RNA id: TU424905


Basic Information

Item Value
RNA id TU424905
length 3065
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G308659
representative True

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2410677 ~ 2413833 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atttggtggaataacgctggtttttaatcacagtttttttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgttgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggttttcaattcggtcaaatcaaagaaactcatcatttttaagaggtttcgtattttttccagagctaaatAGATGAATAGACATAAATAGAATATTTCAccattagtattattattaaggttatgtccatttattgtatgatcgataagtcgataatgtaattatggtGACAGGCCTAGATTCAAATAGGAAACAATCTTATCTTAATTTCTTTATTGTACTTCTGtagttttctttgattttctttaacaaaaacacatttaggcTATGTAATTATCCAATGGTGAAAAAAGTGCCATTACAAATGAATAAAGACCTTCAAAATGCGTTTGTtatgattattaaatattaattattttgtttagtttctaTTCATTGCATCCCTACATTCGACCTTCAGCAACCCCTCCAATCTTGACAGACGTCCTGAAACATAATTTAACAGAGGCAGAAATGCGTCTGTCTGTCCTGTatccctgtatctgtgtgtagcGCTGTAACAGCAGGGGGTTAGAGTTAGAACACTCTGACCCTAAAACTCTGGAAACTCATTTCCACTGAGCCGTACGTGATGCTGTGAGAGGGGAACGCGAGGACAGATCCTAGTCTGATCAATACACTGAGCTGTGGGGCTACAAATACCGATCACATAAATCAACTAACCGGAACGTTCTCTCAGACTGGGAATACTGTGTTCCCAGAACCTGAGGGCTTCTCACTTTcacaaaaaatcaaaaatctaaTCATTTATAGTACACTTGCTCCTAGAATTGGCATACAGCAGAACATTCGACTAGTTTTAACAAGTAAATACATTCCTTTTACATTATTCTGCATATATAACTCatcaaaaatcaaataaataacatttatgcatgcacatttactgtattatgtACTGAGAGGTAATAGGGTAGAAATATGCctatcaatatatatttttaagcatgttacaaaatataaacactAGAACTAGAACAGCCCATGAAATCCTTTGTCTTTGTTTAacttatttaaacaatatatgatgacgtttgatcttgtttttgcttttttttttgtaatactttatagtttctcagggggacgtctgtgaaaaatatattgataaaactcctgcatgtggactacaattaaaaaacaggaggaccagtgagttttttttctttgctttcttggtcacatgacattcagagttcagtagctcctccatttccactcactgttgtgtttacttagATCTATGTGGAAACGCAtgtccaaagtgtaattatgatgtgcggcagtggacaaatagctattgtATTAAACATGAGGCggaactcagagatgtgcgtccgggcgggactaaaattacttcattcagcctgtaattttctcagaggacatctgagaaaaatatgtacatggtcgttctggacaggaataaaatcacagaggacccccataaacaaaaaaaaataccccaGGACgacctgagaaactaatcccgtccggatagggctaaaTAAGAACTGTTAATGacaaatggggaaaaaaacacatagaacagtggtgaaccttcccaggagtgaccagcctcaataaattactctaaaagggcatgaacaacttaTCCAGGAGgacacaaaagaacccagaacaacatttaaagaactgcaggtctcactcacctcagttaagatcagtgttgtTGGGTTTATAGGAAAAAAGGCGAGGTGCAATTACATAATCTCACCAGAggggtctctaaatccccaaatggTCCAAACCCACAGACTGTctctttaaaatgtgttaatttagAATAAGGAGCAGATGATTAGAACATCATTAGAGAGGATTTTAGATAATAATGTCTTATTTAATACTCAAATAATtggaaaacaaatattaatatgtttaaatgcattcattttaaagAACAAAAGGTTTTCATGGGGAGTCCTAATCGTTTCTtgactgtatgtactgtatgtacatgtgtgtgtaaaagttcTGCTAAGGCCATAATGGAGGGGACAGTGGCAGTTTAACAGCAGGCAAAGCAGCAGACCTGAAATTACAGCAGCACAATGCTGTGGAATCGACTTTCAGCAgataaaatacaaagaaataaagaaataaaattaaaaataaaagcgtTCAGCTGAAAGTCTTTTTCAGAACATTTTAGTTTCTGTTTTATCTTCACCTACATTTATTCACCTGTCTGAAATCTGAAAGCTACAGATTTTCAAGGGGAAAACATCACTAAAGCttaaaaacttacaaaatactatattatGCATCACATTCCAAACACCCCatcagtttaatattaattaggATAAAATAACCGTGtatggtatgtgtgtgtaaatttattgtgcaggatttttttttacccaaaagCCTTTACTCCACCTCCTCGACCTCGTTTCACGTCCATAAGCCTCAATGTCAAAAATAAAGGTTCCTAAATGGTTCATATGCCTCTAACTGGTGTAGATGTGGACATTATTTTGAAGAACAATGTATTGAAAGGTTATTTAACAAAGtaataaaagtataattttttaagaaatataagGATAAGGAgccaaataaatgtaataatccTCAACTGAGGCAAGGATTCTTTAAAGGTGCTGAATATAACAAATTCTCTCATGTTTCATGACCTGTCTGGTCTGTTTGttcgcagaaaaaaaaatgctggggtTCCTGGTTCATGGTAAATTGGTGgtggcattattttttttttttacatgatgttaccttagggcaggggtgtccaaaccttttttgttgggggccagaaggagaaatatatttgaagtcacgggccacagacactgtaataaaacaaataatgaaatatacc

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424904 lncRNA upstream 62 2407912 ~ 2410615 (+) True G308658
TU424894 lncRNA upstream 697 2354127 ~ 2409980 (+) True G308649
TU424903 lncRNA upstream 816 2407912 ~ 2409861 (+) False G308658
TU424889 lncRNA upstream 109439 2300942 ~ 2301238 (+) True G308645
TU424884 lncRNA upstream 145144 2246311 ~ 2265533 (+) True G308640
TU424909 lncRNA downstream 4078 2417911 ~ 2429301 (+) True G308662
TU424915 lncRNA downstream 27056 2440889 ~ 2469996 (+) True G308668
TU424926 lncRNA downstream 133766 2547599 ~ 2547864 (+) True G308679
TU424928 lncRNA downstream 143249 2557082 ~ 2557382 (+) True G308681
TU424929 lncRNA downstream 147073 2560906 ~ 2561170 (+) True G308682
XM_022665994.1 mRNA upstream 173794 2221969 ~ 2236883 (+) True eif3m
XM_022665980.1 mRNA upstream 297693 2076601 ~ 2112984 (+) True cstf3
XM_007257769.3 mRNA upstream 563093 1834677 ~ 1847584 (+) False LOC103031553
XM_007257770.3 mRNA upstream 563093 1834951 ~ 1847584 (+) True LOC103031553
XM_007257764.3 mRNA upstream 578003 1827904 ~ 1832674 (+) True serp1
XM_022665992.1 mRNA downstream 580235 2994068 ~ 3009972 (+) True pex16
XM_022665993.1 mRNA downstream 605326 3019159 ~ 3035820 (+) True LOC103038331
XM_022665995.1 mRNA downstream 656403 3070236 ~ 3107407 (+) True cep126
XM_022665996.1 mRNA downstream 656404 3070237 ~ 3107407 (+) False cep126
XM_022665997.1 mRNA downstream 656404 3070237 ~ 3107407 (+) False cep126
TU424887 other upstream 72511 2319891 ~ 2338166 (+) True G308643
TU424747 other upstream 266714 2131079 ~ 2143963 (+) True G308535
TU424711 other upstream 390546 2017464 ~ 2020131 (+) True G308506
TU424184 other upstream 2224602 185337 ~ 186075 (+) True G308090
TU424927 other downstream 142494 2556327 ~ 2556569 (+) True G308680

Expression Profile