XLOC_000772


Basic Information

Item Value
gene id XLOC_000772
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56561226 ~ 56604352 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003238
AAGCAATGCTGAAAATGGAAGGATCAGAGCAAATACAaaccaaaatactaattaaagaaGAAAGAGGAACTAAAATCTAACaagtattgaatataaaaaaaatgaaattatttaattcacCACTTTGTAGACATTATAACAAGCTGTTATTTGACTGAAGACAACACTCATAAACCCATAAACCATTTATTGCAGCagaacaaataaatgcattatgcTTTATAATCAGTGTGCTTAAAACATTTGcccttttacagtattttttaattattcatgtatttatttcattattatttagctATTGTtggattcatttttttaaagattcaaAAAGACTGAAATCTTTa
>TCONS_00003239
AGCAAATACAaaccaaaatactaattaaagaaGAAAGAGGAACTAAAATCTAACaagtattgaatataaaaaaaatgaaattatttaattcacCACTTTGTAGACATTATAACAAGCTGTTATTTGACTGAAGACAACACTCATAAACCCATAAACCATTTATTGCAGCagaacaaataaatgcattatgcTTTATAATCAGTGTGCTTAAAACATTTGgccttttacagtatttttttattattcatgtatttatttaattattatttagctATTATTTAGACTATCTTTATCAATTTGCAAATCAAAACTCCCAAAACGTGTAATGAATATGGAAATTTTACtcacagttttaaacactgacaAAAGTTTCATCCAACAAACACTGACCCAAACAACATCGACACTCAGCACTACATGAGGATGTCTTGcgtaaaatgtcttaaaaagctGAGTTTGTGTTTAGCTTTATGCAATTGCATATatgcacagttaaagtcagaattattcaccctcctgaattattagccccc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003238 False 347 lncRNA 0.26 2 56561226 56604170
TCONS_00003239 True 533 lncRNA 0.29 2 56561253 56604352

Neighbor

gene id symbol gene type direction distance location
XLOC_000768 NA coding upstream 4921 56416638 ~ 56556305 (+)
XLOC_000771 CABZ01059403.1 coding upstream 32034 56502706 ~ 56529192 (+)
XLOC_000770 zgc:171452 coding upstream 92625 56463494 ~ 56468601 (+)
XLOC_000769 CABZ01059392.1 coding upstream 103189 56447107 ~ 56458037 (+)
XLOC_000767 c3a.3 coding upstream 240657 56274613 ~ 56320569 (+)
XLOC_000775 NA coding downstream 55845 56660197 ~ 56662651 (+)
XLOC_000776 NA coding downstream 64806 56669158 ~ 56683634 (+)
XLOC_000777 CABZ01049361.1 coding downstream 151184 56755536 ~ 56760851 (+)
XLOC_000778 CABZ01049362.1 coding downstream 163911 56768263 ~ 56769327 (+)
XLOC_000779 FO680692.1 coding downstream 175143 56779495 ~ 56786921 (+)
XLOC_000760 NA non-coding upstream 832100 55714918 ~ 55729126 (+)
XLOC_000761 NA non-coding upstream 839811 55717578 ~ 55721415 (+)
XLOC_000758 NA non-coding upstream 881779 55678912 ~ 55679447 (+)
XLOC_000748 NA non-coding upstream 1121951 55437572 ~ 55439275 (+)
XLOC_000781 NA non-coding downstream 201782 56806134 ~ 56807602 (+)
XLOC_000783 NA non-coding downstream 214801 56819153 ~ 56900288 (+)
XLOC_000785 BX927068.1 non-coding downstream 226446 56830798 ~ 56834002 (+)

Expression


Co-expression Network