G186915


Basic Information

Item Value
gene id G186915
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035918.1
NCBI id CM008321.1
chromosome length 32506130
location 3217221 ~ 3217564 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU253416
tgatgagatttttctgatagctgcttaaaaatactccgaaataaaacacacagattaaaccttttaaaataaaaaaattacagcttgtgactcagtttaactagaaatgtggagaggaccgacattaactgaactgatcaggggtggagtgatcaaaaggaagaagtattaattaaaaattattaattgtgtaggccccttaggactaatttttactgatggaatatatgtggtccatgtccttttagtaaaagctcataataccatttttaggtcaccaacagtcattttgcagaatttgtgcactctttgttcaattttaaatctattaaataaataaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU253416 True 344 lncRNA 0.31 1 3217221 3217564

Neighbor

gene id symbol gene type direction distance location
ccdc66 NA coding upstream 125080 3073126 ~ 3092141 (+)
amigo3 amigo3 coding upstream 365960 2830195 ~ 2851261 (+)
nicn1 nicn1 coding upstream 1161498 2045648 ~ 2055723 (+)
dag1 dag1,LOC108415278,LOC107691879,LOC108415277 coding upstream 1260593 1901638 ~ 1956628 (+)
rbm15b rbm15b coding upstream 1838663 1371719 ~ 1378558 (+)
atp6ap1l atp6ap1l,LOC108254970 coding downstream 181776 3399340 ~ 3414065 (+)
pde12 LOC103373718 coding downstream 199464 3417028 ~ 3420809 (+)
LOC103037296 LOC103037296,LOC108431583 coding downstream 214541 3432105 ~ 3435492 (+)
LOC103028776 LOC103037296 coding downstream 220287 3437851 ~ 3442418 (+)
slmap slmap coding downstream 258091 3475655 ~ 3552714 (+)
G186914 NA non-coding upstream 9110 3207681 ~ 3208111 (+)
G186913 NA non-coding upstream 12754 3204177 ~ 3204467 (+)
G186912 NA non-coding upstream 28591 3188263 ~ 3188630 (+)
G186911 NA non-coding upstream 38315 3178524 ~ 3178906 (+)
G186895 NA non-coding upstream 155703 3061296 ~ 3061518 (+)
G186917 NA non-coding downstream 59423 3276987 ~ 3277267 (+)
G186968 NA non-coding downstream 137147 3354711 ~ 3401425 (+)
G186984 dennd6a,LOC107680547,LOC102794572,LOC107657973 non-coding downstream 231824 3449388 ~ 3456891 (+)
G187015 NA non-coding downstream 446676 3664240 ~ 3679332 (+)
G187030 NA non-coding downstream 514028 3731592 ~ 3731860 (+)
G186880 lmcd1 other upstream 215206 2980497 ~ 3002015 (+)
podxl2 NA other upstream 2121884 606833 ~ 1095337 (+)
cers5 cers5,LOC107698577,LOC107590873,LOC107694004,LOC107718462 other upstream 2679005 510575 ~ 538216 (+)
G186231 NA other upstream 3102134 107396 ~ 115087 (+)
G186978 rps23,rs23,LOC106566095,LOC106566598 other downstream 174823 3392387 ~ 3394843 (+)
p3h1 NA other downstream 2562327 5779891 ~ 5798979 (+)
LOC103029365 NA other downstream 3859601 7077165 ~ 7098672 (+)
trnaq-uug_4 NA other downstream 3974590 7192154 ~ 7192226 (+)
LOC111195452 NA other downstream 4894439 8112003 ~ 8113242 (+)

Expression


Co-expression Network