LOC103021840 (LOC108436304,LOC107741317,LOC106519302,LOC101477062,LOC107560879)


Basic Information

Item Value
gene id LOC103021840
gene name LOC108436304,LOC107741317,LOC106519302,LOC101477062,LOC107560879
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 23834354 ~ 23857902 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007249962.2
TTCTGTCTCTTTCACAGCAACCCGGAGTAAATGAGGAGCTCTGAGAGAGAAATCGTTCAGCTTCTGGACTCTTCTCTGcttttcttgctttttcttCATTGTAGTTTTGTTCAGCAGAtacaggaggaggagaaggagccCGGGCTGTAAACGGGGCGGGACTGAGTTAGACTCACTCAGTCTGAAGAACAGGTGAGcaggtgagaagcagcagcagcagcaggtagagagagagagcaatactCACAGTTTCTGTGGcgcgttttttttatttattttgtttcgcTTAATTATCGCTTTATAAAAAGACAGGCAGCTATATACAGATATTCTGCGGTTTCCTCTTTTATTTTCCTGCTTCCTCCGAATGGATTTTAaagtattaatgaaattaaAGGTGATTTATCGTGGATTTACAgtgtttgaagaaaaaaaaaacactctcagCCTCACAATGACCAACACTGACCAGACTCCCCCCGACCAGCACAGACTCTGAGGGGAAAATACCCGGATATTAACACACCTATTTCTTCAGCAAATTAACTTTAAGATGAATGCAAAGATCATTCTAAGAggtctgctgctgctctgtgtgtggCTCCTCTGCGCTCAGTCAGTGTCCAGCGGCAACCGAAGCTCCAGGGGGCAGACAGtccggTCTGAAGTGACCCCGGGGACGTGTGAGGTGGTCGCTGCTCGGCGCTGCTGTAATAAGAATAAGATTGAGGAGAGGTCTCAGACGGTTAAGTGCTCATGCTTGTCTGGGCAGGTGGCGGGGACTACCCATGCTCGACCTTCATGCGTGGATGccTCCATAGTGCGTTTGAAGTGGTGGTGTCAGATGGAGCCATGTTTGGAGGGCGAGGACTGTAAAGTTCTTCCTGACCTCACCGGCTGGTCCTGCATCTCAGGCAACAAAGTCAAAACCACCAAGGTGACACGATGACACGGCAGTGAAAGGACAACAAGTCAACAGATAAAGTGACACTATATTATATGGACACTGAAAAAGTGAGAACTCATGGTGATCATAAAGCCCTACCAGTGTAGGTACTGCAGCTGGTCTGAAATCAGTACTGCAAGTATTGTgcataaacacaaatacacgcacacacacacacatatacacacaagcacatataGAGTCTATATGAAGGACTTACTGTACAGTAGACATACCAAAGCTATTTCACACCAGCAGGTTAACAGTGTATCTCACCATGTTTGCAGCGTTTAATGCTGCTCGCCGTGTTCTGATTTTTAGGTGTCTCTTTATTTCTTGTGAAATCCAGCTATTGCACCATGTGTGACACATTTTTGGGTAATACATGATTCTATTACCGCTCTCCCCCTCTCGCTCTAAAGCACAgccatattatattaatttgagATTATGCTGGAGTTCAGCAGCTCCCCGCCAGGCcatgtctgctgctgctgctgctgcttcttctgaGTTATGACATCACACTCGCACTCACAGTACAGCCTTTCTCTGACTCTGGCAGCCCTGAGACAAACATGCAAATGCTGAAACATTggcctaacacacacacatacacacacacacccacaagcCCTTGTTATTTTCTACCTGACTGGTTTGACACTTCATCTGCAATCCTGCGAAAGCTACTATTCATAGAAATCTACTTGGTATATACATGGATATTTATATGTACACTGATCatatcaaccataacattaacaccaccttcttgtttctacactcattgtCCATTTTTCTCCACTGAGCACtttgtaattttataattacaCTCTaaagtcctgtatctgtttctctgcatactttattatcctaaTTTCACCCTGTCTATTCCTcgatggtcaggaccccacaggatcgCCCAGCTCAcaggtcattctcagcactgcggtgagagtgtgttgtgtatgtgc

Function

NR:

description
PREDICTED: protein FAM19A4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007249962.2 True 1923 mRNA 0.45 5 23834354 23857902

Neighbor

gene id symbol gene type direction distance location
uba3 uba3,LOC108435248 coding upstream 1842 23813195 ~ 23832512 (+)
LOC103023698 LOC108435245,LOC108425699,LOC105906847,LOC108435246,LOC103365807,LOC105923626 coding upstream 111343 23717064 ~ 23723011 (+)
LOC103026317 LOC108435243,LOC108276480,LOC107672057,LOC107737654 coding upstream 128363 23671556 ~ 23705991 (+)
naca naca,LOC106571941,LOC100286403 coding upstream 180451 23641946 ~ 23653903 (+)
prim1 prim1,LOC107741309 coding upstream 203030 23624230 ~ 23631324 (+)
LOC111194121 NA coding downstream 92999 23950901 ~ 23953570 (+)
LOC103045952 idh3g,LOC108436344,LOC108275983,LOC108425561,LOC108276129 coding downstream 311503 24169405 ~ 24186748 (+)
LOC103045451 avpr2,LOC108436342 coding downstream 384598 24242500 ~ 24295274 (+)
LOC111194043 NA coding downstream 684344 24542246 ~ 24550608 (+)
fkbpl NA coding downstream 940623 24798525 ~ 24801627 (+)
G134085 LOC108435216,LOC108275538,LOC105013740,LOC104924681 non-coding upstream 17119 23815916 ~ 23817235 (+)
G134083 NA non-coding upstream 27813 23804250 ~ 23806541 (+)
G134070 NA non-coding upstream 75359 23738935 ~ 23758995 (+)
G134052 tfip11,LOC107741308,LOC107737658,LOC107671994 non-coding upstream 199763 23632470 ~ 23634591 (+)
G134050 NA non-coding upstream 228367 23605746 ~ 23605987 (+)
G134204 NA non-coding downstream 263505 24121407 ~ 24122160 (+)
G134197 fam120c,LOC108436345,LOC107741318,LOC107657034,LOC107562475 non-coding downstream 283168 24141070 ~ 24147795 (+)
G134225 NA non-coding downstream 370655 24228557 ~ 24229096 (+)
G134233 NA non-coding downstream 398969 24256871 ~ 24257103 (+)
G134234 NA non-coding downstream 459973 24317875 ~ 24322181 (+)
LOC103037602 LOC108435244 other upstream 164398 23655148 ~ 23669956 (+)
LOC111194020 NA other upstream 1427103 22405498 ~ 22407251 (+)
G133509 NA other upstream 2760303 21069316 ~ 21074051 (+)
G133503 NA other upstream 2816377 21011730 ~ 21017977 (+)
G133502 NA other upstream 2818438 21009907 ~ 21015916 (+)
G134236 sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474 other downstream 465593 24323495 ~ 24336745 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other downstream 599974 24457876 ~ 24480372 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other downstream 632003 24489905 ~ 24503010 (+)
LOC103036968 LOC108436332 other downstream 747747 24605649 ~ 24661534 (+)
G134426 NA other downstream 764006 24621908 ~ 24632130 (+)

Expression


Co-expression Network