LOC103043345


Basic Information

Item Value
gene id LOC103043345
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 29937611 ~ 29945843 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022677529.1
AGACCCTTTTCAGCTGAGGTGCCGTGTTTGCCGGTTCAGTCTGAGATGGCTGCAGGAATAGTTGGGACCTGGCCTCCTGTACCAAATACCATAACTTATCTGCCCAGTACAATCAGCCCCCTGGCTGGGATGGAGCCTCCAGCCTTCCCAACTGCCCCTGACCTGGCGAGAACCAAAAGTGGTGAAATGGAGAATAATATGCTGCTTGAGGTTCTGAACCACTGCAGGATGTTGCAAACAGCAGTGCAGAGGCTTGAGCAGAAGATCGACAACCTTCAGTCAAACCAGTGCATTACCGGAGGATGCAGGACTCAAGCGATTCCACAAGAGGGACATTTCGGAACTGGTCAGCTCTCCTGGTCTCTTGCTCAACGCCTCGGTCCTTCACCTCAGACCAACCACCGCTGGTATCCTCCTTGGAAACGTGGCTCAGTCTCACAAGCCCCAGACCTCACAGACCCACTCCAGTCTGACCAGTGCAGCTTCAGGAACTCCAGCGGGCCCCGTGGTGGAGGCCGAGGGAAGGGCAGACGCAGAGACCGCTGGGGAGGTGCTAGAAGAGGAGCCCCTTTACAACAGCCAGACACAGAAAACCTTCAGGCTAAACTGGAGCCACTATTAGATGAGGCCTTCCCAAAAAAGGAGGAGTCCCAACCTTCCAAGATTAGTAAGAAGGCTCCTCACCTCGACAAGGTGGTGAAGAAgctcaaaaaaaagaagaaacgcCCTGCCGGGGCTGAAACCAAACCCAAGGATGAAGTGCCTGTTGAACTAGAAGACATGTCTACTGTCAAGGAGGACAAAAAAGtgATGATTGGCAGCGCCTCACGGAATGTCTGGATCCCCATGTCTATGTACATGCATGTGTTTAAGGAGGAGGAGCCCCAGAAGGCTGTGGTACCAGTGCTCCATACCCTGTTTCCTATTAGCACCCTGTCCTGCAGTGCCATCACAAGTGACCCTCTCAGGGGCATCCAGCTGCTTGACCCCAATAAACTGGAGGCCCTGCGAGAGTGGCTGGCTGAGATGTACCCACAGCACGACATGAGAGTAAGGGGCGTGGCCTGGGCTGAGTGCTTGGGTGTTATCAACAGCATCACTAAAGATCTTCGCAGAAGAGAGGAGATATCTGGAGAAGGGGAAGCCCCACAACTTTAACTCTAACCTCTGCAGTTCTGATCCAACATCCAGCACTACAACAGCATTGTCTACTACAAGCAAATCATTACAGTACAGGTTTGTTGGTCACAACCTCAGCACAACCTCAACTTACTTGAGCCCCACCAGTGATGTGATCTGCCTCGAACTGTGGACCAGAACTACGAACAGGTTTAACTAAAGATGATGCAAATATTCATCCATAAATACCTACACACTACTGAGCCTGAAGATCATTTGTTGGAAGGTGTGGAATTTGTGCGTTTTGAATGTGCATGAGGTTCATTCCGAACTGATGAGTCCTGCTTTAATGCAATGCTGGTTCAGTTCCCCGTCCAAGTGAAAAATAGAACTAAAGAACTAAATAATGACATCTGAGTTACTGAGAGATCATACTTCTGAAGATGAGCCAATCTGGgtggattttttgtttgttgccttcgttttttcttattattatttttgttctttttctaatCTTCAAGGTGCTTATAATAATCTTCAGACTGTATAAATGAGTAAAACTGAAGCTCTTtcctttttacatatttttaactcATAAGTAACAAGTGTACTCACTGAATGTGCTAGTGTTTCTATttacaaataaactgaaaataaatgcttttgcTCA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022677529.1 True 1792 mRNA 0.48 7 29937611 29945843

Neighbor

gene id symbol gene type direction distance location
tmem27 NA coding downstream 203285 29715854 ~ 29734326 (-)
LOC103044767 NA coding downstream 255746 29672897 ~ 29681865 (-)
LOC103044459 NA coding downstream 266132 29658396 ~ 29671479 (-)
rnf146 rnf146,rn146,LOC101067458,LOC106605535 coding downstream 485644 29446027 ~ 29451967 (-)
LOC103039434 LOC103039434,LOC108275705,LOC107573937,LOC107737944,LOC107694639,LOC107566551 coding downstream 630909 29301038 ~ 29306702 (-)
LOC103043043 NA coding upstream 1939 29947782 ~ 29989266 (-)
prpf6 prpf6,LOC107673318,LOC107705744,LOC107697009 coding upstream 111303 30057146 ~ 30086561 (-)
naa10 naa10,LOC107693544,LOC107723122,LOC107705681,LOC107696956 coding upstream 655484 30601327 ~ 30607046 (-)
LOC103035433 g6pd,LOC108276145,LOC107723128 coding upstream 664471 30610314 ~ 30632870 (-)
LOC103034470 LOC108411656 coding upstream 689333 30635176 ~ 30647734 (-)
G136105 NA non-coding downstream 638 29871167 ~ 29936973 (-)
G135972 NA non-coding downstream 522593 29360169 ~ 29415018 (-)
G135987 NA non-coding downstream 537881 29397397 ~ 29399730 (-)
G135971 NA non-coding downstream 593368 29343952 ~ 29344243 (-)
G135970 NA non-coding downstream 595650 29325670 ~ 29341961 (-)
G136169 NA non-coding upstream 81191 30027034 ~ 30027279 (-)
G136174 NA non-coding upstream 141268 30087111 ~ 30087337 (-)
G136198 NA non-coding upstream 187777 30133620 ~ 30174558 (-)
G136225 NA non-coding upstream 375767 30321610 ~ 30327845 (-)
G136255 NA non-coding upstream 496697 30442540 ~ 30442747 (-)
LOC103038817 LOC103038817 other downstream 656919 29274161 ~ 29280692 (-)
LOC103034081 NA other downstream 690226 29242243 ~ 29247385 (-)
G135910 NA other downstream 815940 29067891 ~ 29121671 (-)
LOC103037426 NA other downstream 1122993 28809292 ~ 28814618 (-)
LOC103032909 pik3ca,zgc:158659,LOC107653898,LOC107571432,LOC105891463,LOC102200943 other downstream 1197271 28708643 ~ 28740340 (-)
G136173 NA other upstream 102438 30048281 ~ 30055728 (-)
G136691 NA other upstream 2421350 32367193 ~ 32367462 (-)
G136773 NA other upstream 2837231 32783074 ~ 32784304 (-)
pi16 NA other upstream 3540374 33486217 ~ 33511035 (-)
G137043 NA other upstream 3601512 33547355 ~ 33550978 (-)

Expression


Co-expression Network