XLOC_000780 (si:ch211-1f22.3)


Basic Information

Item Value
gene id XLOC_000780
gene name si:ch211-1f22.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 56801021 ~ 56805426 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00001266
AAGTGCATGAGCTAAAATAGTCCGTCCATCAGTCACTGTTGATCTGCTGCTCTTCAACACGATAGATTTGATGCTGATGTGGCTCAGAAtggctcctgctcttcatctgatCTTTCTGCTCATCATTCACAGGGTTTCTAGTGCTGATTGGGCTGTGAATTATATTCATTCACGCATCTGTGCACTAAAGAACTCATCAGTGATAATGAGCTGCACTTTTACATACCCGACTAGACATCAGATCAAGAAAGTGTTCTGGACCAAAGACAATGTAAAAGATATTGAGCCAACAGATCTGTCTAAGGACCCTGAATACAGTCAGAGGCTTCAGTATCTGGGAGATAAACAGCAGAACTGCACCGTCAGACTGAGTCATGTGACAAAGAAAGATGAACACCAGTATTATTTCAGATTCATTACTAATGTACCAAATGAAAAATGGACTGGTAAACCAGGAGTGCATCTCTCTGTCACAGatcTTCAGCTGGAGTCTCCTGAGAGAGTGACAGAGGGAGATTCAGTCCGTCTGACATGTAACAGCAGCTGTAAACTGACTGACACACCAACATTCATCTGGTACAGAAACTCACACACATTGACTGAAGGAACTACTGGAGACAAACTCATATTAATTTCATTCAGAGAAGAATATGCAGGCAGATATAGATGTGCTGTAGAtggacacacactcacatcacCTGAGGTCTATCTCAATGTCACCTatCCTCCAAAGAGCGTCTCAGTGACCATCAGTGGATCTGCTGTAATAATgtctggagattcagtgactctgagctgcagcagcgactcaaaccctcctgcagaAATACACTGGTTTAAAGGAGAAACATTTGTAGGATCTGGAAGAATCTTAAACATCTCCAAGATCAGCtctgatgacagtaaaaaatacaaGTGCAAGGCCAAAAATGATCATGGAGTGAAATACTCTGCtgctgtgactttaaatgttcAGTACCCACCCAGGAACCTCTCAGTGACCATCAGTGGATCTGCTGTAATAGAGTATGGAGATTCAGTGGGTCTGATGTGCATCAGTGACTCAAATCCTCCTGCTCTGAGCTTCAGCTGGTTTAAGGAGAATCAAAGCTCAGCTGTTGGATCTGGACAGAGTTTCAGTGCAGTACAGAGTGGACGCTTCTACTGTGAGGCTCACAATCCACATGGAGCTCAGAGATCAGACGCCGTCACTGTCACTGTTCATCAGCATGCTGAgagaaacatcatcatcatcatcacagcgACATCTGGAGgattattcatcatcatcatcatcataatcctGTGTTTAAT

Function

symbol description
si:ch211-1f22.3 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-89 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000101532

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00001266 True 1314 mRNA 0.43 7 56801021 56805426

Neighbor

gene id symbol gene type direction distance location
XLOC_000779 FO680692.1 coding upstream 14100 56779495 ~ 56786921 (+)
XLOC_000778 CABZ01049362.1 coding upstream 31694 56768263 ~ 56769327 (+)
XLOC_000777 CABZ01049361.1 coding upstream 40170 56755536 ~ 56760851 (+)
XLOC_000776 NA coding upstream 117387 56669158 ~ 56683634 (+)
XLOC_000775 NA coding upstream 138370 56660197 ~ 56662651 (+)
XLOC_000781 NA coding downstream 708 56806134 ~ 56807602 (+)
XLOC_000782 si:dkey-27j5.6 coding downstream 8419 56813845 ~ 56816695 (+)
XLOC_000783 NA coding downstream 13727 56819153 ~ 56900288 (+)
XLOC_000784 si:ch211-1f22.5 coding downstream 18011 56823437 ~ 56827882 (+)
XLOC_000785 BX927068.1 coding downstream 25372 56830798 ~ 56834002 (+)
XLOC_000772 NA non-coding upstream 196669 56561226 ~ 56604352 (+)
XLOC_000787 NA non-coding downstream 45609 56851035 ~ 56857465 (+)
XLOC_000788 NA non-coding downstream 67671 56873097 ~ 56878634 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location