LOC103036864 (ccdc187,LOC108433778,LOC107570908,LOC107708822,LOC107718813,LOC107656553,LOC108276045)


Basic Information

Item Value
gene id LOC103036864
gene name ccdc187,LOC108433778,LOC107570908,LOC107708822,LOC107718813,LOC107656553,LOC108276045
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 8044125 ~ 8089672 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007246834.3
GCTGTCTGGTGGAGAAGTTTGTCCGTGCTGGCTTTCCATCCGCCCCCTGCAGCTTTGTTTCATTGACAAAAACAGGGAAGAGTTTTAACCTGCTGCGGGTTTCAGAGCGCGCTGTTGTCGGAGACTCGCTTTCATCGCGTTTAAACTCGTGACTGGAGCCGCTCGCTCTCACACGGAGAGAGACCGGGGCTGTACAGCGGGTTTATACCGGGTTTAAACAGCCACCGGCCGGGCTGTTCAACAGGTAGCCCCGCCGCTGCTGCTGATCCAGGACTCAGGACACAGTTCAGCCGGGGATCCGCGGTCAGCTGGAGTTAAGAGCTGTGAGCTGGTCTGTGGAGGGGAACAGTCGGTCTGTTTGAGTTCTGACTGTGCATCCCTAAACAAACCCCTCCAGGTGGTCGACCTTAGTTTTGAGTGGTTTTGCTGGGGCCATGAGGAGCCATGGCGGAGCTGGAGGTGGATCAGACTAATCTGCCCAGGGTTCAGGAGGTGTGCCAGTGTTTTGCGGTGCTGGAGGATGGAGCACTAGCACATAACTTACAGGAGCAGGAGATTGAGCAGTACTACAGCTCAAACGTGCAGAGGAATCAGCTGGTTCAGAATGACATCCGTGTAGCCAAGAGGCTGCAAGATGAGGAGCAGGAAAGAGCTTACACCCTCCAACGCCAGTCTACACAGCAACTggAAGAGCAGGACTCTGAGTATGCGCGCAGGATTCAGGAGGAGCTGCAGCGATGTGCTGAGGAAACTCTGAGGAGGGAAATAGAAGATGAGGAAATAGCAAAGCGCATCCAGGAAGAGGAAGAGCTGCTTGTCAGACAGCGTTTAGGGTGCCAGAGAACAGCTGATGCAGAGAACAGCAGCTTACCcaccacacatcacacacttCAGCCTGAGCGCCCACTCCTCAGTGAGGAGGAAGGCCAATATGACTGGGCATCACACAGACGGGCCTGCTCACCTTCTCCCTCCACCTCAGACTATGAGGAGGACCACCCTCAACACAGGGGGTACCATTCTGAGTACCGCAGAGGCCATGTCGAGCAGAGACAGCGGCCTGGGTGTGACCCGCCATGCAGAAACTCTGCTGTGCGGCGGAGCGACAGGAGCTCTACAAGCCAGAGCGGTCACCTGGGGCAAGGAAGCAGGAGCTCTATAAGCCAGAGTAGGCAACTAATGCAGGGTAGCAGGAGCTTCATAAGCCAGAGCAGTCAATTAGGACAAAGCTACAGCTCTGTAGACCAGAGTAATCAATTGAGACAGAAAAGCAGGAGCTCTACAAGTCAGAACAATCAAATGAGGCAGGGCAGCAGGAGTCAATTTGAACAAGACACCAGGAGCTCTATAAGTCAGAGCAGTCAATTGGGACAAAGTTACAGCTCTGTAGACCAGAATGGTCAATTGGGACAGAACAGCAGGAGCTCTCTAAGCCAGAGCAGTCAAATAGAGCAGGACCGCAGGAGCTCTGTGAGCCAGAGCAGTCAAATAGAGCAGGACCGCAGGGGCTCTGTGAGCCAGAGCAGTCAAATAGAGCAGTACCGCAGGGGCTCTGTGAGCCAGAGCAGTCAAATAGAGCAGGACCGCAGGAGCTCTGTGAGCCAGAGCAGTCAAATAGAGCAGGACCGCAGGAGCTCTGTGAGCCAGAGCAGTCAAATAGAGCAGGACCGCAGGAGACCTGTGAGCCAGAGCAGTCAAATAGAGCAGGACCACAGGAGCTCTGTGAGCCAGAGCAGCAGTTCTGGGCGCTTTCAGGGTGGATGGGGTGACGTTGTCAGGCTCATAAAGAACGACTTAAGCGAGCAAGGCTACCTAAGTTGCAATTCCGACGACGAACTCTTCGAACCGGTCTATCGACTCGAGAGAATGCTCAGTCAACGCCAGCAGATCCCAGATCAGTTTTGTGAGCGTGAGGTTAGGTTGAGCCGCCATAGCAGTGTGAGGGAGGCTTCTGGAAGAACCTGGCAAGAACGTGCTATTGGTAGGACACAAAGCTTCAGGAGCTCAACACGGAGTGATAGCAGAAGTGTGAGGTCGGAGGGCAGGCCAGTGAGACGCTATAACAGCAGCTGTAGCGACTCCAGGTCCGGAGATAGCAGGAGACACGTCCACTTCCAGGATGAGTCAAGGCGCCGTAATGGTTATAGTAGCGAACAAAGAGCTTTTGAAGGTGGAACGAGAGATCGAGAAGTAGGGAACTACACTGTGAGTTCATATCCAGTGAGAACTCAAAGAGGTCTTGATCAGGTTTACCCCACCACTGCAAATGGTGACCAGTATCAGTCTCAGGCTTCTCATCAGAGCAATCAGGTGAGAAACGTATACCAAAAAGATGTTCACGGAAACAGAAGAGCACCAATAGTGGAGGTGAACCAGCATCATAGCCACAATGGCTTCCCACATGCTAATGAAAACCATTCCTTTGAAAGCTCCCTCCTGCAAGAGTCCAGAGTAATACAGGAGGAGGAGAATGAGGAGTTCAGACAAGGCAGCTGCAGGGGTCAAAGAGAGCCCAGGCGAAGAGCTCACTCTCTTAGGGAGGATCGAAGATGGGAAGCTAGGGATAGCAGACGTTACAGTGGGAACTACAGGGAAAGACGTGTTCAGCAGGGtaatgtggaggacagctcaagTACTGAAGAGGAagagatggagagggagaggaggagggaggagagaaGGGCCCGGAGACTTCCCCAGCGCAGTCTCAGTCTGGCCTGCGGAGGGCGCTCTTCCAGAGCAGGTCCCGCGCTGAGGAGGAATGGAGCCTCTCTGGATATGGGGGAGCTGGAGCAGGTCCTGCTGGATGAGGAGTTGGCTCGAAGGCtacaggaagaggaggagacgTTGCTCAGAGGCGATCCTCAGTCAACCCCAGTGTCAGCTCTCCACAGCCCTTACCCAGAAGGAGACTTCAGAGTAGCTCAGGTTGCTCAAGATGAGGAGATTGCACGCTTCATGCAGAAGCAGGAGATAAAGGCAAAGCGGCAGTCTCGAGAGCTGGAGGGCTGTGGGACGGGGAGGCAGTACAGAGAGATGACGAATGATCCATATGATGATAGAGCTGCATGTGGCAGACAGgtgcagagagagagactggactCAGAGGGGCTTCTCTCTCCCACTGAGGATTTCTCCCCAGAACATCAGCCCCCTAATCCAATCGCCATGGCTGCGCAGCAGCAGCCGTTCAGGAATATAGCTGAGGAACTGGATCCAACCTTTCACCGGAAAGAGAACATGCAGGCTGGACCCAACATTTCCGGGCCCTGCCAAGTCCAAGCCACTCCACAGACAGGCTCATGCGGCGTCACGCAGGACCCTGCATTCGTTCAGCCCACCAAGCGGCAAAACGACAAGCCAGTGCGAGTAAAGACCAAAGAGAAGAAGGAGAACACAAGACCAAAGGAGAACTGTAAGCAGCAGTGATGCTGTGATGTTGTGATGCTGGCAGAGCTCGAGGTCTGTTTACAGTGGGGAGGACTGGGTTAACACGTGAAGACAGCTCACCTACTTATTCAGTAGATAACAGGGTCATGTTTCTGAGGGGTTTCCCAATCCTTTACTTCCATTTTCTCTGGTAGATGTGGGGAAAGTTTACCCTTGAGGTAATAATGTAGTAAATCTGGTACATTAGAGATCAGGCTGCAGTCGTGTGAAAGGGAGACTCCGTCGGGAGACTAATCTGATTAAAGTTCATTTACTGTGTTGATAATATCCCAGCGTACTTTTTGTATTagtcatttttcttttcattttttatttgttacgcCTTGCACGTGTGTGCAGGGCCGGGGCTGGGCTCGTGCCACTGGGAATGCGCTGACTAATTCCGCTCTGAGTTCTAGTTTTGCTTACTAGAAAGCAAAACTATCAGTGTCTTTGTGAACCGTAGCGTAGAGCTTCTGCATGCCACGCCTCAGTTGCATTCCTAGAACTCCCTTTCTGAGTCACGTTGAGGAGATTATATTGCACAAAAtctctgtttaaaatgaaatttcTTAACCACAAACGTAGTTTCCCTTCTGCTTGCTTTTCTGCATTATTCCTGAAGCGTTTCCCATAAATATTATTACTTCTCGTCTACAAAAAAGCCTGTTTTGTCACATTGTAtagtttgtataaaaaaaaagaaaaaacttgtaTTTGACTTCCTGCACGAGGCTTTCGGTTTTTGTGTGCTTATTTATgatataaaactgaataaataaaaaaaaactaaaatgaa
>XM_007246835.3
AGTTTGTCCGTGCTGGCTTTCCATCCGCCCCCTGCAGCTTTGTTTCATTGACAAAAACAGGGAAGAGTTTTAACCTGCTGCGGGTTTCAGAGCGCGCTGTTGTCGGAGACTCGCTTTCATCGCGTTTAAACTCGTGACTGGAGCCGCTCGCTCTCACACGGAGAGAGACCGGGGCTGTACAGCGGGTTTATACCGGGTTTAAACAGCCACCGGCCGGGCTGTTCAACAGGTAGCCCCGCCGCTGCTGCTGATCCAGGACTCAGGACACAGTTCAGCCGGGGATCCGCGGTCAGCTGGAGTTAAGAGCTGTGAGCTGGTCTGTGGAGGGGAACAGTCGGTCTGTTTGAGTTCTGACTGTGCATCCCTAAACAAACCCCTCCAGGTGGTCGACCTTAGTTTTGAGTGGTTTTGCTGGGGCCATGAGGAGCCATGGCGGAGCTGGAGGTGGATCAGACTAATCTGCCCAGGGTTCAGGAGGTGTGCCAGTGTTTTGCGGTGCTGGAGGATGGAGCACTAGCACATAACTTACAGGAGCAGGAGATTGAGCAGTACTACAGCTCAAACGTGCAGAGGAATCAGCTGGTTCAGAATGACATCCGTGTAGCCAAGAGGCTGCAAGATGAGGAGCAGGAAAGAGCTTACACCCTCCAACGCCAGTCTACACAGCAACTggAAGAGCAGGACTCTGAGTATGCGCGCAGGATTCAGGAGGAGCTGCAGCGATGTGCTGAGGAAACTCTGAGGAGGGAAATAGAAGATGAGGAAATAGCAAAGCGCATCCAGGAAGAGGAAGAGCTGCTTGTCAGACAGCGTTTAGGGTGCCAGAGAACAGCTGATGCAGGTCCCGCGCTGAGGAGGAATGGAGCCTCTCTGGATATGGGGGAGCTGGAGCAGGTCCTGCTGGATGAGGAGTTGGCTCGAAGGCtacaggaagaggaggagacgTTGCTCAGAGGCGATCCTCAGTCAACCCCAGTGTCAGCTCTCCACAGCCCTTACCCAGAAGGAGACTTCAGAGTAGCTCAGGTTGCTCAAGATGAGGAGATTGCACGCTTCATGCAGAAGCAGGAGATAAAGGCAAAGCGGCAGTCTCGAGAGCTGGAGGGCTGTGGGACGGGGAGGCAGTACAGAGAGATGACGAATGATCCATATGATGATAGAGCTGCATGTGGCAGACAGgtgcagagagagagactggactCAGAGGGGCTTCTCTCTCCCACTGAGGATTTCTCCCCAGAACATCAGCCCCCTAATCCAATCGCCATGGCTGCGCAGCAGCAGCCGTTCAGGAATATAGCTGAGGAACTGGATCCAACCTTTCACCGGAAAGAGAACATGCAGGCTGGACCCAACATTTCCGGGCCCTGCCAAGTCCAAGCCACTCCACAGACAGGCTCATGCGGCGTCACGCAGGACCCTGCATTCGTTCAGCCCACCAAGCGGCAAAACGACAAGCCAGTGCGAGTAAAGACCAAAGAGAAGAAGGAGAACACAAGACCAAAGGAGAACTGTAAGCAGCAGTGATGCTGTGATGTTGTGATGCTGGCAGAGCTCGAGGTCTGTTTACAGTGGGGAGGACTGGGTTAACACGTGAAGACAGCTCACCTACTTATTCAGTAGATAACAGGGTCATGTTTCTGAGGGGTTTCCCAATCCTTTACTTCCATTTTCTCTGGTAGATGTGGGGAAAGTTTACCCTTGAGGTAATAATGTAGTAAATCTGGTACATTAGAGATCAGGCTGCAGTCGTGTGAAAGGGAGACTCCGTCGGGAGACTAATCTGATTAAAGTTCATTTACTGTGTTGATAATATCCCAGCGTACTTTTTGTATTagtcatttttcttttcattttttatttgttacgcCTTGCACGTGTGTGCAGGGCCGGGGCTGGGCTCGTGCCACTGGGAATGCGCTGACTAATTCCGCTCTGAGTTCTAGTTTTGCTTACTAGAAAGCAAAACTATCAGTGTCTTTGTGAACCGTAGCGTAGAGCTTCTGCATGCCACGCCTCAGTTGCATTCCTAGAACTCCCTTTCTGAGTCACGTTGAGGAGATTATATTGCACAAAAtctctgtttaaaatgaaatttcTTAACCACAAACGTAGTTTCCCTTCTGCTTGCTTTTCTGCATTATTCCTGAAGCGTTTCCCATAAATATTATTACTTCTCGTCTACAAAAAAGCCTGTTTTGTCACATTGTAtagtttgtataaaaaaaaagaaaaaacttgtaTTTGACTTCCTGCACGAGGCTTTCGGTTTTTGTGTGCTTATTTATgatataaaactgaataaataaaaaaaaactaaaatgaa

Function

symbol description
ccdc187 Predicted to enable microtubule binding activity. Predicted to be involved in microtubule anchoring. Predicted to be located in centrosome.

NR:

description
PREDICTED: uncharacterized protein LOC107718813 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007246834.3 True 4228 mRNA 0.51 13 8044125 8089672
XM_007246835.3 False 2326 mRNA 0.50 12 8044125 8089657

Neighbor

gene id symbol gene type direction distance location
slc25a33 slc25a33,LOC107708828,LOC107695765,LOC107681985 coding downstream 133195 7897400 ~ 7910930 (-)
tmem201 tmem201 coding downstream 149406 7870566 ~ 7894719 (-)
LOC111194033 NA coding downstream 177979 7865096 ~ 7866146 (-)
pik3cd pik3cd,LOC107718809,LOC107708832 coding downstream 190603 7792614 ~ 7853522 (-)
clstn1 clstn1 coding downstream 368627 7610818 ~ 7675498 (-)
LOC103038232 camta1 coding upstream 38425 8128097 ~ 8396241 (-)
LOC103042037 NA coding upstream 366815 8456487 ~ 8484793 (-)
ttc29 NA coding upstream 397015 8486687 ~ 8497554 (-)
LOC103041018 LOC108433381,LOC108275535,LOC107563149,LOC107706984,LOC107664213 coding upstream 430692 8520364 ~ 8528100 (-)
mul1 mul1 coding upstream 493811 8583483 ~ 8587323 (-)
G130298 NA non-coding downstream 97511 7944255 ~ 7946614 (-)
G130288 NA non-coding downstream 115923 7923346 ~ 7928202 (-)
G130287 aurkaip1 non-coding downstream 121426 7919052 ~ 7922699 (-)
G130224 NA non-coding downstream 235826 7807942 ~ 7808299 (-)
G130181 NA non-coding downstream 317148 7726731 ~ 7726977 (-)
G130322 NA non-coding upstream 9174 8098846 ~ 8099847 (-)
G130325 NA non-coding upstream 16208 8105880 ~ 8119060 (-)
G130391 NA non-coding upstream 363905 8453577 ~ 8455898 (-)
G130404 NA non-coding upstream 425908 8515580 ~ 8515942 (-)
G130429 NA non-coding upstream 474555 8564227 ~ 8564663 (-)
ctnnbip1 ctnnbip1 other downstream 253363 7735739 ~ 7790762 (-)
G130093 NA other downstream 648334 7394939 ~ 7395791 (-)
LOC111194060 pex14,LOC107681981,LOC107708844,LOC107716227,LOC107586529,LOC107695784 other downstream 987403 7038930 ~ 7056722 (-)
LOC103044130 tac3 other downstream 1842224 6194674 ~ 6201901 (-)
LOC103042879 LOC108275853,LOC108433379,LOC107716207,LOC107695803,LOC107708859,LOC107570552,LOC107563637 other downstream 2259559 5743993 ~ 5784566 (-)
G130420 vwa5b1,LOC107664114,LOC107599492 other upstream 447332 8537004 ~ 8537987 (-)
camk2n1 NA other upstream 489730 8579402 ~ 8582453 (-)
cptp cptp,LOC108433359,LOC107706969,LOC107697856 other upstream 794919 8884591 ~ 8887165 (-)
LOC103021383 hnrnpa1,LOC108275985,LOC108275986,LOC107707002,LOC107697928,LOC107598948 other upstream 1225626 9315298 ~ 9322119 (-)
G130892 LOC108433414 other upstream 1752667 9842339 ~ 9843488 (-)

Expression


Co-expression Network