XLOC_000776


Basic Information

Item Value
gene id XLOC_000776
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56669158 ~ 56683634 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002885
ATGTTTACAGtagtacatttttttcattttttctctttttctttctctttttctttctccttttctttcgcTTTTTTAATGCTCTTGTTTCTGTATTGTTTTGCTGCACCTATACCTGCAGCAAGTGCAAGCTTGGCGAGTATGGACATTCCTCCTGTAGCCACCGCTAAACCCGCACCACCCACCACTACTGCTGCCACACCAGCTCCCAGCATCACCTTCTTCGCCATCTTCCACTGTTTTTGGTTCTCTTCCTCAGCGCGCATCTCCTCTTCTTTACATTTGGCTGCTAAAAGCATGATGTAAACACAACAGCAGTGAGTTTATATTTagcgctcagcataattgagttcaCAGATCTCTCGTTTATGTTGAAAATTTCAATAGGATACTTCACAGCATGCGTTTCTCAACCACGCTCCTAGagaaccaccaacactgcatgtacAGGCCTTTCTGTCTCTGCTACTGAGCTgataatctgaatcaggtgtgtttagttgaGGAGACATGgagaatgtgcagagctggtggtcctccaggaacgtggttgagaaacactgctttacagtaatatatgtgttacattagatcagtcagtaccAAAGACAAAACTGGAACTGATCTGTCAACAGACCTGAAGATCACTGTTTAAAAGTATAGTACGCCAAATTAATATTCAtacgttcattttcttttcagcttagtctccttATTAATCTGccgttgccacagcggaatgaactgccaacttatccagcatatgttttacacagtggatgcccttccagctgcaacccatcaatttCATGtcgtttttgaacccaaataaggactaaatgtatgctgtgtgtagtttttctgtaattggtatcATATCGGAGACTgcaagggtctgtatgtgttcatatatgtagcatttatttatttttatataaattgcagacgttacagtagacaATTTCGcactgcagttataatcaaattctGTTAAtggaaaggttagtaatgaataTTTATTCTCGCTTTATATGTGAacggccagcctgatctcacgggaaaacgtaagtattttacgttttgccagtttagtggctatttcgtacgaattcgtacaagttcagtcgtacgaaatggtacgattttaaaaaggagtcgtggcacctaaccccacccctaaccccaaccgtcattgggggatgagcaaatcgtactaaattgtaccagttagatcgtacgaattcttacgaattagccactaaatgaaaaagttacaaatatctgtgagattgtgttggaacagcctgatctcacgagaaaacgtaagtattttacgttttgccagtttagtggctaattcgtacgagttcagtcgtacgaaatggtatgattttaaaaaggaggcgtggcacctgaccccacccctaaccccaaccgtcattgggggatgagcaaatcgtactaaattgtacaaattagatcgtacgaattcatacgaattagccactaaatgaaaaagttacgaattgccgtgagattgtgttggttggaatggcccgtacagctttactgtagacattttcttgagTAAAAATGACACTGTCTAAAACTTTGTCACACCACGCCCACTCATTAGTACCCTTTTGACAGTCGAAATGCAAGCCTGATGAAGGTGACCAACCcctaccatactgtaccactcagtggaaatgggccattgtTTCATGTCGATTCCTAAGAAACCCTCACAATCAGACAAGCTTTAAACTTTTCTTCCTGAAGTTGCCaataaatttcacaaaaaaagaaaatacaaaactcTTAAGTGGAGCTGaaatcgtttgtttgtttgtttctcaaAAATGTGTTCTATTCATTTAACAAATGTACACATTTTACACTGAAGGTGAGCAGCTGTTTGCTTATAACTGAACACACTGGACATGAAGGTACATTCAGATTCACAAACATGACAGATTGTTGATCATTTGTGTTCATTCATATACTTACCATTGGCCTCATCCTGATTATCTCCAATATACACCACTCTATCATGATCACTGTCATCATCATCGTCCTCATCTTCTTCGTCCTTATCTTCATCATGGTCTGCTTCTAAAATTTTACAGTACGATTCAAAACAGTTTAATTAAATCCAACATTCAAAGGTTTATTTGCAGTGCCtattagagcagtgtttctcaaccacgttcctggaggaccaccagcactgcatctTTTAGATGTCTCCTTGGTCTGTCACACCCAGTACAGGTATTCCAGTCTCTGTTAATGAGCTgagatctgaatcaggtgtgattggaaaatgtgcagagctcgtccttcaggaatgtggttgagaaacactgtattaGACTACATGCATCAAATTGCTATCAGTGtaattatgtattatttcatGGGTCACTAAACACCAAAACAGATTATTTGAGAtgctgacagtcatatatgtgtgtaaacactattaggacatgtATATCTCACtaacaagtgaaaattggttgtttttgcgttatttcgagcaagtTCGTTCCTCtggtttgaaaataaatgttgaagCAACGTCACGGCGATTAGATCCTTGTCTGAATATCAGCATGTAGACTGGCTGTTTGTACCGGCGGGTACAACGTGACGTCTTTCAGCAATAATTCATGAGAAAGGCTTCCAAGTCTTTTCAGACCACCAAtaagcgcgctctattgtgtatgaggcgcaacttcattaatatgcatgaaagCTCTGAAGACTATTTTTACCTGTTACAGGGTTCAGACGGAAGaaaaagaattgtttggagacacgggtcgtcagtgttgtttgtaaatgtgctgcaacaagagtgttgttttcatttccccgctatgagagtgcagctggactcaGATGTGGATTACAatggtctgctaacatgcaacagaaatatgtttgtaaggaacatttttttaccctagagcttttcgcatctgcaAATGGTCAGATCTGGATTTGTCGTTCTTTTAGTTAGTATAGAAA

Function

GO:

id name namespace
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0009060 aerobic respiration biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0051276 chromosome organization biological_process
GO:0051301 cell division biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:0008380 RNA splicing biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005634 nucleus cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0070469 respirasome cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002885 True 3036 lncRNA 0.40 2 56669158 56683634

Neighbor

gene id symbol gene type direction distance location
XLOC_000775 NA coding upstream 6507 56660197 ~ 56662651 (+)
XLOC_000772 NA coding upstream 64806 56561226 ~ 56604352 (+)
XLOC_000774 NA coding upstream 65348 56569514 ~ 56603810 (+)
XLOC_000773 NA coding upstream 104806 56562827 ~ 56564352 (+)
XLOC_000768 NA coding upstream 112853 56416638 ~ 56556305 (+)
XLOC_000777 CABZ01049361.1 coding downstream 71902 56755536 ~ 56760851 (+)
XLOC_000778 CABZ01049362.1 coding downstream 84629 56768263 ~ 56769327 (+)
XLOC_000779 FO680692.1 coding downstream 95861 56779495 ~ 56786921 (+)
XLOC_000780 si:ch211-1f22.3 coding downstream 117387 56801021 ~ 56805426 (+)
XLOC_000781 NA coding downstream 122500 56806134 ~ 56807602 (+)
XLOC_000783 NA non-coding downstream 135519 56819153 ~ 56900288 (+)
XLOC_000785 BX927068.1 non-coding downstream 147164 56830798 ~ 56834002 (+)
XLOC_000787 NA non-coding downstream 167401 56851035 ~ 56857465 (+)
XLOC_000788 NA non-coding downstream 189463 56873097 ~ 56878634 (+)

Expression


Co-expression Network