G135987


Basic Information

Item Value
gene id G135987
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 29397397 ~ 29399730 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU183967
TTCTGTCAAAGcactttaaagcatttattagaGGAGAAAAATATGAGATAAAACATCACATTACAGTAACATTGACAGCGACAGTCTTTCAAGACGTTGCATCGCCGTTTTAAAAGCCACTTCTTTTGCGATTATCCATTCAAAACAGATCATTCACCTCTCAGGGGGTGCTGAACTGAAGGGAGACGGCGATCCGGATGAGTTCTTCATAAGAAGGCTGAGACGCAGACGCATTCTGTCTGCTAAGGTCTATGGAAAATTCCACACAACAATGGTATAAAAGCATAGTTACAGTACTAAACACTTAAAGCCATACTGACTGTTTCAGACTAAAGgtctacttacttacttacttacttattgcCATCTTCATACTGCCatactcattctctcactctaacAGCTATcagactcattttttattaaaaataaagatcacTAAGTGGCTCTTTATGTTTCCATTTTTTATCCAAAGCTGGATCAATGACGATAAGTTCCTCCGTTCTGTTGCAGTTAGcaagctatctatctagctctGGCATCaactatatacaatataaacacaaatgtcaacatatttaataatacCAGATAGGTATATGTTATATTAACTTCAGAGGACAGCGCTGTATGTAACTGACGAGACTGGTAGCAGTGCAGCAATTAGCTGAAGTGCTAAATTAGTAGTTATCAAAACGGCTGGCtgtaaacagtgtaaacagtaaaaacacttaaaagtaAACAAAGTAAAGCATAGAAAATTGGTAACAACCctcattaaatcattaaagcAAGGTAACTGAAATATCTAGAGTCAGAAAAGGAGCTAAGCTGACAAACAAAACAACCCTGTTAATCATACGCTTACAAAAGTTTGATGCTAAAATGCAGCTACAACTACAACTGCTGTTGCATTACTTCTCTGTATAGCTTGATTAGCTAAGCAGCTAGCTGTTAGCCAACAAAATAGCCAACAGTTTATAAATCACTGTagttaaaaacaacaaatctaCTGATTTTGACTGATGTTGTATCATCCATCATCTTTATTAATAGCCACTGGAGAAAAAATGATTCTGGTTGGTGCTAAAATAAGGATAAAATTAGTAGTGCAACTGGTTACAGACGTACCGTATGTAAGTGTGTCAAAGTTCACCAAAACTGAACATGACGCTAAGTCTATTCTCTCTTCACTTGTCTGCATCAAATTCcttcaaaatgcaaaaatgcaatTCCACTTGACTGGGCCTTTCCTGCTGATCTTCAGTCTGAAACACTAGCGTATGgctttaaatggttttaaaaggacactgaaaaaaacaatggcacactgttaatttttttgcacttgCTCATCACACCACAACTGCATCGGAGTCACAAACTACCACGTGCTGCAGCTGTGTACTGTGCATGCTTTGTACAGGCTTCGTCATGTAGCTGCAGATAAATGCCAACGGGATGGCACCACGGCAACCAcgcactcaaaaaaaaaagagaaataaatagtgaaaagaaaaaaagagagagagaaaacaatacaaaaatgaGAATGATAGAAatgaagaaaggaaaagaaaagaaatggcgATGGCCGGAAAGGCTAATGGAAGGGCGTATAGGCACAGGAGTGTATCAGGCCACCTTAGATCAGTTTCACAGTCCACAAATGTGTCACATCCAAATCTACACCAGTGCGGTCTTTACGTACACCGGCGATTGTTTGTCGTTTTTACAGTAATggattttaaaggttttaaagaaAAGCACAGTAGGTAAGTCTCCAGTTCCTCCTTTTAGCTGACCATTCTTCTTGACTGggcttttaaagaaaacaagggATAtttacagagacagacacactgAAGGTGGGGGtgaaggttgtgtgtgtgtatttgagggAGGTGGGACTGGAAAAGATGATGCTCAGTCGTATAGAAAGGTCAGGGGTGGAAATGAGTCATTCTGTCCATCCAGGAAGGAGCTCACATGACGGTCACATGATGACTGTTTCTGTGTATAGATTGACGCTGTTGTTGAAGTTGCTGAAGTTGTTAAAGGGCTGCTTGGCTTTGCGGGCAGGGCTAGGTGGGCGGTGCATGGGGCCAGAGGGTGTGGTGATTTTTGACGTGGGGGCGTGGCTTGCCCATCGGGACGGAGGCCGTTGGTTTGCTGGCCGAGCAGGGCGTGAAAAACTTCTGGGAGGGATTGAAGATGGT

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU183967 True 2219 lncRNA 0.40 3 29397397 29399730

Neighbor

gene id symbol gene type direction distance location
LOC103039434 LOC103039434,LOC108275705,LOC107573937,LOC107737944,LOC107694639,LOC107566551 coding downstream 90695 29301038 ~ 29306702 (-)
LOC103039130 eno3,LOC108416151,LOC107737945,LOC107694617,LOC101175132 coding downstream 100648 29287828 ~ 29296749 (-)
LOC111194136 NA coding downstream 133166 29259603 ~ 29264231 (-)
camta2 camta2,LOC108410734,LOC107687367,LOC102789477,LOC102194725,LOC102298426 coding downstream 158088 29205620 ~ 29239309 (-)
LOC111194137 LOC108410735 coding downstream 204710 29187419 ~ 29192687 (-)
rnf146 rnf146,rn146,LOC101067458,LOC106605535 coding upstream 46297 29446027 ~ 29451967 (-)
LOC103044459 NA coding upstream 258666 29658396 ~ 29671479 (-)
LOC103044767 NA coding upstream 273167 29672897 ~ 29681865 (-)
tmem27 NA coding upstream 316124 29715854 ~ 29734326 (-)
LOC103043345 NA coding upstream 537881 29937611 ~ 29945843 (-)
G135971 NA non-coding downstream 53154 29343952 ~ 29344243 (-)
G135970 NA non-coding downstream 55436 29325670 ~ 29341961 (-)
G135959 NA non-coding downstream 157666 29239530 ~ 29239731 (-)
G135957 NA non-coding downstream 187563 29209488 ~ 29209834 (-)
G135938 LOC103035469,LOC105891467,LOC108275695,LOC107566544,LOC107681651 non-coding downstream 252511 29131457 ~ 29144886 (-)
G136105 NA non-coding upstream 471437 29871167 ~ 29936973 (-)
G136169 NA non-coding upstream 627304 30027034 ~ 30027279 (-)
G136174 NA non-coding upstream 687381 30087111 ~ 30087337 (-)
G136198 NA non-coding upstream 733890 30133620 ~ 30174558 (-)
G136225 NA non-coding upstream 921880 30321610 ~ 30327845 (-)
LOC103038817 LOC103038817 other downstream 116705 29274161 ~ 29280692 (-)
LOC103034081 NA other downstream 150012 29242243 ~ 29247385 (-)
G135910 NA other downstream 275726 29067891 ~ 29121671 (-)
LOC103037426 NA other downstream 582779 28809292 ~ 28814618 (-)
LOC103032909 pik3ca,zgc:158659,LOC107653898,LOC107571432,LOC105891463,LOC102200943 other downstream 657057 28708643 ~ 28740340 (-)
G136173 NA other upstream 648551 30048281 ~ 30055728 (-)
G136691 NA other upstream 2967463 32367193 ~ 32367462 (-)
G136773 NA other upstream 3383344 32783074 ~ 32784304 (-)
pi16 NA other upstream 4086487 33486217 ~ 33511035 (-)
G137043 NA other upstream 4147625 33547355 ~ 33550978 (-)

Expression


Co-expression Network