G134371


Basic Information

Item Value
gene id G134371
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 24525092 ~ 24525572 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU181758
ggagataacagtgtacagttcttgcagagcgttagcattagcactgggtgctacatacactgctattatgtagacgctgctaagctctctgggcaggtagaatggcctggctctgactacagcaaactccaccagcggcgagcagtagctggagatcagcgcagcgttgttacaccatgctgtgttgatgtaaacacacaccccacctccacGTACTTTGCCCGAGAGGCCGGCGTCGCGGTCCGCGCGGTAGCTTA
>TU181759
ggagataacagtgtacagttcttgcagagcgttagcattagcactgggtgctacatacactgctattatgtagacgctgctaagctctctgggcaggtagaatggcctggctctgactacagcaaactccaccagcggcgagcagtagctggagatcagcgcagcgttgttacaccatgctgtgttgatgtaaacacacaccccacctccacGTACTTTGCCCGAGAGGCCGGCGTCGCGGTCCGCGCGGTAGCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU181758 True 257 lncRNA 0.55 2 24525092 24525572
TU181759 False 257 lncRNA 0.55 2 24525092 24525572

Neighbor

gene id symbol gene type direction distance location
LOC103045451 avpr2,LOC108436342 coding upstream 229818 24242500 ~ 24295274 (+)
LOC103045952 idh3g,LOC108436344,LOC108275983,LOC108425561,LOC108276129 coding upstream 338344 24169405 ~ 24186748 (+)
LOC111194121 NA coding upstream 571522 23950901 ~ 23953570 (+)
LOC103021840 LOC108436304,LOC107741317,LOC106519302,LOC101477062,LOC107560879 coding upstream 667190 23834354 ~ 23857902 (+)
uba3 uba3,LOC108435248 coding upstream 692580 23813195 ~ 23832512 (+)
LOC111194043 NA coding downstream 16674 24542246 ~ 24550608 (+)
fkbpl NA coding downstream 272953 24798525 ~ 24801627 (+)
trnan-guu_2 NA coding downstream 279230 24804802 ~ 24804873 (+)
ccdc115 ccdc115 coding downstream 286325 24811897 ~ 24814853 (+)
LOC103033727 LOC103033727,LOC108436326,LOC108276432 coding downstream 289797 24815369 ~ 24820684 (+)
G134370 NA non-coding upstream 1311 24523399 ~ 24523781 (+)
G134369 nsfl1c,LOC107741325,LOC106566439 non-coding upstream 14324 24504367 ~ 24510768 (+)
G134349 NA non-coding upstream 40254 24484023 ~ 24484838 (+)
G134359 NA non-coding upstream 87219 24435113 ~ 24437873 (+)
G134334 arhgap4,LOC108436338 non-coding upstream 160617 24361275 ~ 24364475 (+)
G134430 NA non-coding downstream 128603 24654175 ~ 24655848 (+)
G134444 arfgef2,LOC108436330,LOC107737629,LOC107562465,LOC107671990 non-coding downstream 189941 24715513 ~ 24719388 (+)
G134434 pard6g,LOC108436329,LOC107562464,LOC107702404,LOC107754812,LOC107581070,LOC107672872 non-coding downstream 226353 24751925 ~ 24756479 (+)
G134462 NA non-coding downstream 278487 24804059 ~ 24804796 (+)
G134475 NA non-coding downstream 313733 24839305 ~ 24839935 (+)
LOC103040021 trpc4ap,emp3b,LOC107741324,LOC107656986,LOC107562468,LOC108436335,LOC107741326,LOC107562456,LOC107657024,LOC107671979,LOC107737636,LOC107560919 other upstream 22082 24489905 ~ 24503010 (+)
LOC103040548 myh7b,myh7bb,LOC107672010,LOC107737633,LOC107657025,LOC107741323,LOC107562469,LOC107560867 other upstream 44720 24457876 ~ 24480372 (+)
G134236 sps2,ssr4,LOC107560911,LOC108436301,LOC108275956,LOC107671948,LOC107737640,LOC107741342,LOC107562474 other upstream 188347 24323495 ~ 24336745 (+)
LOC103037602 LOC108435244 other upstream 855136 23655148 ~ 23669956 (+)
LOC111194020 NA other upstream 2117841 22405498 ~ 22407251 (+)
LOC103036968 LOC108436332 other downstream 80077 24605649 ~ 24661534 (+)
G134426 NA other downstream 96336 24621908 ~ 24632130 (+)
trnae-uuc_18 NA other downstream 285357 24810929 ~ 24811000 (+)
smim4 smim4 other downstream 660244 25185816 ~ 25190306 (+)
LOC103026913 flna,LOC108436314,LOC101154674 other downstream 711899 25237471 ~ 25296336 (+)

Expression


Co-expression Network