CI01000012_07113504_07118919 (MGME1)


Basic Information

Item Value
gene id CI01000012_07113504_07118919
gene name MGME1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 7113356 ~ 7119168 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_07113504_07118919.mRNA
AAATGTTGCATTGTGGGAATTGCTGTTTTATGGGAACGTGTTCAGTGTACGTTCGATGAAGTTCAAACTACAATTCCCATAATTCCCCAGTAGCTCCAGTTCAAACTGCGCTCCATTTGAAACTGGAACGTAGCAACATCGTGATCGCTAACTTTTTTTGTTTATTTATTTGAATCTATCTATCCATTTTCCAAAGCATGCGAATGCAGACGTAAACATCCCCACAGAAACAGGATAAGAACATTAAGCATGGCGATTACAATGCAAGTATTGAAGCTTTTGATACAGTGCAAGTGTGCGAGACCAATGGGCTTCCCCTCTGGTAAGTTCTCGCGTGTGGACAGCCTTTCAACTAGCTGTCAATGGCGAGCACGCAAAAAGGCCAGTAAGTACAGCACAGTGGACACAGAGCGCTACTCGTCTCTGGTGCGCGCGGTGCTGTCCTCAAAAACCAGCTCCCAGACTCCTGCGAGCATCGAGGATGAGGACTGTCAGCTGTACGGACCTGTAATAAGATCCAGACCGCCTTCACAACAGCCCAAAGTACCTAAAAACCTGCATCCACTGTTAAATGAGGCCAAAGGTCAGTCGGAGTATGTGCCGGGAACTTTGGCTCGTATAACATTACAGAGGGACTCTAATACGACATATCTGCCCAGTGTGACCCGAATCCTCCAGAAGACCATGCCACCTGACCAAGCGTTTTACCTGGAGAGGTGGAAGAGAAGGATGATTGCTGAACTCGGAGAGGAAGGATTTAAGGAATACAGCTTGAACATTTTCAGACAAGGACAGCTGTTCCATGCTGCCATTGTGGAGAATTTCACCCAGGAAACCCCTTCCAAAGAGGACCCTGAGCACCCACTGGATGTGTCCGGATTTGTAGAGAGTGTATCTCATGTGCTGAATGAAATAACAGGAGTGAGAGCTATTGAGAGTGCGGTGCAACATTCTACATTACAATACCTGGGCATTGTAGATTGTGTTGCCCAATACAGAGGTTCATTGTGTGTCATTGACTGGAAGACCTCAGAAAAGCCCAAGCCCTTACTTCGCCATACTTATGACAATCCATTACAAGTAGCTGCATACATTGGGGCCTTGAACAGTGACAACAACTACAGCTACCAGGTAGAAAACGGTTTAATTGTGGTGGCCTACAAAGACGGATCACCCGCACATACTCACTTCCTGAACTCACAGCAGATTATGCCGTTCTGGCAGAAATGGCTGCTTCGACTAGAAGAGTATGCAGAAAAATAAAACGGCTTTAACTAGTGTAACAAATCAAGCTGATGCTACGCAATGTGTAGTTTAACTGTAAATGTTTGTTTTACATTTGATACAAAAAATATATAGTTGTGTTTTACACATTTTATTAATGGAATGGATTCTTTATAATTTAAATAAA

Function

symbol description
mgme1 Predicted to enable single-stranded DNA exodeoxyribonuclease activity. Predicted to be involved in mitochondrial DNA replication. Predicted to act upstream of or within mitochondrial DNA repair. Predicted to be active in mitochondrion. Is expressed in several structures, including digestive system; lens; solid lens vesicle; vasculature; and ventral mesoderm. Human ortholog(s) of this gene implicated in mitochondrial DNA depletion syndrome 11. Orthologous to human MGME1 (mitochondrial genome maintenance exonuclease 1).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K19465 MGME1, DDK1; mitochondrial genome maintenance exonuclease 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_07113504_07118919.mRNA True 1411 mRNA 0.44 4 7113356 7119168

Neighbor

gene id symbol gene type direction distance location
CI01000012_07092852_07097731 EPHX5 coding downstream 15625 7092852 ~ 7097731 (-)
CI01000012_07032479_07034631 NA coding downstream 78155 7020730 ~ 7035201 (-)
CI01000012_06989295_06990487 NA coding downstream 122513 6988932 ~ 6990843 (-)
CI01000012_06979304_06984075 NA coding downstream 128412 6979296 ~ 6984944 (-)
CI01000012_06872835_06911259 NA coding downstream 201388 6872715 ~ 6911968 (-)
CI01000012_07164949_07166936 NA coding upstream 45671 7164839 ~ 7166936 (-)
CI01000012_07210006_07251043 NA coding upstream 90427 7209595 ~ 7251043 (-)
CI01000012_07268516_07270856 NA coding upstream 149320 7268488 ~ 7270856 (-)
CI01000012_07316139_07320354 NA coding upstream 196862 7314756 ~ 7321193 (-)
CI01000012_07322669_07329009 NA coding upstream 203465 7322633 ~ 7329512 (-)
G74121 NA non-coding downstream 3418 7108035 ~ 7109938 (-)
G74073 NA non-coding downstream 7520 7105424 ~ 7105836 (-)
G74079 NA non-coding downstream 8912 7104053 ~ 7104444 (-)
G74256 NA non-coding downstream 10893 7102190 ~ 7102463 (-)
G74255 NA non-coding downstream 11496 7101425 ~ 7101860 (-)
G74280 NA non-coding upstream 76863 7196031 ~ 7196281 (-)
G74281 NA non-coding upstream 77558 7196726 ~ 7197018 (-)
G74284 NA non-coding upstream 82097 7201265 ~ 7201484 (-)
G74287 NA non-coding upstream 95669 7214837 ~ 7215997 (-)
G74288 NA non-coding upstream 130884 7250052 ~ 7250269 (-)
G72629 NA other downstream 965862 6147011 ~ 6147494 (-)
G72294 NA other downstream 1647499 5462840 ~ 5465857 (-)
CI01000012_05414096_05416676 TTC9 other downstream 1696576 5413369 ~ 5416780 (-)
G72204 NA other downstream 1811150 5293773 ~ 5302206 (-)
G72068 NA other downstream 2333224 4776220 ~ 4780132 (-)
CI01000012_07356934_07358497 NA other upstream 236084 7356863 ~ 7358612 (-)
G74648 NA other upstream 1145161 8264329 ~ 8265654 (-)
G74701 NA other upstream 1247851 8367019 ~ 8367643 (-)
CI01000012_09068458_09070536 NA other upstream 1948738 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA other upstream 1952203 9071371 ~ 9073457 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006130 mgme1 coding NC_007124.7 CM002897.2 33655404 ~ 33658885 (+)
bowfin (Amia calva) AMCG00001578 NA coding CM030143.1 CM030143.1 7937251 ~ 7939840 (-)