGACTGTAAGGGATGTGCCATCAGCCTCTGCAGCTTTCTCTCATACAAAGCCCTAGTGCTgcCTACAATTGGTCCGGCTTTAACTCCATACCGcagcagttgtttttttaactgatcATCAGTTAATGCGCCCAAGTCCACCATGTCTGCCTCCTCTTCttgctcttcctcctcCAAGCGCTTTCCTCCCGTCCTCCAGATAAACAACAGAACAGCAAAATGGGTCTAATCGCGTTTT
>TU181347
GGGAAGATAATAAATGTCACATCAAATTCATTTtcaatcacatttatttattaatttagaaataaagcATCACTACACAAAACATGGGTCCCCTTTGCTCTCCAATCTGGAGTACATAGGTTGATTAAGGCAGAATGGATTAAAGAAGACAAAACGAACATGGCTTTAGGATGGCAAAACACGTCTATGCATAAAAATATCTTATTAGACTAAACCACATTCATCCAGCACGTCATCACATAAAACCAACTTTGCAGCCTTAGCATTTATAAGGAAATTTGTTGATGAGAAGTCCAAACCACAGAAGCACCACAGATTTTCCCTAGGCAGCAACAGTTTCACTTGTGCTTACATCCTGAGAACTTGTGATGAGAGTGAGCTGATCAGGGATCGGCTGCTCGCTGAGACTGTCCAACACGGCACTGAAAGGGTTTTCCAGTCCGTCTTCCATTAATATGTATATGAAACAGAGGAGGACAGCCACTAGGAGAAAGACGATGATCTGCACCCACAGAGGCAGCAGATGCTGCTGGATCTCTCGTCTCTCCAGCGAGGCAGGACTCAACGGGGTTTCTGTGTATTTGAACTTTACAGGACGACCTGCTGCCCCCTTAATAGATCGCCTCTTAGTAGCAGTGATTCCAGTTGGTGTAGTTGCTGTGTCTGGGAAGAGCTCCATCAGAATATCAGTCGCTGGTTCAGCTTGTTTCTGATGGGGCAAATACTCAGGAGTCAGATATAGAGTTGTATTGGTCACGGTACTCCCGTTGAGGCCTTGAAGATCccactgcacCCTGCTGGCCACTGGCGTCTGGCTAAATCTCCTCTCAGTCTCTGCAGGCTTTGACCGAGGACTCAGCCTGCTCTCAATCT
>TU181349
GGGAAGATAATAAATGTCACATCAAATTCATTTtcaatcacatttatttattaatttagaaataaagcATCACTACACAAAACATGGGTCCCCTTTGCTCTCCAATCTGGAGTACATAGGTTGATTAAGGCAGAATGGATTAAAGAAGACAAAACGAACATGGCTTTAGGATGGCAAAACACGTCTATGCATAAAAATATCTTATTAGACTAAACCACATTCATCCAGCACGTCATCACATAAAACCAACTTTGCAGCCTTAGCATTTATAAGGAAATTTGTTGATGAGAAGTCCAAACCACAGAAGCACCACAGATTTTCCCTAGGCAGCAACAGTTTCACTTGTGCTTACATCCTGAGAACTTGTGATGAGAGTGAGCTGATCAGGGATCGGCTGCTCGCTGAGACTGTCCAACACGGCACTGAAAGGGTTTTCCAGTCCGTCTTCCATTAATATGTATATGAAACAGAGGAGGACAGCCACTAGGAGAAAGACGATGATCTGCACCCACAGAGGCAGCAGATGCTGCTGGATCTCTCGTCTCTCCAGCGAGGCAGGACTCAACGGGGTTTCTGTGTATTTGAACTTTACAGGACGACCTGCTGCCCCCTTAATAGATCGCCTCTTAGTAGCAGTGATTCCAGTTGGTGTAGTTGCTGTGTCTGGGAAGAGCTCCATCAGAATATCAGTCGCTGGTTCAGCTTGTTTCTGATGGGGCAAATACTCAGGAGTCAGATATAGAGTTGTATTGGTCACGGTACTCCCGTTGAGGCCTTGAAGATCCTGCTAAACATACAAAACTGACATTGTAAAAACAAGTTCTCTCACTTACACAGGCCaaaacagtctgtaattaaTAACCAAACAAGCTAGGAGTTCAGATGATGCCCATATGTTGTTTAATATtgattactgacccactgcacCCTGCTGGCCACTGGCGTCTGGCTAAATCTCCTCTCAGTCTCTGCAGGCTTTGACCGAGGACTCAGCCTGCTCTCAATCTCCTCCACCATCTGGGTGACGCTGAAAGAGTGGGAGCTACTTCGGCTGCTTTCCAATTGCCTCTGTTGTTTCTTTTCCTGTAATTCACAGGTGTCCAGATCAGCCACACCTACAAACATGACTAGCAAATGCGTACTCTACACAGCCAAAAAACAACATGATCATTAACACATGGAAAAGCAAAGCAATGAGCATCCACTACATCACACTGAACTATTCATTTCCCACCAAGAACACCTGTTAATTCCATTTATAGCCCGACAGAACATCTGTGCAATAAATATGGTGCTTTCCATGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181346 False 781 lncRNA 0.45 6 23743804 23758995
TU181347 False 873 lncRNA 0.45 4 23738935 23741752
TU181349 True 1305 lncRNA 0.44 4 23738935 23744325

Neighbor

gene id symbol gene type direction distance location
LOC103023698 LOC108435245,LOC108425699,LOC105906847,LOC108435246,LOC103365807,LOC105923626 coding upstream 15924 23717064 ~ 23723011 (+)
LOC103026317 LOC108435243,LOC108276480,LOC107672057,LOC107737654 coding upstream 32944 23671556 ~ 23705991 (+)
naca naca,LOC106571941,LOC100286403 coding upstream 85032 23641946 ~ 23653903 (+)
prim1 prim1,LOC107741309 coding upstream 107611 23624230 ~ 23631324 (+)
LOC103027302 rnd1a,LOC103027302,LOC108435239,LOC105906806,LOC107657046,LOC107737660,LOC107563659 coding upstream 136124 23586018 ~ 23602811 (+)
uba3 uba3,LOC108435248 coding downstream 54200 23813195 ~ 23832512 (+)
LOC103021840 LOC108436304,LOC107741317,LOC106519302,LOC101477062,LOC107560879 coding downstream 75359 23834354 ~ 23857902 (+)
LOC111194121 NA coding downstream 191906 23950901 ~ 23953570 (+)
LOC103045952 idh3g,LOC108436344,LOC108275983,LOC108425561,LOC108276129 coding downstream 410410 24169405 ~ 24186748 (+)
LOC103045451 avpr2,LOC108436342 coding downstream 483505 24242500 ~ 24295274 (+)
G134052 tfip11,LOC107741308,LOC107737658,LOC107671994 non-coding upstream 104344 23632470 ~ 23634591 (+)
G134050 NA non-coding upstream 132948 23605746 ~ 23605987 (+)
G133961 NA non-coding upstream 464212 23274312 ~ 23274723 (+)
G133947 NA non-coding upstream 676384 23061277 ~ 23062551 (+)
G133933 NA non-coding upstream 725253 22949920 ~ 23013682 (+)
G134083 NA non-coding downstream 45255 23804250 ~ 23806541 (+)
G134085 LOC108435216,LOC108275538,LOC105013740,LOC104924681 non-coding downstream 56921 23815916 ~ 23817235 (+)
G134204 NA non-coding downstream 362412 24121407 ~ 24122160 (+)
G134197 fam120c,LOC108436345,LOC107741318,LOC107657034,LOC107562475 non-coding downstream 382075 24141070 ~ 24147795 (+)
G134225 NA non-coding downstream 469562 24228557 ~ 24229096 (+)
LOC103037602 LOC108435244 other upstream 68979 23655148 ~ 23669956 (+)
LOC111194020 NA other upstream 1331684 22405498 ~ 22407251 (+)
G133509 NA other upstream 2664884 21069316 ~ 21074051 (+)
G133503 NA other upstream 2720958 21011730 ~ 21017977 (+)
G133502 NA other upstream 2723019 21009907 ~ 21015916 (+)
G134236 sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474 other downstream 564500 24323495 ~ 24336745 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other downstream 698881 24457876 ~ 24480372 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other downstream 730910 24489905 ~ 24503010 (+)
LOC103036968 LOC108436332 other downstream 846654 24605649 ~ 24661534 (+)
G134426 NA other downstream 862913 24621908 ~ 24632130 (+)

Expression


Co-expression Network