G308659


Basic Information

Item Value
gene id G308659
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2410677 ~ 2413833 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU424905
atttggtggaataacgctggtttttaatcacagtttttttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgttgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaattcggtcaaatcaaagaaactcatcatttttaagaggtttcgtattttttccagagctaaatAGATGAATAGACATAAATAGAATATTTCAccattagtattattattaaggttatgtccatttattgtatgatcgataagtcgataatgtaattatggtGACAGGCCTAGATTCAAATAGGAAACAATCTTATCTTAATTTCTTTATTGTACTTCTGtagttttctttgattttctttaacaaaaacacatttaggcTATGTAATTATCCAATGGTGAAAAAAGTGCCATTACAAATGAATAAAGACCTTCAAAATGCGTTTGTtatgattattaaatattaattattttgtttagtttctaTTCATTGCATCCCTACATTCGACCTTCAGCAACCCCTCCAATCTTGACAGACGTCCTGAAACATAATTTAACAGAGGCAGAAATGCGTCTGTCTGTCCTGTatccctgtatctgtgtgtagcGCTGTAACAGCAGGGGGTTAGAGTTAGAACACTCTGACCCTAAAACTCTGGAAACTCATTTCCACTGAGCCGTACGTGATGCTGTGAGAGGGGAACGCGAGGACAGATCCTAGTCTGATCAATACACTGAGCTGTGGGGCTACAAATACCGATCACATAAATCAACTAACCGGAACGTTCTCTCAGACTGGGAATACTGTGTTCCCAGAACCTGAGGGCTTCTCACTTTcacaaaaaatcaaaaatctaaTCATTTATAGTACACTTGCTCCTAGAATTGGCATACAGCAGAACATTCGACTAGTTTTAACAAGTAAATACATTCCTTTTACATTATTCTGCATATATAACTCatcaaaaatcaaataaataacatttatgcatgcacatttactgtattatgtACTGAGAGGTAATAGGGTAGAAATATGCctatcaatatatatttttaagcatgttacaaaatataaacactAGAACTAGAACAGCCCATGAAATCCTTTGTCTTTGTTTAacttatttaaacaatatatgatgacgtttgatcttgtttttgcttttttttttgtaatactttatagtttctcagggggacgtctgtgaaaaatatattgataaaactcctgcatgtggactacaattaaaaaacaggaggaccagtgagttttttttctttgctttcttggtcacatgacattcagagttcagtagctcctccatttccactcactgttgtgtttacttagATCTATGTGGAAACGCAtgtccaaagtgtaattatgatgtgcggcagtggacaaatagctattgtATTAAACATGAGGCggaactcagagatgtgcgtccgggcgggactaaaattacttcattcagcctgtaattttctcagaggacatctgagaaaaatatgtacatggtcgttctggacaggaataaaatcacagaggacccccataaacaaaaaaaaataccccaGGACgacctgagaaactaatcccgtccggatagggctaaaTAAGAACTGTTAATGacaaatggggaaaaaaacacatagaacagtggtgaaccttcccaggagtgaccagcctcaataaattactctaaaagggcatgaacaacttaTCCAGGAGgacacaaaagaacccagaacaacatttaaagaactgcaggtctcactcacctcagttaagatcagtgttgtTGGGTTTATAGGAAAAAAGGCGAGGTGCAATTACATAATCTCACCAGAggggtctctaaatccccaaatggTCCAAACCCACAGACTGTctctttaaaatgtgttaatttagAATAAGGAGCAGATGATTAGAACATCATTAGAGAGGATTTTAGATAATAATGTCTTATTTAATACTCAAATAATtggaaaacaaatattaatatgtttaaatgcattcattttaaagAACAAAAGGTTTTCATGGGGAGTCCTAATCGTTTCTtgactgtatgtactgtatgtacatgtgtgtgtaaaagttcTGCTAAGGCCATAATGGAGGGGACAGTGGCAGTTTAACAGCAGGCAAAGCAGCAGACCTGAAATTACAGCAGCACAATGCTGTGGAATCGACTTTCAGCAgataaaatacaaagaaataaagaaataaaattaaaaataaaagcgtTCAGCTGAAAGTCTTTTTCAGAACATTTTAGTTTCTGTTTTATCTTCACCTACATTTATTCACCTGTCTGAAATCTGAAAGCTACAGATTTTCAAGGGGAAAACATCACTAAAGCttaaaaacttacaaaatactatattatGCATCACATTCCAAACACCCCatcagtttaatattaattaggATAAAATAACCGTGtatggtatgtgtgtgtaaatttattgtgcaggatttttttttacccaaaagCCTTTACTCCACCTCCTCGACCTCGTTTCACGTCCATAAGCCTCAATGTCAAAAATAAAGGTTCCTAAATGGTTCATATGCCTCTAACTGGTGTAGATGTGGACATTATTTTGAAGAACAATGTATTGAAAGGTTATTTAACAAAGtaataaaagtataattttttaagaaatataagGATAAGGAgccaaataaatgtaataatccTCAACTGAGGCAAGGATTCTTTAAAGGTGCTGAATATAACAAATTCTCTCATGTTTCATGACCTGTCTGGTCTGTTTGttcgcagaaaaaaaaatgctggggtTCCTGGTTCATGGTAAATTGGTGgtggcattattttttttttttacatgatgttaccttagggcaggggtgtccaaaccttttttgttgggggccagaaggagaaatatatttgaagtcacgggccacagacactgtaataaaacaaataatgaaatatacc

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424905 True 3065 lncRNA 0.35 2 2410677 2413833

Neighbor

gene id symbol gene type direction distance location
eif3m eif3m,LOC107602127,LOC107671036 coding upstream 173794 2221969 ~ 2236883 (+)
cstf3 cstf3,LOC107671440 coding upstream 297693 2076601 ~ 2112984 (+)
LOC103031553 pcyt1a,LOC108440592,LOC108264716,LOC107091881 coding upstream 563093 1834677 ~ 1847584 (+)
LOC103029868 NA coding upstream 619801 1787316 ~ 1790876 (+)
omp omp,ompa,LOC107660685,LOC107735103 coding upstream 660434 1745320 ~ 1750243 (+)
pex16 pex16,LOC107753012,LOC107669959,LOC106593118 coding downstream 580235 2994068 ~ 3009972 (+)
LOC103038331 LOC108433450 coding downstream 605326 3019159 ~ 3035820 (+)
cep126 NA coding downstream 656403 3070236 ~ 3107407 (+)
G308658 NA non-coding upstream 62 2407912 ~ 2410615 (+)
G308649 NA non-coding upstream 697 2354127 ~ 2409980 (+)
G308645 NA non-coding upstream 109439 2300942 ~ 2301238 (+)
G308640 NA non-coding upstream 145144 2246311 ~ 2265533 (+)
G308549 NA non-coding upstream 202885 2198840 ~ 2207792 (+)
G308662 NA non-coding downstream 4078 2417911 ~ 2429301 (+)
G308668 NA non-coding downstream 27056 2440889 ~ 2469996 (+)
G308679 NA non-coding downstream 133766 2547599 ~ 2547864 (+)
G308681 NA non-coding downstream 143249 2557082 ~ 2557382 (+)
G308682 NA non-coding downstream 147073 2560906 ~ 2561170 (+)
G308643 kifc3 other upstream 72511 2319891 ~ 2338166 (+)
G308535 depdc7,LOC107758055,LOC107576633 other upstream 266714 2131079 ~ 2143963 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other upstream 390546 2017464 ~ 2020131 (+)
serp1 NA other upstream 578003 1827904 ~ 1832674 (+)
G308090 NA other upstream 2224602 185337 ~ 186075 (+)
G308680 NA other downstream 142494 2556327 ~ 2556569 (+)

Expression


Co-expression Network